View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7806_high_3 (Length: 666)
Name: NF7806_high_3
Description: NF7806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7806_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 250 - 649
Target Start/End: Complemental strand, 15169363 - 15168967
Alignment:
| Q |
250 |
gaagaccaatcaagggatggacaagaaacaagccaacaagactgtaagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtcccaaaatt |
349 |
Q |
| |
|
||||| ||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
15169363 |
gaagagcaatcaaaggatggacaagaagaaaaccaacaagacaataagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatt |
15169264 |
T |
|
| Q |
350 |
tatatttgtttcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaagacaatgatattgttgttgc |
449 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||| |
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|
| T |
15169263 |
tatattt---tcaatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagatagtgatattgttgttgc |
15169167 |
T |
|
| Q |
450 |
aagcttacctaaatcaggtacaacttggttgagagcacttacatttaccattgttaatcgcaatcaatactcctttgagaatcatccattacttaaatcc |
549 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15169166 |
aagcttaccaaaatcaggcaccacttggttgagagcacttacatttacaattgtaaatcgcaatcaatactcctttgagaatcatccattacttaaatcc |
15169067 |
T |
|
| Q |
550 |
attatacatgaactagtgccttccattgaacgtaatctttatgctgctgatatgaaggaccaaattcctatatcaaaaataattgaaccaaggatatttg |
649 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169066 |
attatacataaactagtgccttccattgaacgtaatctttatgctgctgatatgaaggaccaaattcctatatcaaaaataattgaaccaaggatatttg |
15168967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 310 - 642
Target Start/End: Original strand, 15076372 - 15076701
Alignment:
| Q |
310 |
tcacttcctaaagaaaatgggtggggattgtcccaaaatttatatttgtttcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076372 |
tcacttcctaaagaaaatgggtggggattgtcccaaaatgtatattt---tcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttc |
15076468 |
T |
|
| Q |
410 |
aaaacaatttccaagccaaagacaatgatattgttgttgcaagcttacctaaatcaggtacaacttggttgagagcacttacatttaccattgttaatcg |
509 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
15076469 |
aaaacaatttccaagccaaacacaatgatattgttgttgctagcttaccaaaatcaggcaccacttggttgagagcatttacatttacaattgttaatcg |
15076568 |
T |
|
| Q |
510 |
caatcaatactcctttgagaatcatccattacttaaatccattatacatgaactagtgccttccattgaacgtaatctttatgctgctgatatgaaggac |
609 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
15076569 |
caatcaatactcttttgagaatcatccattacttaaatccattatacatgaactagtgccttccattgaacgtaatctttatgctgctgatatcaaagac |
15076668 |
T |
|
| Q |
610 |
caaattcctatatcaaaaataattgaaccaagg |
642 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||| |
|
|
| T |
15076669 |
cgaattcctctatcaaaaataattgaaccaagg |
15076701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 256 - 642
Target Start/End: Complemental strand, 15172178 - 15171812
Alignment:
| Q |
256 |
caatcaagggatggacaagaaacaagccaacaagactgtaagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtcccaaaatttatatt |
355 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
15172178 |
caatcaaaggatggacaagaagcaagccaacaagacaacaagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatgtatatt |
15172079 |
T |
|
| Q |
356 |
tgtttcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaagacaatgatattgttgttgcaagctt |
455 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15172078 |
t---tcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaacacaatgata---------------- |
15171998 |
T |
|
| Q |
456 |
acctaaatcaggtacaacttggttgagagcacttacatttaccattgttaatcgcaatcaatactcctttgagaatcatccattacttaaatccattata |
555 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
15171997 |
-ccaaaatcaggcacaacttggttgagagcacttacatttacaattgtaaatcgcaatcaatactcttttgagaatcattcattacttaaatccattata |
15171899 |
T |
|
| Q |
556 |
catgaactagtgccttccattgaacgtaatctttatgctgctgatatgaaggaccaaattcctatatcaaaaataattgaaccaagg |
642 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
15171898 |
cataaactagtgccttccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctatcaaaaataattgaaccaagg |
15171812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 15051906 - 15052104
Alignment:
| Q |
39 |
attatatatctatcccagctggtataacatttt--ttaataccactagatcacaaggttccatttcataaagtattaaataaaatcctaatctagttaaa |
136 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051906 |
attatatatctctcccagctggtataacattttttttaataccattagatcacaaggttccatttcataaagtattaaataaaatcctaatctagttaaa |
15052005 |
T |
|
| Q |
137 |
attattgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctccttc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15052006 |
attattgaatgaatactggtatcgtgctataaataatagctggttattaacacaattttcaagataacgaaaattgcaactagtgttgtgttctccttc |
15052104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 15066120 - 15066371
Alignment:
| Q |
38 |
gattatatatctatcccagctggtataacattttttaataccactagatcacaaggttccatttcataaagtattaaataaaatcctaatctagttaaaa |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
15066120 |
gattatatatctatcccagctggtataacattttttaataccactagatcacaaggttccatttc--------ttaaataaaatcctaaactaattaaaa |
15066211 |
T |
|
| Q |
138 |
ttattgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctcct---- |
233 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15066212 |
ttattgaatgagtactggcatcgtgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaa |
15066311 |
T |
|
| Q |
234 |
-------------tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa |
280 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15066312 |
tggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa |
15066371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 294 - 571
