View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7806_low_5 (Length: 582)
Name: NF7806_low_5
Description: NF7806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7806_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 7685496 - 7685717
Alignment:
| Q |
3 |
gtgattatgaatcctagacatactctaaacaataccatacgcaagacctctctacgagtgacaaatctctttcaaagtctcagttacttccctgtctcag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
7685496 |
gtgattatgaatcctagacatactctaaacaataccataccaaagacctttctaggagtgtcaaatatctttcacagtctcagttacttccctgtctcag |
7685595 |
T |
|
| Q |
103 |
tgagtgacaagtaattctc---tttttgtgtcaattgactattgaaggtacaaggaatatgttgaaaaatccttttttgtttgttctggatagtccttaa |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
7685596 |
tgagtgacaagtaattctcttttttttgtgtcaattgactattgaaggtacaaggaatatgttgaaaaatcctttttagtttgttctgaatagtccttaa |
7685695 |
T |
|
| Q |
200 |
taaatagaactttgatcttgag |
221 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
7685696 |
taaatataactttgatcttgag |
7685717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 235 - 401
Target Start/End: Complemental strand, 9305511 - 9305345
Alignment:
| Q |
235 |
tagagaacgcaataaccaatgggatagtagaggtgttgtttggcaatgttgggtttctgaggtaattttaatcgaaagttgttttgtttagttatgattt |
334 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
9305511 |
tagaaaacgcaataacaaatgagatagtagaggagttgtttggcagtgttgggtttctgaggtaattttaattgaaagttattttgtttagttatgattt |
9305412 |
T |
|
| Q |
335 |
gagagttttggaatttgttaaaattgttaagtaaatagagggatcctatatggagcagatcttgatt |
401 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| |||||||| |||| ||||||||| |
|
|
| T |
9305411 |
gagagttttggaatttgttaaaatcgttaagtaaatggagggagcctatatgcagcatatcttgatt |
9305345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 406 - 484
Target Start/End: Complemental strand, 9302611 - 9302532
Alignment:
| Q |
406 |
taagttgtgcggaggttaagagattaaagaaaaagagttagtttatatttgatattttcatatggca-ttttctatggat |
484 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9302611 |
taagttgtgtggaggttatgagattaaagaaaaatagttagtttatatttgatattttcatatggcatttttctatggat |
9302532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University