View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_high_9 (Length: 400)

Name: NF7807_high_9
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_high_9
NF7807_high_9
[»] chr4 (15 HSPs)
chr4 (1-219)||(12320497-12320715)
chr4 (234-392)||(12320202-12320360)
chr4 (253-392)||(12312052-12312191)
chr4 (109-219)||(43515782-43515893)
chr4 (130-219)||(7853388-7853476)
chr4 (125-208)||(3643087-3643170)
chr4 (111-218)||(5627585-5627691)
chr4 (105-194)||(35372032-35372121)
chr4 (140-218)||(55147627-55147705)
chr4 (105-218)||(23870141-23870252)
chr4 (102-204)||(37226342-37226444)
chr4 (1-37)||(12313202-12313238)
chr4 (152-209)||(7745948-7746006)
chr4 (105-214)||(2113937-2114046)
chr4 (178-218)||(29118566-29118606)
[»] chr6 (14 HSPs)
chr6 (110-219)||(4337556-4337665)
chr6 (108-218)||(33344915-33345024)
chr6 (127-221)||(34969858-34969952)
chr6 (108-218)||(35121874-35121982)
chr6 (131-219)||(9815621-9815708)
chr6 (99-207)||(12174425-12174533)
chr6 (130-218)||(34329770-34329858)
chr6 (115-218)||(31787909-31788009)
chr6 (105-218)||(34573110-34573221)
chr6 (152-209)||(18991743-18991800)
chr6 (136-215)||(11274649-11274729)
chr6 (153-209)||(32331517-32331573)
chr6 (105-162)||(31246259-31246316)
chr6 (170-206)||(19638396-19638432)
[»] chr2 (12 HSPs)
chr2 (133-219)||(34909265-34909351)
chr2 (106-219)||(16547757-16547870)
chr2 (107-218)||(36186534-36186645)
chr2 (151-219)||(5163885-5163953)
chr2 (151-218)||(37912387-37912454)
chr2 (113-218)||(2886956-2887060)
chr2 (109-198)||(15925949-15926038)
chr2 (99-205)||(14952081-14952184)
chr2 (131-218)||(30257728-30257815)
chr2 (170-218)||(4206326-4206374)
chr2 (151-209)||(16646927-16646985)
chr2 (137-197)||(34346042-34346101)
[»] chr5 (10 HSPs)
chr5 (112-208)||(25034282-25034378)
chr5 (99-219)||(10325516-10325639)
chr5 (99-218)||(20870724-20870841)
chr5 (108-218)||(7886539-7886647)
chr5 (137-218)||(32257639-32257720)
chr5 (105-218)||(3193444-3193557)
chr5 (131-218)||(18626752-18626835)
chr5 (130-173)||(20017605-20017648)
chr5 (150-215)||(3596879-3596944)
chr5 (108-205)||(27548459-27548555)
[»] chr1 (13 HSPs)
chr1 (105-218)||(1240525-1240638)
chr1 (108-218)||(35405430-35405539)
chr1 (105-218)||(29062288-29062401)
chr1 (151-218)||(22667163-22667230)
chr1 (107-218)||(49762375-49762485)
chr1 (131-218)||(15102999-15103082)
chr1 (141-218)||(23897857-23897937)
chr1 (106-218)||(1153648-1153760)
chr1 (132-218)||(35383763-35383848)
chr1 (133-178)||(33735695-33735740)
chr1 (136-215)||(35204171-35204251)
chr1 (131-194)||(8246665-8246726)
chr1 (152-216)||(36382974-36383038)
[»] chr8 (8 HSPs)
chr8 (110-218)||(13580286-13580393)
chr8 (99-210)||(4350581-4350691)
chr8 (115-218)||(13236276-13236379)
chr8 (140-218)||(43872601-43872679)
chr8 (171-209)||(24606874-24606912)
chr8 (105-215)||(34142149-34142257)
chr8 (136-215)||(12181916-12181997)
chr8 (136-215)||(12426344-12426425)
[»] chr7 (12 HSPs)
chr7 (106-209)||(12177910-12178010)
chr7 (108-218)||(3351174-3351283)
chr7 (137-219)||(22318618-22318700)
chr7 (153-218)||(35812709-35812774)
chr7 (130-209)||(26914291-26914369)
chr7 (152-218)||(15133276-15133342)
chr7 (130-219)||(42335892-42335981)
chr7 (105-218)||(21828254-21828367)
chr7 (109-218)||(40351695-40351802)
chr7 (105-163)||(31799689-31799747)
chr7 (152-218)||(26448466-26448533)
chr7 (99-215)||(48393197-48393312)
[»] chr3 (10 HSPs)
chr3 (151-218)||(11365141-11365208)
chr3 (109-215)||(47000793-47000898)
chr3 (105-218)||(27538709-27538820)
chr3 (110-218)||(11383687-11383791)
chr3 (122-216)||(52704590-52704684)
chr3 (110-214)||(19149782-19149887)
chr3 (103-218)||(33290792-33290908)
chr3 (152-215)||(42417975-42418038)
chr3 (106-218)||(33510019-33510132)
chr3 (107-163)||(24252032-24252087)
[»] scaffold1173 (1 HSPs)
scaffold1173 (114-218)||(422-525)
[»] scaffold0527 (2 HSPs)
scaffold0527 (133-218)||(1739-1824)
scaffold0527 (133-218)||(9802-9887)
[»] scaffold0531 (1 HSPs)
scaffold0531 (137-219)||(9794-9878)
[»] scaffold0007 (1 HSPs)
scaffold0007 (129-173)||(4447-4491)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 12320715 - 12320497
Alignment:
Q  1 cgccaagagatatgaattttcccctatatataagataatgatgttattaatggtgaagaataagtgcatttttatgagaaaaatttcatgtgttaggtag 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12320715 cgccaagagatatgaattttcccctaaatataagataatgatgttattgatggtgaagaataagtgcatttttatgagaaaaatgtcatgtgttaggtag 12320616  T
Q  101 ggttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatat 200  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320615 ggttggtccgaagatttttggtgtcctgaacaaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatat 12320516  T
Q  201 tcatttatattcaaagttt 219  Q
    ||||||||| || ||||||    
T  12320515 tcatttataatcgaagttt 12320497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 234 - 392
Target Start/End: Complemental strand, 12320360 - 12320202
Alignment:
Q  234 ctcaatatgattaatcatgattacccttgtatttgaatagcagtttctctaagtattgaaccaacaccaagctgatcaagtgcatgccatccattagctt 333  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320360 ctcaatataattaatcatgattacccttgtatttgaatagcagtttctctaagtattgaaccaacaccaagctgatcaagtgcatgccatccattagctt 12320261  T
Q  334 gaacaattatagctgcacctgtagctctcaactcctctgatctttctaacaccaaactc 392  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320260 gcacaattatagctgcacctgtagctctcaactcctctgatctttctaacaccaaactc 12320202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 253 - 392
Target Start/End: Complemental strand, 12312191 - 12312052
Alignment:
Q  253 attacccttgtatttgaatagcagtttctctaagtattgaaccaacaccaagctgatcaagtgcatgccatccattagcttgaacaattatagctgcacc 352  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12312191 attacccatgtatttgaatagcagtttctctaagtattgaaccaacaccaagctgatcaagtgcatgccatccattagcttgaacaattatagctgcccc 12312092  T
Q  353 tgtagctctcaactcctctgatctttctaacaccaaactc 392  Q
    ||| |||| ||| ||||||||| |||||||||||||||||    
T  12312091 tgtggctcgcaattcctctgatttttctaacaccaaactc 12312052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 43515782 - 43515893
Alignment:
Q  109 ctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttaca-ttttttgttgcaaaatattcattta 207  Q
    ||||||||||| ||||||||  ||||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  43515782 ctaagatttttggtgtcctgggcgaaacaataaaattgtgcccttttagttattctaatagttttcttcttacatttttttgttgcaaaagattcattta 43515881  T
Q  208 tattcaaagttt 219  Q
    || |||||||||    
T  43515882 taatcaaagttt 43515893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 7853476 - 7853388
Alignment:
Q  130 acgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagttt 219  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||| |||||||  ||||||||||| |||||||||    
T  7853476 acgaaacaataaaattgtacccttttaattatttcaatagttttcttcttacat-ttttattgcaaagaattcatttataatcaaagttt 7853388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 3643087 - 3643170
Alignment:
Q  125 cctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttat 208  Q
    ||||| ||||||||||||||||||   ||||||||||||||||| ||||||||||  ||||||||||||| || ||||||||||    
T  3643087 cctgagcgaaacaataaaattgtgtcattttaattattccaatatttttcttcttggattttttgttgcacaaaattcatttat 3643170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 5627691 - 5627585
Alignment:
Q  111 aagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatat 210  Q
    |||||||||  || |||| ||||||||||||| |  ||| ||||||||||||| |||| ||||||| || |||||||||||||||||||||||||||||     
T  5627691 aagatttttgatgccctggacgaaacaataaa-tcatgcccttttaattattcaaatatttttcttattgcattttttgttgcaaaatattcatttataa 5627593  T
Q  211 tcaaagtt 218  Q
    ||| ||||    
T  5627592 tcagagtt 5627585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 35372032 - 35372121
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgca 194  Q
    |||| ||| |||||| ||| |||| || |||||||||| ||||||  |||||| ||||| |||| |||||||||||||||||||||||||    
T  35372032 ggtcataaaatttttggtgccctggacaaaacaataaagttgtgccattttaaatattctaatatttttcttcttacattttttgttgca 35372121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 55147627 - 55147705
Alignment:
Q  140 aaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||||||||||||||||||||||| |||| ||||| | ||  ||||||||||| | || ||||||||||| ||||||||    