Target Start/End: Complemental strand, 4507053 - 4506773
Alignment:
| Q |
294 |
taagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtcccaaaatttatatttgtttcaatgtttttggtgtccatcaaatatgatccaa |
393 |
Q |
| |
|
||||||| | |||||||||||||||| || ||| |||||||| ||||||| ||| ||||| |||||| |||||||||||||||||||| | |||||| |
|
|
| T |
4507053 |
taagcagttaatcctctcacttcctagagtaaaagggtggggggcatcccaaattttttatttttttcaaggtttttggtgtccatcaaatttaatccaa |
4506954 |
T |
|
| Q |
394 |
cctataatctcttttcaaaacaatttccaagccaaagacaatgatattgttgttgcaagcttacctaaatcaggtacaacttggttgagagcacttacat |
493 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||| |||||| |||| |
|
|
| T |
4506953 |
cctataaactcttttcaaaatcattttcaagccaaagacaatgatattgttgttgctagcttaccaaaatccggcacaacttggttgaaagcactcacat |
4506854 |
T |
|
| Q |
494 |
ttaccattgttaatcgcaatcaatac---tcctttgagaatcatccattacttaaatccattatacatgaactagtgcctt |
571 |
Q |
| |
|
|| ||||||||||||| |||| | | ||||| || |||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
4506853 |
ttgccattgttaatcgtcatcatttctcttccttagaagatcatccattacttaaattcaattcacatgaactagtgcctt |
4506773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 128 - 280
Target Start/End: Original strand, 15076155 - 15076324
Alignment:
| Q |
128 |
ctagttaaaattattgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076155 |
ctagttaaaattattgaatgaatactggtatcatgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgt |
15076254 |
T |
|
| Q |
228 |
tctcct-----------------tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa |
280 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076255 |
tctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa |
15076324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 323 - 449
Target Start/End: Original strand, 15164330 - 15164456
Alignment:
| Q |
323 |
aaaatgggtggggattgtcccaaaatttatatttgtttcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttcca |
422 |
Q |
| |
|
||||||||||| || |||| ||| |||||||| | |||||| ||||||||||| ||||||| | ||||||||||||| |||| ||||||| |||| || |
|
|
| T |
15164330 |
aaaatgggtggtgaatgtctcaatatttatatctttttcaaggtttttggtgttgatcaaatttaatccaacctataaactctgttcaaaatgattttca |
15164429 |
T |
|
| Q |
423 |
agccaaagacaatgatattgttgttgc |
449 |
Q |
| |
|
||| |||||||||| | |||||||||| |
|
|
| T |
15164430 |
agctaaagacaatgctgttgttgttgc |
15164456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 15076022 - 15076064
Alignment:
| Q |
38 |
gattatatatctatcccagctggtataacattttttaatacca |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076022 |
gattatatatctatcccagctggtataacattttttaatacca |
15076064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 15215118 - 15215072
Alignment:
| Q |
234 |
tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa |
280 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215118 |
tctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa |
15215072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 13032958 - 13033001
Alignment:
| Q |
125 |
aatctagttaaaattattgaatgaatactggtatcgtgctataa |
168 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13032958 |
aatctaattaaaattattgaatgaatactggtatcgtgctataa |
13033001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 15052120 - 15052163
Alignment:
| Q |
234 |
tctcacacatatgaaagaagaccaatcaagggatggacaagaaa |
277 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15052120 |
tctcaaacatatgaaagaagaccaatcaagggatggacaagaaa |
15052163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 15215249 - 15215212
Alignment:
| Q |
93 |
gttccatttcataaagtattaaataaaatcctaatcta |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215249 |
gttccatttcataaagtattaaataaaatcctaatcta |
15215212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 13033142 - 13033225
Alignment:
| Q |
367 |
ttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaagacaatgatattgttgttgca |
450 |
Q |
| |
|
||||||||||||||| || | |||||| || | | | |||||||||| || || || ||||||||||||||||||||||||||| |
|
|
| T |
13033142 |
ttttggtgtccatcatatcttatccaatctgtcaacacttttcaaaataaatttcatgccaaagacaatgatattgttgttgca |
13033225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 4507110 - 4507071
Alignment:
| Q |
252 |
agaccaatcaagggatggacaagaaacaagccaacaagac |
291 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
4507110 |
agaccaatcaagggatggacaagaagcatgccaacaagac |
4507071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 15066473 - 15066556
Alignment:
| Q |
367 |
ttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaagacaatgatattgttgttgca |
450 |
Q |
| |
|
|||||||||||||||| | | |||||| || | | |||||||||||| ||||| || |||||||| | ||||||||| |||||| |
|
|
| T |
15066473 |
ttttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatattgtagttgca |
15066556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 15214970 - 15214887
Alignment:
| Q |
367 |
ttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaagacaatgatattgttgttgca |
450 |
Q |
| |
|
|||||||||||||||| | | || ||| || | | |||||||||||| ||||| || || ||||||| |||||||||||||||| |
|
|
| T |
15214970 |
ttttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttcatgctaaagacagtgatattgttgttgca |
15214887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 450
Target Start/End: Original strand, 14999896 - 14999981
Alignment:
| Q |
365 |
gtttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaagacaatgatattgttgttgca |
450 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||| |||||||| ||| ||||| ||| ||||||| | |||| || |||||||| |
|
|
| T |
14999896 |
gtttttggtgtccaccaatattaatccaacctataaactcttttcgaaataattttcaaaccaaagatagtgatgttattgttgca |
14999981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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