View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_high_18 (Length: 244)

Name: NF7807_high_18
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_high_18
NF7807_high_18
[»] chr4 (2 HSPs)
chr4 (1-231)||(7653325-7653555)
chr4 (36-102)||(9109802-9109868)
[»] chr5 (1 HSPs)
chr5 (1-231)||(21903110-21903340)
[»] chr3 (1 HSPs)
chr3 (38-231)||(20592372-20592565)
[»] chr7 (1 HSPs)
chr7 (1-231)||(11362454-11362684)
[»] chr6 (3 HSPs)
chr6 (1-103)||(4059406-4059509)
chr6 (24-85)||(7863572-7863633)
chr6 (127-231)||(4059533-4059633)
[»] chr2 (1 HSPs)
chr2 (127-231)||(33172165-33172261)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7653555 - 7653325
Alignment:
Q  1 tctcttcatcgctgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653555 tctcttcatcgctgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctat 7653456  T
Q  101 gtannnnnnnnnnnnnnnnnnnnnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaa 200  Q
    |||                       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||| |||    
T  7653455 gtatttttgttttgattttcgttttgaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttcgtcgccgcgaaa 7653356  T
Q  201 tcgtaatttctaggcaaatcttctaatctct 231  Q
    |||||||||||||| ||||||||||||||||    
T  7653355 tcgtaatttctaggtaaatcttctaatctct 7653325  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 9109868 - 9109802
Alignment:
Q  36 tgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgt 102  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  9109868 tgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaactaacttcaatctatgt 9109802  T

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Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 21903340 - 21903110
Alignment:
Q  1 tctcttcatcgctgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctat 100  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21903340 tctctccatcgctgtctctctacatcttcaacgtctgtctcaaattccagctcaaaatggtaacataactcaaatccttcttcaactaacttcaatctat 21903241  T
Q  101 gtannnnnnnnnnnnnnnnnnnnnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaa 200  Q
    |||                       |||||||||||||| |||||||||||| ||| |||||||||||||||  |||||  ||||||||| |||| |||    
T  21903240 gtatttttgttttgattttcattttgaaattgtttctcagaagctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttcgtcaccgcgaaa 21903141  T
Q  201 tcgtaatttctaggcaaatcttctaatctct 231  Q
    |||||||||||||| ||||||||||||||||    
T  21903140 tcgtaatttctaggtaaatcttctaatctct 21903110  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 231
Target Start/End: Complemental strand, 20592565 - 20592372
Alignment:
Q  38 tctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgtttct 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||    
T  20592565 tctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaattgtttct 20592466  T
Q  138 cagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctct 231  Q
    ||| |||||||||||| ||| |||||||||||||||  |||||  |||||||||||||| ||||||||||||||||| ||||| | ||||||||    
T  20592465 cagcagctatcgcacattcgccgagtcgccgtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcctgtaatctct 20592372  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11362454 - 11362684
Alignment:
Q  1 tctcttcatcgctgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatcc-ttcttcaactaacttcaatcta 99  Q
    ||||| ||||| |||||| || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11362454 tctctacatcgttgtctcgctacatcttcaacgtcggtctcaaattccagctcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatcta 11362553  T
Q  100 tgtannnnnnnnnnnnnnnnnnnnnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaa 199  Q
    ||||                       |||||||||||| | |||||||||||||||| |||||||||||||||   || ||  |||||||||| || ||    
T  11362554 tgtatttttgtttcgattttcattttgaaattgtttctctgaagctatcgcacaatcgccgagtcgccgtgaaaccatg-ttcctcttcgtcgctgcgaa 11362652  T
Q  200 atcgtaatttctaggcaaatcttctaatctct 231  Q
    ||||||||||||||| ||||||||||||||||    
T  11362653 atcgtaatttctaggtaaatcttctaatctct 11362684  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4059406 - 4059509
Alignment:
Q  1 tctcttcatcgctgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatcc-ttcttcaactaacttcaatcta 99  Q
    ||||| |||||||||||| || ||||||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4059406 tctctccatcgctgtctcgctacatcttcaacgtcggtctcaaattccagatcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatcta 4059505  T
Q  100 tgta 103  Q
    ||||    
T  4059506 tgta 4059509  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 7863633 - 7863572
Alignment:
Q  24 atcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaa 85  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  7863633 atcttcaacgtctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaa 7863572  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 4059533 - 4059633
Alignment:
Q  127 aaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaa 226  Q
    ||||||||||||   |||||||||||||||| |||||||||||||||   |||    || || ||| ||| | ||||||||||||||| |||||||||||    
T  4059533 aaattgtttctctaaagctatcgcacaatcgccgagtcgccgtgaaaccatgt----tcctcttcgtcgcgacatcgtaatttctaggtaaatcttctaa 4059628  T
Q  227 tctct 231  Q
    |||||    
T  4059629 tctct 4059633  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 33172165 - 33172261
Alignment:
Q  127 aaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaa 226  Q
    |||||||||||||| ||||||||||||        ||||||||||||   ||||  |||||| ||||||| ||||||||||||||||| |||||||||||    
T  33172165 aaattgtttctcagcagctatcgcaca--------gtcgccgtgaaaccttgttccgtcttcatcgccgcgaaatcgtaatttctaggtaaatcttctaa 33172256  T

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