View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_high_10 (Length: 400)

Name: NF7807_high_10
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_high_10
NF7807_high_10
[»] scaffold0005 (2 HSPs)
scaffold0005 (9-137)||(22190-22318)
scaffold0005 (20-145)||(12407-12532)
[»] chr4 (8 HSPs)
chr4 (9-137)||(14817393-14817521)
chr4 (20-145)||(14827177-14827302)
chr4 (4-119)||(21324026-21324142)
chr4 (4-130)||(14283082-14283207)
chr4 (12-89)||(10702053-10702130)
chr4 (12-89)||(10915823-10915900)
chr4 (159-214)||(13895033-13895088)
chr4 (11-97)||(11169644-11169732)
[»] chr8 (7 HSPs)
chr8 (9-144)||(25239233-25239368)
chr8 (4-113)||(25188833-25188942)
chr8 (20-110)||(19440765-19440855)
chr8 (20-110)||(19576915-19577005)
chr8 (9-110)||(23807820-23807921)
chr8 (20-110)||(21539477-21539567)
chr8 (12-130)||(24539845-24539965)
[»] chr5 (3 HSPs)
chr5 (4-164)||(37984571-37984733)
chr5 (9-109)||(21231291-21231391)
chr5 (48-122)||(21218050-21218124)
[»] scaffold0047 (1 HSPs)
scaffold0047 (20-145)||(23987-24112)
[»] chr2 (6 HSPs)
chr2 (19-110)||(21338641-21338732)
chr2 (12-110)||(6735-6833)
chr2 (14-110)||(19106-19202)
chr2 (4-116)||(29791082-29791194)
chr2 (21-97)||(16878569-16878645)
chr2 (21-97)||(16990702-16990778)
[»] chr7 (3 HSPs)
chr7 (4-115)||(11245534-11245645)
chr7 (12-137)||(3083322-3083447)
chr7 (21-137)||(39888529-39888646)
[»] chr6 (4 HSPs)
chr6 (20-110)||(9345388-9345478)
chr6 (4-119)||(9340441-9340559)
chr6 (20-77)||(16262080-16262136)
chr6 (109-145)||(21082552-21082588)
[»] chr1 (6 HSPs)
chr1 (20-110)||(10215884-10215974)
chr1 (20-110)||(10215997-10216087)
chr1 (20-97)||(23308300-23308377)
chr1 (12-137)||(24057956-24058082)
chr1 (20-81)||(24090423-24090484)
chr1 (67-130)||(9482-9546)
[»] scaffold0290 (1 HSPs)
scaffold0290 (4-96)||(5499-5591)
[»] chr3 (1 HSPs)
chr3 (50-145)||(22800919-22801015)
[»] scaffold0042 (1 HSPs)
scaffold0042 (20-110)||(10119-10208)


Alignment Details
Target: scaffold0005 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 22318 - 22190
Alignment:
Q  9 agaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagata 108  Q
    |||||||||  |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  22318 agaggagtccgatgtaccttagctaggaattcatcggtcatgtatgggattgtactcggggttactccacccgatacactccgtaaaatcaactcagata 22219  T
Q  109 attgtatgttacacgctaacattctaaca 137  Q
    |||||||||||||||||||| ||||||||    
T  22218 attgtatgttacacgctaactttctaaca 22190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 12532 - 12407
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataattgtatgtta 119  Q
    |||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  12532 atgtaccttagctaggaattcatcggtcatgtatgagattgtactcggggttactccacccgatgcactccataaaataaactcagataattgtatgtta 12433  T
Q  120 cacgctaacattctaacaaaatgaat 145  Q
    ||||||||| ||| |||| |||||||    
T  12432 cacgctaactttccaacataatgaat 12407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 14817393 - 14817521
Alignment:
Q  9 agaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagata 108  Q
    |||||||||  |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  14817393 agaggagtccgatgtaccttagctaggaattcatcggtcatgtatgggattgtactcggggttactccacccgatacactccgtaaaatcaactcagata 14817492  T
Q  109 attgtatgttacacgctaacattctaaca 137  Q
    |||||||||||||||||||| ||||||||    
T  14817493 attgtatgttacacgctaactttctaaca 14817521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 14827177 - 14827302
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataattgtatgtta 119  Q
    |||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  14827177 atgtaccttagctaggaattcatcggtcatgtatgagattgtactcggggttactccacccgatgcactccataaaataaactcagataattgtatgtta 14827276  T
Q  120 cacgctaacattctaacaaaatgaat 145  Q
    ||||||||| ||| |||| |||||||    
T  14827277 cacgctaactttccaacataatgaat 14827302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 21324026 - 21324142
Alignment:
Q  4 cattaagaggagtctaatgtaccttaactaggaattcatcagtcatgtatcgg-attgtactcggggttactccacctgatacactccataaaatcaact 102  Q
    |||||||||||||| | ||||||||| ||||||||||||| || ||||  ||| |||||||||| |||||||||||| ||||||||   |||||||||||    
T  21324026 cattaagaggagtccagtgtaccttagctaggaattcatcggttatgttacgggattgtactcgaggttactccacccgatacactttgtaaaatcaact 21324125  T
Q  103 cagataattgtatgtta 119  Q
    ||||||| |||||||||    
T  21324126 cagataaatgtatgtta 21324142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 14283082 - 14283207
Alignment:
Q  4 cattaagaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactc 103  Q
    ||||||||||||||  ||| |||||| ||| ||||||||| || | |||  ||| |||| |||||||||||||||| ||| |||||| ||||| |||| |    
T  14283082 cattaagaggagtccgatgcaccttagctaagaattcatcggtaa-gtaagggaatgtattcggggttactccacccgatgcactccgtaaaagcaaccc 14283180  T
Q  104 agataattgtatgttacacgctaacat 130  Q
    |||||||||| ||||||||||||||||    
T  14283181 agataattgtttgttacacgctaacat 14283207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 10702053 - 10702130
Alignment:
Q  12 ggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactc 89  Q
    ||||||| |||||||||| |||||  |||||| ||||||||  ||||||||||||||||||||||||| ||| |||||    
T  10702053 ggagtctgatgtaccttacctaggttttcatcggtcatgtaagggattgtactcggggttactccacccgatgcactc 10702130  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 10915823 - 10915900
Alignment:
Q  12 ggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactc 89  Q
    ||||||| |||||||||| |||||  |||||| ||||||||  ||||||||||||||||||||||||| ||| |||||    
T  10915823 ggagtctgatgtaccttacctaggttttcatcggtcatgtaagggattgtactcggggttactccacccgatgcactc 10915900  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 13895033 - 13895088
Alignment:
Q  159 gctacacaaagaaaaataatcctaatcgagaaagggttttaagcttattttcaacc 214  Q
    ||||||||||||||||| || |||| ||| ||||| ||||||||||||||||||||    
T  13895033 gctacacaaagaaaaatgattctaaacgaaaaaggcttttaagcttattttcaacc 13895088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 11169732 - 11169644
Alignment:
Q  11 aggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggtta--ctccacctgatacactccataaaat 97  Q
    |||||||  ||||||||||  ||||  |||||  ||||||||| ||||||||||||||||||  ||||||| |||||||||| ||||||    
T  11169732 aggagtccgatgtaccttagttaggttttcataggtcatgtatgggattgtactcggggttactctccacccgatacactccgtaaaat 11169644  T

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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 25239368 - 25239233
Alignment:
Q  9 agaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagata 108  Q
    |||||||||| |||||||||| ||||||||||||| |||| |||| ||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  25239368 agaggagtctgatgtaccttagctaggaattcatcggtcaagtatgggattatactcggggttactccacccgatacactccgtaaaatcaattcagata 25239269  T
Q  109 attgtatgttacacgctaacattctaacaaaatgaa 144  Q
    |||||||||||||||||||| |||||||| ||||||    
T  25239268 attgtatgttacacgctaactttctaacataatgaa 25239233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 25188833 - 25188942
Alignment:
Q  4 cattaagaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactc 103  Q
    ||||||||||||||  |||||||||| |||||| |||||| || | |||  |||||||||||| |||||||||||| |||||||||  ||||||||||||    
T  25188833 cattaagaggagtccgatgtaccttagctaggatttcatcggtaaagtaagggattgtactcgaggttactccacccgatacactctgtaaaatcaactc 25188932  T
Q  104 agataattgt 113  Q
    ||||||||||    
T  25188933 agataattgt 25188942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 19440765 - 19440855
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    ||||||||||||||||  |||||| ||||||||| ||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||||    
T  19440765 atgtaccttaactaggttttcatcggtcatgtatgggagtgtactcggggttactccacccgatacaccccgtaaaatgaactcagataat 19440855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 19576915 - 19577005
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    ||||||||||||||||  |||||| ||||||||| ||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||||    
