View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7807_high_3 (Length: 564)
Name: NF7807_high_3
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7807_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 306 - 547
Target Start/End: Original strand, 16700809 - 16701050
Alignment:
| Q |
306 |
gtcttgttgtcagcaaaactattataaaataaggacaagttattttgttggctaactcactttatttttaatnnnnnnncaacaacacacatctattttg |
405 |
Q |
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| T |
16700809 |
gtcttgttgtcagcaaaactatcataaaataaggacaagttattttgttggctaactcactttatttttaataaaaaaacaacaacacacatctattttg |
16700908 |
T |
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| Q |
406 |
acatatcagaatggcgtggcaaaataattcaactcattttaccaactttattctagtagcatataatgacgtttaatattttgagtttttcaatataata |
505 |
Q |
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| T |
16700909 |
acatatcagaatggcgtggcaaaataattcaactcattttaccaactttattctagtagcatataatgacgtttaatattttgagtttttcaatattata |
16701008 |
T |
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| Q |
506 |
ataagattttgaacacaatagcttatattgtggacaagttat |
547 |
Q |
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| T |
16701009 |
ataagattttgaacacaatagcttatattgtggacaagttat |
16701050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 16700502 - 16700728
Alignment:
| Q |
1 |
tttagtgcaaacaaaaattcttaagtaactttgttcaataatccacaagttttacataaccatcatattaatatcacataatccaacaaaatat--tata |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16700502 |
tttagtgcaaacaaaaattcttaagtaactttgttcaataatccaaaagttttacataaccatcatattaatatcacataatccaacaaaatatattata |
16700601 |
T |
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| Q |
99 |
aacaaactattaattagtgtagggttatgcaacaaaatgaacatatcatatgaatataatctatgatacattttattccctaatctcaactttttaaagg |
198 |
Q |
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| T |
16700602 |
aacaaactattaattagtgtagggttatgcaacaaaatgaacatatcatatgaatataatatatgatacattttattccctaatctcaactttttaaagg |
16700701 |
T |
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| Q |
199 |
cattatctcaaacttaaaccaattcca |
225 |
Q |
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| T |
16700702 |
cattatctcaaacttaaaccaattcca |
16700728 |
T |
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