View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7807_high_21 (Length: 236)
Name: NF7807_high_21
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7807_high_21 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 12103 - 11915
Alignment:
| Q |
27 |
cttaggacaccttgactcaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggagaa |
126 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12103 |
cttaggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggggaa |
12004 |
T |
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| Q |
127 |
cctccatcatcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcataacatcaaccgt |
215 |
Q |
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| T |
12003 |
cctccatcatcagaaagataaatagaaagtttattagaagggtagtccattgcaatagcagaaataacagtgttcataacatcaaccgt |
11915 |
T |
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Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 27 - 211
Target Start/End: Original strand, 16385730 - 16385914
Alignment:
| Q |
27 |
cttaggacaccttgactcaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggagaa |
126 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |
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| T |
16385730 |
cttaggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaataccaaaaagagtaacaggagaa |
16385829 |
T |
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| Q |
127 |
cctccatcatcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcataacatcaa |
211 |
Q |
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| T |
16385830 |
cctccatcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaa |
16385914 |
T |
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Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 17588882 - 17589070
Alignment:
| Q |
27 |
cttaggacaccttgactcaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggagaa |
126 |
Q |
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||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||| |
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| T |
17588882 |
cttaggacaccttgacttaacaccatatttcttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaatcccaaatagagtaatggtagaa |
17588981 |
T |
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| Q |
127 |
cctccatcatcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcataacatcaaccgt |
215 |
Q |
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| T |
17588982 |
cctccatcatcagaaagataaatagaaagtttatcaggagggtaatccatagcaatagcagaaacaacagtgttcataacttctaccgt |
17589070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 270494 - 270306
Alignment:
| Q |
27 |
cttaggacaccttgactcaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggagaa |
126 |
Q |
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||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |||| |
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| T |
270494 |
cttaggacaccttgactttacaccatattttttacaaaagggaacccatactttagcaaattgagtagcctctttaatcccaaaaagagtaatagcagaa |
270395 |
T |
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| Q |
127 |
cctccatcatcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcataacatcaaccgt |
215 |
Q |
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| T |
270394 |
gcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgt |
270306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 32723353 - 32723447
Alignment:
| Q |
115 |
gtaataggagaacctccatcatcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcataacatc |
209 |
Q |
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|||||||| ||||| ||||||||||||| ||| | | |||||| | || || ||||||||||| ||||| || | |||||||||||||||||| |
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| T |
32723353 |
gtaataggcgaaccaccatcatcagaaacatacacatgaagtttctcaggtggataatccattgccatagctgataaaacagtgttcataacatc |
32723447 |
T |
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