T  19576915 atgtaccttaactaggttttcatcggtcatgtatgggagtgtactcggggttactccacccgatacaccccgtaaaatgaactcagataat 19577005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 23807820 - 23807921
Alignment:
Q  9 agaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagata 108  Q
    |||||||||| |||||||||| |||||||||||||  ||| |||  |||||||| |||||||||||||| | |||||||||| |||||| |||  |||||    
T  23807820 agaggagtctgatgtaccttagctaggaattcatcgatcaagtaagggattgtaatcggggttactccatccgatacactccgtaaaatgaaccaagata 23807919  T
Q  109 at 110  Q
    ||    
T  23807920 at 23807921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 21539477 - 21539567
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    |||| ||||| |||||  |||||| ||||||||| |||||||||||||||||||||||||||   | |||| |||||| |||| |||||||    
T  21539477 atgtgccttagctaggttttcatcggtcatgtatgggattgtactcggggttactccacctggggctctccgtaaaatgaacttagataat 21539567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 24539965 - 24539845
Alignment:
Q  12 ggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataa-- 109  Q
    |||||||  ||||||||| |||||  |||||| |||| |||  ||||||||||||||||||||||||  ||| |||||| |||||| |||  ||||||      
T  24539965 ggagtctggtgtaccttagctaggttttcatctgtcaagtaagggattgtactcggggttactccactcgatgcactccgtaaaatgaaccaagataatg 24539866  T
Q  110 ttgtatgttacacgctaacat 130  Q
    |||| |||||||| |||||||    
T  24539865 ttgtttgttacacactaacat 24539845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 37984733 - 37984571
Alignment:
Q  4 cattaagaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactc 103  Q
    ||||||||||||||  |||||||||| ||||||||||||| |||| |||  |||||||||||||||||||| |||| |||||||||  | ||||||||||    
T  37984733 cattaagaggagtccgatgtaccttagctaggaattcatcggtcaagtaaaggattgtactcggggttactgcacccgatacactctgtcaaatcaactc 37984634  T
Q  104 agataa--ttgtatgttacacgctaacattctaacaaaatgaataatcatgaaacatgctaca 164  Q
    ||||||  |||| |||||||||||||| |||||||| |||||||||||||||| |||||||||    
T  37984633 agataatgttgtttgttacacgctaactttctaacataatgaataatcatgaatcatgctaca 37984571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 21231291 - 21231391
Alignment:
Q  9 agaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagata 108  Q
    |||||||| | |||||| ||| ||||||||| ||| || |||| | |||||||| |||||||||||||||| ||| || ||| |||||||||||||||||    
T  21231291 agaggagtatgatgtactttagctaggaattaatcggttatgtttaggattgtaatcggggttactccacccgattcattccttaaaatcaactcagata 21231390  T
Q  109 a 109  Q
    |    
T  21231391 a 21231391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 21218050 - 21218124
Alignment:
Q  48 atgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataattgtatgttacac 122  Q
    |||||| ||||||||||||||||||||||||| |||||| | | |||||||||||||||| | | ||||||||||    
T  21218050 atgtatgggattgtactcggggttactccacccgatacaattcgtaaaatcaactcagattactatatgttacac 21218124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 23987 - 24112
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataattgtatgtta 119  Q
    |||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  23987 atgtaccttagctaggaattcatcggtcatgtatgagattgtactcggggttactccacccgatgcactccataaaataaactcagataattgtatgtta 24086  T
Q  120 cacgctaacattctaacaaaatgaat 145  Q
    ||||||||| ||| |||| |||||||    
T  24087 cacgctaactttccaacataatgaat 24112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 21338641 - 21338732
Alignment:
Q  19 aatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    ||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  21338641 aatgtgccttagctaggaattcatcggtcatgtatgggattgtactcggggttactccacccgatacactccataaaatgaactcagataat 21338732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 6735 - 6833
Alignment:
Q  12 ggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    ||||||| |||| ||||| ||||||||||||  ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  6735 ggagtctgatgtgccttagctaggaattcataggtcatgtatgggattgtactcagggttactccacccgatacactccataaaatgaactcagataat 6833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 19106 - 19202
