View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7806_low_4 (Length: 627)
Name: NF7806_low_4
Description: NF7806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7806_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 326 - 613
Target Start/End: Complemental strand, 836187 - 835898
Alignment:
| Q |
326 |
atatgttcctaatatgtctgggaacaagggtagccttattaaaagctaatgtgaccaattttgagttagtctctaaccaaaggttaaagcagcctttcga |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
836187 |
atatgttcctaatatgtctgggaacaagggtagccttattaaaagctaatgtgaccaattttgagttagtctctaaccaaaggttaaagcagcctttcga |
836088 |
T |
|
| Q |
426 |
gtaaactagctctataaccaaaataactgcaaacaattcagcataaagagttgattcaacacccaggcaccgtgc-aaaacaaccatgacaagagccatt |
524 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
836087 |
gtaaactagctctatagccaaaataactgcaaacaattcagcataaagagttgattcaacacccaggcaccgtgcaaaaacaaccatgacaagagccatt |
835988 |
T |
|
| Q |
525 |
tgcatctctaaagagccct-caaaaacagcaatagcattagaaacggcaccatttgcattcactttcatccaattcgatattgggggata |
613 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
835987 |
tgcatctctaaagagccctccaaaaacagcaatagcattagaaacggcaccatttgtattcactttcatccaattcgatattgagggata |
835898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 836475 - 836200
Alignment:
| Q |
21 |
tttaagcaaaagtgatgcaaagagcatcactcaattcattgaaatgaaaagnnnnnnnn--gtgaagcataacaaagaaaaagatgactagactaaaacc |
118 |
Q |
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| T |
836475 |
tttaagcaaaaatgatgcaaagagcatcactcaattcattgaaatgaaaagaaaaaaaaaagtgaagcataacaaagaaaacaatgactagactaaaacc |
836376 |
T |
|
| Q |
119 |
tttttaaaagataataaatctatagttaggaatgcctaatctatttttacaaagtctattatgatctagtctggaatatcatcccaacaagtgaaggtgg |
218 |
Q |
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|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||| |
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| T |
836375 |
ttttcaaaagatagtaaatctatagttaggaatgtctaatctatttttacaaagtctattctgacctagtctgaaatatcatcccaacaagtgaaagtgg |
836276 |
T |
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| Q |
219 |
ataaagagagtcctataatagctagcgtatcaacacaaaaattatattctctgataaatgagttacaattaggtgc |
294 |
Q |
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| T |
836275 |
ataaagagagtcctataatagctagcgtatcaacacaaaaattatcttctctgataaatgagttacaattaggtgc |
836200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 276 - 390
Target Start/End: Original strand, 20733176 - 20733290
Alignment:
| Q |
276 |
atgagttacaattaggtgcatgttgttaatcaaatccaaacagttaagccatatgttcctaatatgtctgggaacaagggtagccttattaaaagctaat |
375 |
Q |
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|||||||||||||| |||| |||||||||||||| || |||||||| ||||||||||||||| || | ||| ||||| ||||||||||| ||||||||| |
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| T |
20733176 |
atgagttacaattaaatgcacgttgttaatcaaattcatacagttaaaccatatgttcctaatctgccaggggacaagtgtagccttattgaaagctaat |
20733275 |
T |
|
| Q |
376 |
gtgaccaattttgag |
390 |
Q |
| |
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|||| ||||||||| |
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| T |
20733276 |
gtgatgaattttgag |
20733290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 544
Target Start/End: Original strand, 20733347 - 20733435
Alignment:
| Q |
456 |
aaacaattcagcataaagagttgattcaacacccaggcaccgtgcaaaacaaccatgacaagagccatttgcatctctaaagagccctc |
544 |
Q |
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||||| |||||||||||||| ||||||| ||| | |||| | | ||||||||||||||| ||||| |||||||||||||||||| |
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| T |
20733347 |
aaacagttcagcataaagagccgattcaataccgatgcactgccgagaacaaccatgacaagtaccattcacatctctaaagagccctc |
20733435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 239 - 474
Target Start/End: Original strand, 56105656 - 56105894
Alignment:
| Q |
239 |
gctagcgtatcaacacaaaaattatattctctgataa-atgagttacaattaggtgcatgttgttaatcaaatccaaacagttaagccatatgttcctaa |
337 |
Q |
| |
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|||||| ||||||||||| |||||| |||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
56105656 |
gctagcatatcaacacaagaattatcttctttgtaaatatgagttacaattaggtgcatgttgttaatcaaattcaaacagttaagccatatgttcctaa |
56105755 |
T |
|
| Q |
338 |
tatgtctg-ggaaca-agggtagccttattaaaagctaatgtgaccaattttgagttagtctctaaccaaaggttaaagcagcctttcgagtaaactagc |
435 |
Q |
| |
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| |||| | || || | |||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||| | | |||| |||||| ||||| |
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| T |
56105756 |
tctgtcagaggtgcatatattagccttattgaaagctagtgtgaccaattttgagtcggtctctagccaaaggttaaaccggactttggagtaagctagc |
56105855 |
T |
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| Q |
436 |
tctataaccaaaataactgcaaacaattcagcataaaga |
474 |
Q |
| |
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| |||| |||||||||| |||| | ||||||||||||| |
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| T |
56105856 |
tatatagccaaaataacaacaaatagttcagcataaaga |
56105894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 276 - 473
Target Start/End: Complemental strand, 39689453 - 39689256
Alignment:
| Q |
276 |
atgagttacaattaggtgcatgttgttaatcaaatccaaacagttaagccatatgttcctaatatgtctgggaacaagggtagccttattaaaagctaat |
375 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||| ||||||||||||||| |||||||||| || ||| || ||||||||||| || ||||||| |
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| T |
39689453 |
atgagttacaattagatgcatgttcttaaacaaatttaaacagttaagccatctgttcctaatctgcgaggggaccagggtagccttgttgaaagctagc |
39689354 |
T |
|
| Q |
376 |
gtgaccaattttgagttagtctctaaccaaaggttaaagcagcctttcgagtaaactagctctataaccaaaataactgcaaacaattcagcataaag |
473 |
Q |
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||||||||||| ||| | |||||||||||||||| || ||||||| |||||| ||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
39689353 |
gtgaccaatttacagtcaatctctaaccaaaggttgaactagcctttggagtaagctagctctatagccaaaataacagcaaacaattatgcataaag |
39689256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 13743847 - 13743921
Alignment:
| Q |
92 |
aaagaaaaagatgactagactaaaacctttttaaaagataataaatctatagttaggaatgcctaatctattttt |
166 |
Q |
| |
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|||||||| || || ||||| ||||||| || ||||| ||||||||||||| ||||||| ||| |||||||||| |
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| T |
13743847 |
aaagaaaatgaggattagaccaaaacctcttcaaaaggtaataaatctataattaggaagacctgatctattttt |
13743921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 13749347 - 13749421
Alignment:
| Q |
92 |
aaagaaaaagatgactagactaaaacctttttaaaagataataaatctatagttaggaatgcctaatctattttt |
166 |
Q |
| |
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|||||||| || || ||||| ||||||| || ||||| ||||||||||||| ||||||| ||| |||||||||| |
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|
| T |
13749347 |
aaagaaaatgaggattagaccaaaacctcttcaaaaggtaataaatctataattaggaagacctgatctattttt |
13749421 |
T |
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