View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7806_low_2 (Length: 681)
Name: NF7806_low_2
Description: NF7806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7806_low_2 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 509
Target Start/End: Original strand, 30662789 - 30663284
Alignment:
| Q |
16 |
aaatattcaattttaatttagaggtctacgtgatttgaatttacattatcctatgtgtgaattgtttaacggtacacgtaattttaatttacatcaccat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30662789 |
aaatattcaattttaatttagaggtctacgtgatttgaatttacattatcctatgtgtgaattgtttaacggtacacgtaattttaatttacatcaccat |
30662888 |
T |
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| Q |
116 |
acattttttaagatcacgtatcattggttcaattaatttataaattgaaagccaatttaaacaataatggtgacaatagtcgctacagttgttatccatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30662889 |
acattttttaagatcacgtatcattggttcaattcaattataaattgaaagccaatttaaacaataatggtgacaatagtcgctacagttgttatccatg |
30662988 |
T |
|
| Q |
216 |
gactataaatagaagggagagaggagcatttacaaaacaagaagagagagatgaatgacttggaagatgaaagaaagagggagacaaaggaataggaaat |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30662989 |
aactacaaatagaagggagagaggagcatttacaaaacaagaagagagagatgaatgacttggaagatgaaagaaagagggagacaaaggaataggaaat |
30663088 |
T |
|
| Q |
316 |
ggaggtaaagaaaattagggaatctaaagaatatgataagaaaaatttaaaaattaaccatggggaggtgaagagaatgtttgattgcaagagttg--nn |
413 |
Q |
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| T |
30663089 |
ggaggtaaagaaaattagggaatctaaagaatatgataagaaaaatttaaaaattaaccatggggaggtgaagagaatgtttgattgcaagaattgtttt |
30663188 |
T |
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| Q |
414 |
nnnnnnggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttgtttgcaatgaagtttgttttagccgtcatattggttttggt |
509 |
Q |
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|| |||||||||||||| |||||||||| ||| |||| |||||||||||| ||| ||||||||||||| || |||||||||||||| |
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| T |
30663189 |
ttttttttagtgagtagcggcgatgggtgcttatggattttgtttttagtggttgtttgctatggagtttgttttagctgtgatattggttttggt |
30663284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 558
Target Start/End: Original strand, 30663309 - 30663362
Alignment:
| Q |
506 |
tggtaggt-ttagggaggtgatgagtgtttttcgtgtctttgtttattttgggt |
558 |
Q |
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| T |
30663309 |
tggtaggtcttagggaggtgatgagtgcttttcgtgtctttgtttattttgggt |
30663362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 681
Target Start/End: Original strand, 30665767 - 30665854
Alignment:
| Q |
597 |
gtgatattagtaaatggatgggttgat---annnnnnnnatgctaaaagtttcgttgattttcagattgtggattttcaaatttccct |
681 |
Q |
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| T |
30665767 |
gtgatattagtaaatggatgggttgattttattttttttatgctaaaagttttgttgattttcagattgtgaattttcaaatttccct |
30665854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 43344742 - 43344672
Alignment:
| Q |
420 |
ggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttgtttgcaatgaagtttgttttag |
490 |
Q |
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| T |
43344742 |
ggagcgagtagcggcgatgggtgcttatagatttcgtttttggtggttgttcacgatggagtttgttttag |
43344672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 1819867 - 1819797
Alignment:
| Q |
420 |
ggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttgtttgcaatgaagtttgttttag |
490 |
Q |
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| T |
1819867 |
ggagtgagtagcggcgatgggtatttatggatttcgtttccaatggttgtttgcgttggagtttgttttag |
1819797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 1819916 - 1819882
Alignment:
| Q |
369 |
ttaaccatggggaggtgaagagaatgtttgattgc |
403 |
Q |
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| T |
1819916 |
ttaaccatggggaggtgaagaggatgtttgattgc |
1819882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 31611499 - 31611619
Alignment:
| Q |
369 |
ttaaccatggggaggtgaagagaatgtttgattgcaagagttgnnnnnnnnggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttg |
468 |
Q |
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|||||||||||||||||||||| |||||||||||| || | || |||| |||||||||| ||| ||||||||| |||||||||| |||||| |
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| T |
31611499 |
ttaaccatggggaggtgaagaggatgtttgattgcgaggggtg-tttttttggagtgagtagcggcaatggatgcttatggatttcgtttccattggttg |
31611597 |
T |
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| Q |
469 |
tttgcaatgaagtttgttttag |
490 |
Q |
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| T |
31611598 |
ttcgtgatggagtttgttttag |
31611619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 34092963 - 34092997
Alignment:
| Q |
369 |
ttaaccatggggaggtgaagagaatgtttgattgc |
403 |
Q |
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| T |
34092963 |
ttaaccatggggaggtgaagaggatgtttgattgc |
34092997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 470
Target Start/End: Complemental strand, 8987856 - 8987756
Alignment:
| Q |
369 |
ttaaccatggggaggtgaagagaatgtttgattgcaagagttgnnnnnnnnggagcgagtagcggcgatgagtgcttatgggtttcgtttccggtggttg |
468 |
Q |
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|||||||||||||| ||||||| |||||||||||| ||| || |||| |||||||||||||||||| |||||| ||||||||| ||||||| |
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| T |
8987856 |
ttaaccatggggagatgaagaggatgtttgattgcgcgaggtgtttcttt-ggagtgagtagcggcgatgagtggttatggatttcgtttcaagtggttg |
8987758 |
T |
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| Q |
469 |
tt |
470 |
Q |
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|| |
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| T |
8987757 |
tt |
8987756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 8297 - 8331
Alignment:
| Q |
369 |
ttaaccatggggaggtgaagagaatgtttgattgc |
403 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
8297 |
ttaaccatggggaggtgaagaggatgtttgattgc |
8331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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