Alignment:
Q  14 agtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    ||||| |||||||||| ||||||||||||| |||||||||  |||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||    
T  19106 agtctgatgtaccttagctaggaattcatcggtcatgtatgagattgtactcggggttacgccacccgatacactccgtaaaatgaactcagataat 19202  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 29791082 - 29791194
Alignment:
Q  4 cattaagaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactc 103  Q
    |||| |||||||||| |||||||||| ||||||||||||| || | |||  ||||||||||||||||||||||||| |||| | ||| ||||| ||||||    
T  29791082 cattgagaggagtctgatgtaccttagctaggaattcatcggtaaagtaagggattgtactcggggttactccacccgatagattccgtaaaagcaactc 29791181  T
Q  104 agataattgtatg 116  Q
    |||||||| ||||    
T  29791182 agataattatatg 29791194  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 16878569 - 16878645
Alignment:
Q  21 tgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaat 97  Q
    ||||||||| |||||  |||||| |||| |||  ||| ||||||||||||||||||||| ||| |||||| ||||||    
T  16878569 tgtaccttagctaggttttcatcggtcaagtaagggaatgtactcggggttactccacccgatgcactccgtaaaat 16878645  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 16990702 - 16990778
Alignment:
Q  21 tgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaat 97  Q
    ||||||||| |||||  |||||| |||| |||  ||| ||||||||||||||||||||| ||| |||||| ||||||    
T  16990702 tgtaccttagctaggttttcatcggtcaagtaagggaatgtactcggggttactccacccgatgcactccgtaaaat 16990778  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 11245534 - 11245645
Alignment:
Q  4 cattaagaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactc 103  Q
    ||||||||||||||  |||||||||| ||||||||||||| || | |||  ||||||||||||||||||||||||  |||||| ||| ||||| ||||||    
T  11245534 cattaagaggagtccgatgtaccttagctaggaattcatcggtaaagtaagggattgtactcggggttactccactcgatacattccgtaaaagcaactc 11245633  T
Q  104 agataattgtat 115  Q
    || |||||||||    
T  11245634 aggtaattgtat 11245645  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 3083447 - 3083322
Alignment:
Q  12 ggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataa-- 109  Q
    |||||| | ||||||||| |||||  |||||| ||||  ||  ||| |||||||||||||||||||||||||||||||| |||||| |||  ||||||      
T  3083447 ggagtccagtgtaccttagctaggttttcatcggtcaattaagggaatgtactcggggttactccacctgatacactccgtaaaatgaaccaagataatg 3083348  T
Q  110 ttgtatgttacacgctaacattctaaca 137  Q
    |||| |||||||||||||| ||||||||    
T  3083347 ttgt-tgttacacgctaac-ttctaaca 3083322  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 39888646 - 39888529
Alignment:
Q  21 tgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataa--ttgtatgtt 118  Q
    ||||||||| |||||  |||||| |||| |||  ||| ||||||||||||||||||||| ||| |||||| |||||| |||  ||||||  |||| ||||    
T  39888646 tgtaccttagctaggttttcatcggtcaagtaagggaatgtactcggggttactccacccgatgcactccgtaaaatgaaccaagataatgttgtttgtt 39888547  T
Q  119 acacgctaacattctaaca 137  Q
    |||||||||| ||||||||    
T  39888546 acacgctaac-ttctaaca 39888529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 9345478 - 9345388
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    |||||||||| |||||  |||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||    
T  9345478 atgtaccttagctaggttttcatcggtcatgtatgggattgtactcggggttactccacccgatacactccgtaaaatgaacttagataat 9345388  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 9340441 - 9340559
Alignment:
Q  4 cattaagaggagtctaatgta-ccttaactaggaattcatcagtcatgt-atcggattgtactcggggttactccacctgat-acactccataaaatcaa 100  Q
    ||||||||||||||  ||||| ||||| ||||||||||||| || | || || || |||| |||| ||||| |||||| ||| ||||||| |||||||||    
T  9340441 cattaagaggagtccgatgtaaccttagctaggaattcatcggttacgttatgggtttgtgctcgaggttagtccacccgattacactccttaaaatcaa 9340540  T
Q  101 ctcagataattgtatgtta 119  Q
    || |||||| | |||||||    
