View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7806_low_9 (Length: 380)
Name: NF7806_low_9
Description: NF7806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7806_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 178 - 345
Target Start/End: Original strand, 43729598 - 43729765
Alignment:
| Q |
178 |
tgcagaagctccaatttgtagctttaaagaaaaccacgttttgggtcagatccacgttttagggaattgattttgcagtcatccaaacatccataaaaag |
277 |
Q |
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| T |
43729598 |
tgcagaagctccaatttgtagctttaaagaaaaccacgttttgggtcagatccacgttttagggaattgattttgcagtcatccaaacatccataaaaag |
43729697 |
T |
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| Q |
278 |
gttgaaatggcgtttgggggtgaaaacgggcttttggagcttgcaaacgtatagccaaacaggcacta |
345 |
Q |
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| T |
43729698 |
gttgaaatggcgtttgggagtgaaaacgggcttttggagcttgcaaacgtatagccaaacaggcacta |
43729765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 178 - 344
Target Start/End: Original strand, 25698680 - 25698846
Alignment:
| Q |
178 |
tgcagaagctccaatttgtagctttaaagaaaaccacgttttgggtcagatccacgttttagggaattgattttgcagtcatccaaacatccataaaaag |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25698680 |
tgcagaagctccaatttgtagctttaaagaaaaccacgttttgggtcagatccacgttttagggaattgattttgcagtcatccaaacatccatgaaaag |
25698779 |
T |
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| Q |
278 |
gttgaaatggcgtttgggggtgaaaacgggcttttggagcttgcaaacgtatagccaaacaggcact |
344 |
Q |
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| T |
25698780 |
gttgaaatggcgtttgggagtgaaaatgggcttttggagcttgcaaacgtatagccaaacaggcact |
25698846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 6599745 - 6599583
Alignment:
| Q |
12 |
ctggctccgccaccgagagcgaaatgacattagacatgtgataatatgcaaatattccaacggtgagcaatatcaacttataagaaattgatcatattaa |
111 |
Q |
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| T |
6599745 |
ctggctccgccaccgagagtaaaatgacattagacgtgtgataataagcaaatattccaacatcgagcaatatcaacttataagaaaagggtcatattaa |
6599646 |
T |
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| Q |
112 |
tcagtgccctggggcactagttaagcaaataaaaatagaaagagatgacaaagttaacattaa |
174 |
Q |
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| T |
6599645 |
tcagtgccttggggcattagttaagcaaataaaaatataaagaaaggacaaagttaacattaa |
6599583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 6675198 - 6675036
Alignment:
| Q |
12 |
ctggctccgccaccgagagcgaaatgacattagacatgtgataatatgcaaatattccaacggtgagcaatatcaacttataagaaattgatcatattaa |
111 |
Q |
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| T |
6675198 |
ctggctccgccaccgagagtaaaatgacattagacgtgtgataataagcaaatattccaacatcgagcaatatcaacttataagaaaagggtcatattaa |
6675099 |
T |
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| Q |
112 |
tcagtgccctggggcactagttaagcaaataaaaatagaaagagatgacaaagttaacattaa |
174 |
Q |
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| T |
6675098 |
tcagtgccttggggcattagttaagcaaataaaaatataaagaaaggacaaagttaacattaa |
6675036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 14401477 - 14401577
Alignment:
| Q |
226 |
gatccacgttttagggaattgattttgcagtc-atccaaacatccataaaaaggttgaaatggcgtttgggggtgaaaacgggcttttggagcttgcaaa |
324 |
Q |
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|||||| |||||||||||||||||||||| | |||||||||||| | |||||||| ||||| |||||||| ||||||||||| ||| ||||| ||||| |
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| T |
14401477 |
gatccatgttttagggaattgattttgcaaactatccaaacatccttgaaaaggttaaaatgacgtttgggaatgaaaacgggcgtttagagctagcaaa |
14401576 |
T |
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| Q |
325 |
c |
325 |
Q |
| |
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| |
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| T |
14401577 |
c |
14401577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 336
Target Start/End: Complemental strand, 31132009 - 31131861
Alignment:
| Q |
187 |
tccaatttgtagctttaaagaaaaccacgttttgggtcagatccacgttttagggaattgattttgcagtcatccaaacatccataaaaaggttgaaatg |
286 |
Q |
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|||||| | |||||||||||||| || ||||||||| |||| |||||||||| |||||| |||| ||| |||||||||||||| | | ||||||| || |
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| T |
31132009 |
tccaatctatagctttaaagaaactcatgttttgggt-agattcacgttttagagaattggttttaaagttatccaaacatccatgagatggttgaattg |
31131911 |
T |
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| Q |
287 |
gcgtttgggggtgaaaacgggcttttggagcttgcaaacgtatagccaaa |
336 |
Q |
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| T |
31131910 |
gcgtttggaattgaaaacgggagtttggggtttacaaacgtgtaaccaaa |
31131861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 42498997 - 42498948
Alignment:
| Q |
125 |
gcactagttaagcaaataaaaatagaaagagatgacaaagttaacattaa |
174 |
Q |
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||||||||||||||| ||||||| |||||| ||||||||||||| ||||| |
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| T |
42498997 |
gcactagttaagcaattaaaaatggaaagaaatgacaaagttaatattaa |
42498948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 9910080 - 9910124
Alignment:
| Q |
130 |
agttaagcaaataaaaatagaaagagatgacaaagttaacattaa |
174 |
Q |
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|||||||||| |||||||||||||| | |||||| |||||||||| |
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| T |
9910080 |
agttaagcaattaaaaatagaaagaaaagacaaaattaacattaa |
9910124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 35580000 - 35579944
Alignment:
| Q |
107 |
attaatcagtgccctggggcactagttaagcaaataaaaatagaaagagatgacaaa |
163 |
Q |
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|||||||| || |||| |||||||||||| ||| ||||||| |||||| |||||||| |
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| T |
35580000 |
attaatcaatgacctgaggcactagttaaacaattaaaaatggaaagaaatgacaaa |
35579944 |
T |
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