View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7806_low_7 (Length: 437)
Name: NF7806_low_7
Description: NF7806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7806_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 32746307 - 32745890
Alignment:
| Q |
1 |
acatgtaaacggtcttcgaggcttgagcccacggaattttcccttatcttggagttgagcctccaggagtaggacccaatacacataaatttgcttgtat |
100 |
Q |
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| T |
32746307 |
acatgtaaacggtcttcgaggcttgagcccacggaattttcccttatcttggggttgagcctccaggagttggacccaatacacataaatttgcttgtat |
32746208 |
T |
|
| Q |
101 |
atgaaaaaagaggagtgatgtatgatttaaatgtcatcactcatcacattataatcatagcaacatagatgaatgctttgtagtgtcggaaaaagttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32746207 |
atgaaaaaagaggagtgatgtatgatttaaatgtcatcactcatcacattataatcatagcaacatagatgaatgctttgtagtgtcggaaaaagttttt |
32746108 |
T |
|
| Q |
201 |
gttgtggtcaagaaaatagaagggcttttaagcattttgcatgattatttagtctaggtacagttgtttagcagatttattttatggtaatataagttga |
300 |
Q |
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| T |
32746107 |
gttgtggtcaagaaaatagaagggcttttaagcattttgaatgattatttagtctaggttgagctgtttaacagatttattttatggtaatataagttga |
32746008 |
T |
|
| Q |
301 |
taattttacttgcagtctccgcgtatgtatttgatgggattttctcttgttcttatttggtcgaaaataaagagcaagacaaaactcggaagctgaagaa |
400 |
Q |
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| T |
32746007 |
tacttttacttgcagtctccacttatgtatttgatgggattttctcttgttctgatttggtggaaaataaagagcaagacaaaactcggaagctgaagaa |
32745908 |
T |
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| Q |
401 |
aatatttctccagggtac |
418 |
Q |
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| T |
32745907 |
aatattgctccagggtac |
32745890 |
T |
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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 3287422 - 3287514
Alignment:
| Q |
309 |
cttgcagtctccgcgtatgtatttgatgggattttctcttgttcttatttggtcgaaaataaagagcaagacaaaactcggaagctgaagaaa |
401 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
3287422 |
cttgcagtctccgcttatgtctttgatgggattttctcttgttctgatttggtcgaaaataaagagcaagaaaaaacatggcagctgaagaaa |
3287514 |
T |
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