T  9340541 cttagataactatatgtta 9340559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 16262136 - 16262080
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactcca 77  Q
    |||||||||| |||||  |||||| ||||||||  |||||||||||||||||||||||    
T  16262136 atgtaccttagctaggt-ttcatcggtcatgtaagggattgtactcggggttactcca 16262080  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 21082588 - 21082552
Alignment:
Q  109 attgtatgttacacgctaacattctaacaaaatgaat 145  Q
    |||||||||||||||||||| |||||||| |||||||    
T  21082588 attgtatgttacacgctaactttctaacataatgaat 21082552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 10215884 - 10215974
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    |||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||| |||||| ||||||| ||||    
T  10215884 atgtaccttagctaggaattcatcggtcatgtatgagattgtactcggggttactccatccgatacactccgtaaaatgaactcagttaat 10215974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 10215997 - 10216087
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    |||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||| |||||| ||||||| ||||    
T  10215997 atgtaccttagctaggaattcatcggtcatgtatgagattgtactcggggttactccatccgatacactccgtaaaatgaactcagttaat 10216087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 23308300 - 23308377
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaat 97  Q
    |||||||||| |||||  |||||| |||| |||  ||||||||||||||||||||||||| |||||||||| ||||||    
T  23308300 atgtaccttagctaggttttcatcggtcaagtaagggattgtactcggggttactccacccgatacactccgtaaaat 23308377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 24057956 - 24058082
Alignment:
Q  12 ggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataa-- 109  Q
    ||||||| |||||||||| ||||   |||||| |||| |||  ||||||||||||||||||||||||  ||| |||||| |||||| |||  ||||||      
T  24057956 ggagtctgatgtaccttagctagattttcatcggtcaagtaagggattgtactcggggttactccactcgatgcactccgtaaaatgaaccaagataatg 24058055  T
Q  110 ttgtatgttacacgctaacattctaaca 137  Q
    |||| |||||||||||||| ||||||||    
T  24058056 ttgtttgttacacgctaac-ttctaaca 24058082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 24090423 - 24090484
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctg 81  Q
    ||||| |||| |||||  |||||| ||||||||| ||||| ||||| |||||||||||||||    
T  24090423 atgtatcttagctaggttttcatcggtcatgtatgggattatactcagggttactccacctg 24090484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 9546 - 9482
Alignment:
Q  67 gggttactccacctgatacactccataaaatcaactcagataa-ttgtatgttacacgctaacat 130  Q
    ||||||||||||| | | || ||| |||||| ||||||||||| |||| ||||||||||||||||    
T  9546 gggttactccacccggtgcattccgtaaaatgaactcagataacttgtttgttacacgctaacat 9482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 5499 - 5591
Alignment:
Q  4 cattaagaggagtctaatgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaa 96  Q
    |||||| ||||||| ||||||||||| ||||||||||||| || | |||  ||||||||||||||||||||||||| |||||||||| |||||    
T  5499 cattaacaggagtccaatgtaccttagctaggaattcatcggtaaagtaagggattgtactcggggttactccacccgatacactccgtaaaa 5591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 22801015 - 22800919
Alignment:
Q  50 gtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataa--ttgtatgttacacgctaacattctaacaaaatgaat 145  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||| ||   ||||||  |||| |||||||||||||| |||||||| |||||||    
T  22801015 gtatgggattgtactcggggttactccacccgatacactccgtaaaatgaatgaagataatgttgtttgttacacgctaac-ttctaacataatgaat 22800919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 10119 - 10208
Alignment:
Q  20 atgtaccttaactaggaattcatcagtcatgtatcggattgtactcggggttactccacctgatacactccataaaatcaactcagataat 110  Q
    |||||||||| |||||  |||||| |||| |||  ||||||||||||||||||||||| | |||||||||| |||||| |||||| |||||    
T  10119 atgtaccttagctaggttttcatcggtcaagtaagggattgtactcggggttactcca-cagatacactccgtaaaatgaactcaaataat 10208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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