View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7805_low_6 (Length: 303)
Name: NF7805_low_6
Description: NF7805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7805_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 35766561 - 35766285
Alignment:
| Q |
18 |
aaggcaagaggttttggtttctgcatccaaatgtggtcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctga |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35766561 |
aaggcaagaggtttatgtttctgcatccaacagtgatcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctga |
35766462 |
T |
|
| Q |
118 |
tatcaacggctttccctgcgaaataccattgcctgatccaaacattcacatcgatgatgtggattcaaccgcaagtgtcgaccctgaactttatctggat |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
35766461 |
tatcaacggctttccctgcgacataccattgcctgatcctaacattcacatcgacgatgtggattcaaccgcaagtgtcgaccctcaactttatcttgat |
35766362 |
T |
|
| Q |
218 |
gtggaaagtgaagcagaggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35766361 |
gtggaaagtgaagcagaggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcct |
35766285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 37 - 264
Target Start/End: Complemental strand, 35761059 - 35760832
Alignment:
| Q |
37 |
tctgcatccaaatgtggtcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgc |
136 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
35761059 |
tctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaaacagattttgggctgagatcaacgaatttccctgc |
35760960 |
T |
|
| Q |
137 |
gaaataccattgcctgatccaaacattcacatcgatgatgtggattcaaccgcaagtgtcgaccctgaactttatctggatgtggaaagtgaagcagagg |
236 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||| |||||||| |||| | |||||||| |||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
35760959 |
gacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccctgaactttatcaggatgtggaaagagaagcagagg |
35760860 |
T |
|
| Q |
237 |
ccagtgacaacatggaagaaaaacgcga |
264 |
Q |
| |
|
|| | ||||||||||||||| |||| |
|
|
| T |
35760859 |
cccgccgtaacatggaagaaaaaggcga |
35760832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 259
Target Start/End: Complemental strand, 35799490 - 35799270
Alignment:
| Q |
39 |
tgcatccaaatgtggtcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcga |
138 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||| ||||||| || |
|
|
| T |
35799490 |
tgcatcccaaagtggtaaactgggacgactctgctgtcaaagaggcattcgacaatgcaaaaaacaggtattgggctgagatcaacggcattccctggga |
35799391 |
T |
|
| Q |
139 |
aataccattgcctgatccaaacattcacatcgatgatgtggattcaaccgcaagtgtcgaccctgaactttatctggatgtggaaagtgaagcagaggcc |
238 |
Q |
| |
|
||||||||||| |||| |||||| |||| |||||||| ||||||| ||||||||||| |||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
35799390 |
cataccattgcccaatcctaacatttacatagatgatgtagattcaaatgcaagtgtcgattctgaacttcatcgggatgtggaaatagaagcagaggcc |
35799291 |
T |
|
| Q |
239 |
agtgacaacatggaagaaaaa |
259 |
Q |
| |
|
| ||||||| |||||||| |
|
|
| T |
35799290 |
cgccacaacataaaagaaaaa |
35799270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 35785984 - 35785796
Alignment:
| Q |
50 |
gtggtcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcgaaataccattgc |
149 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||| |||||||| | |||||||||| |
|
|
| T |
35785984 |
gtggtaaactggaacgactctgctgtcaaagaggcatttgacaatgcaaaaaacaggttttgggctgagatcaacggccttccctgcaacataccattgc |
35785885 |
T |
|
| Q |
150 |
ctgatccaaacattcacatcgatgatgtggattcaaccgcaagtgtcgaccctgaactttatctggatgtggaaagtgaagcagaggcc |
238 |
Q |
| |
|
||||||| |||||| ||||||| ||||| |||| | |||||| | ||| ||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
35785884 |
ctgatcctaacatttacatcgacgatgtagattggaatgcaagtattgactctgaactttatttggaggtggaaagagaagcagaggcc |
35785796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 41 - 264
Target Start/End: Complemental strand, 35789845 - 35789622
Alignment:
| Q |
41 |
catccaaatgtggtcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcgaaa |
140 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| ||||||||||||||| ||||||| || |||||||| |||||||| ||||||| | |||||||||| | |
|
|
| T |
35789845 |
catcccaatgtggtaaactgggacgattctgccgtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgaca |
35789746 |
T |
|
| Q |
141 |
taccattgcctgatccaaacattcacatcgatgatgtggattcaaccgcaagtgtcgaccctgaactttatctggatgtggaaagtgaagcagaggccag |
240 |
Q |
| |
|
|||||| ||||||||| |||||| |||| |||||| | || | | |||||| |||||| ||||||||||||||||||||||||| |||| ||||||| | |
|
|
| T |
35789745 |
taccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcgacactgaactttatctggatgtggaaagagaagtagaggcctg |
35789646 |
T |
|
| Q |
241 |
tgacaacatggaagaaaaacgcga |
264 |
Q |
| |
|
|||||| ||||||||| |||| |
|
|
| T |
35789645 |
ccgcaacattgaagaaaaaggcga |
35789622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 35755897 - 35755705
Alignment:
| Q |
41 |
catccaaatgtggtcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcgaaa |
140 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||| |||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||||||| || | |
|
|
| T |
35755897 |
catcccaatgtggtaaactgggatgactctgctgtaaaagaggcattcaacaatgcaaaaaacaggttttgggctgagatcaacggccttccctgtgaca |
35755798 |
T |
|
| Q |
141 |
taccattgcctgatccaaacattcacatcgatgatgtggattcaaccgcaagtgtcgaccctgaactttatctggatgtggaaagtgaagcag |
233 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||| |||| | |||| | | || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
35755797 |
taccattgcctgatcctaacatatacctcgatgatgtagattggaatgcaactattgatcctgaactatatctggatgtggaaagagaagcag |
35755705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University