View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7806_low_6 (Length: 500)
Name: NF7806_low_6
Description: NF7806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7806_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 49059084 - 49058772
Alignment:
| Q |
1 |
acaggatagaatagataaaatgcagttttgtcaagtaaactccaatggacccttcatggattttgatgaatgtggtatgtcaagaagtgcaatttattag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49059084 |
acaggatagaatagataaaatgcagttttgtcaagtaaactccaatggacccttcatggattttgatgaatgtggtatgtcaagaagtgcaatttattag |
49058985 |
T |
|
| Q |
101 |
taaatgtaataaatgggcaggttcctcgagcggacgaagccctatgtggtaccgttcagggataatcttgtaaattggaccgtagtattaaacacaagtc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49058984 |
taaatgtaataagtgggcaggttcctcgagtggacgaagccctatgtggtaccgttcagggataatcttgtaaattggaccgtagtattaaacacaagtc |
49058885 |
T |
|
| Q |
201 |
gtactatgtacaccctaagcttgattaattaataaaaaattactgtagcagctctacaattgaaggtgtagggccaaattgcatgatcaaatatcgtgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49058884 |
gtactatgtacaccctaagcttgattaattaataaaaaattactgtagcagctctacaattgaaggtgtagggccaaattgcatgatcaaatatcgtgtg |
49058785 |
T |
|
| Q |
301 |
ttcattgtacgac |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
49058784 |
ttcattgtacgac |
49058772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 388 - 499
Target Start/End: Complemental strand, 49058697 - 49058587
Alignment:
| Q |
388 |
aaaatcctctagcaatggaagttcaagcttccctcttcctggccatcatggcaaatggagcaactcttatccgccctcctcgaagaatgtggccgaattc |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49058697 |
aaaatcctctagcaatggaagttcaagcttccctcttcctggccatcatggcaaatggagcaactcttatccg-cctcctcgaagaatgtggccgaattc |
49058599 |
T |
|
| Q |
488 |
accatcacattt |
499 |
Q |
| |
|
||||||| |||| |
|
|
| T |
49058598 |
accatcatattt |
49058587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 6553632 - 6553707
Alignment:
| Q |
8 |
agaatagataaaatgcagttttgtcaagtaaactccaatggacccttcatggattttgatgaatgtggtatgtcaa |
83 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
6553632 |
agaatagataacatgcagttttgtcaagttaactccaatggacccttcatagattttgataaatgtggtaagtcaa |
6553707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 499
Target Start/End: Original strand, 6553868 - 6553956
Alignment:
| Q |
410 |
tcaagcttccctcttcctggccatcatggcaaatggagcaactcttatccgccctcctcgaagaatgtggccgaattcaccatcacattt |
499 |
Q |
| |
|
||||| ||||| ||||||| |||||||| ||||||||||||| |||||| |||||||||| ||| |||||||||||||| ||| |||| |
|
|
| T |
6553868 |
tcaagtttcccacttcctgtccatcatgaacaatggagcaactcctatccg-cctcctcgaacaatatggccgaattcaccgtcatattt |
6553956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 34372540 - 34372468
Alignment:
| Q |
158 |
agggataatcttgtaaattggaccgtagta-ttaaacacaagtcgtactatgtacaccctaagcttgattaat |
229 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||| |||||| ||||| |||| ||||||||||||| |||| |
|
|
| T |
34372540 |
agggataatcttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataat |
34372468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 38779442 - 38779509
Alignment:
| Q |
163 |
taatcttgtaaattggaccgtagtatt-aaacacaagtcgtactatgtacaccctaagcttgattaat |
229 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||| |||||||| | ||||||||||||| |||| |
|
|
| T |
38779442 |
taatcttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaat |
38779509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 38752678 - 38752634
Alignment:
| Q |
156 |
tcagggataatcttgtaaattggaccgtagta-ttaaacacaagt |
199 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
38752678 |
tcagagataatcttgtaaattggactgtagtatttaaacacaagt |
38752634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 48883769 - 48883836
Alignment:
| Q |
163 |
taatcttgtaaattggaccgtagtattaaac-acaagtcgtactatgtacaccctaagcttgattaat |
229 |
Q |
| |
|
||||||| |||||||||| ||||||||||| || ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
48883769 |
taatcttttaaattggactgtagtattaaaataccagttgtactctgtacaccctaagcttgattaat |
48883836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 37410071 - 37410009
Alignment:
| Q |
163 |
taatcttgtaaattggaccgtagta-ttaaacacaagtcgtactatgtacaccctaagcttga |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| | ||| |||||| || |||||||||| |
|
|
| T |
37410071 |
taatcttgtaaattggaccgtagtatttaaaaacaaattgtaatatgtaaactctaagcttga |
37410009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University