T  55147627 aaaattgtgctcttttaattattctaatatttttcatattctattttttgttgtacaagattcatttataatcaaagtt 55147705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 23870252 - 23870141
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    ||||||||||||||| ||| | ||  |||||||||||| |||  |  ||||||||||| ||||  |||| ||||| | ||||||||||||||||||||||    
T  23870252 ggtcctaagatttttggtgccttggccgaaacaataaa-ttgaacctttttaattattacaattttttt-ttcttgctttttttgttgcaaaatattcat 23870155  T
Q  205 ttatattcaaagtt 218  Q
    ||||| ||||||||    
T  23870154 ttataatcaaagtt 23870141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 37226444 - 37226342
Alignment:
Q  102 gttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatatt 201  Q
    ||||||| |||||| ||| ||||| || ||||| ||||||||| ||| |||||||||||||  |||   ||| || || ||||||||||||||||| |||    
T  37226444 gttggtcttaagatctttggtgtcttggacgaatcaataaaatcgtgttcttttaattatttgaatgtcttttttatttcattttttgttgcaaaagatt 37226345  T
Q  202 cat 204  Q
    |||    
T  37226344 cat 37226342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12313238 - 12313202
Alignment:
Q  1 cgccaagagatatgaattttcccctatatataagata 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  12313238 cgccaagagatatgaattttcccctaaatataagata 12313202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 7745948 - 7746006
Alignment:
Q  152 ttttaattattccaatagttttcttcttacattttttgttgcaaaat-attcatttata 209  Q
    |||||||||||| ||||  ||||||||| |||||||||||| ||||| |||||||||||    
T  7745948 ttttaattattcaaatatctttcttcttgcattttttgttggaaaataattcatttata 7746006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 2114046 - 2113937
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    ||||||||||||||||||| ||| | |||| |||||||| | ||  ||||||||||||  |||   |||||||||  ||||||| |||||||| ||| ||    
T  2114046 ggtcctaagatttttagtgccctaagcgaatcaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaat 2113947  T
Q  205 ttatattcaa 214  Q
    | ||| ||||    
T  2113946 tcataatcaa 2113937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 29118606 - 29118566
Alignment:
Q  178 ttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||||| |||||||||||||||| ||| ||||||||    
T  29118606 ttacattttttattgcaaaatattcattcataatcaaagtt 29118566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 4337556 - 4337665
Alignment:
Q  110 taagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttata 209  Q
    |||||||||| ||||||||||| ||| |||||||||||||  |||||||||||| ||||| |||||||||||||||||||||| |||| ||| |||||||    
T  4337556 taagatttttggtgtcctgaacaaaataataaaattgtgccattttaattattctaatagctttcttcttacattttttgttgtaaaagatttatttata 4337655  T
Q  210 ttcaaagttt 219  Q
     |||||||||    
T  4337656 atcaaagttt 4337665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 33345024 - 33344915
Alignment:
Q  108 cctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattta 207  Q
    |||||||||||| ||| |||| ||||||||||||| || ||| ||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||    
T  33345024 cctaagatttttggtgccctggacgaaacaataaa-ttatgcccttttaattattcaaatatttttcttctagcattttttgttgcaaaatattcattta 33344926  T
Q  208 tattcaaagtt 218  Q
    || ||||||||    
T  33344925 taatcaaagtt 33344915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 34969952 - 34969858
Alignment:
Q  127 tgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtttct 221  Q
    |||||||||||| ||||| |||| ||||| | |||||||||| |||||||||| |||||||||||| |||| ||||||||||| |||||||||||    
T  34969952 tgaacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcatttatagtcaaagtttct 34969858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 35121874 - 35121982
Alignment:
Q  108 cctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattta 207  Q
    |||||||||||| ||| |||| ||||||||||||| || ||| ||||||||||||| |||| |||||||||  |||||| ||||||||||||||||||||    
T  35121874 cctaagatttttggtgccctggacgaaacaataaa-ttatgcccttttaattattcaaatatttttcttctagcatttt-tgttgcaaaatattcattta 35121971  T
Q  208 tattcaaagtt 218  Q
    || ||||||||    
T  35121972 taatcaaagtt 35121982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 9815621 - 9815708
Alignment:
Q  131 cgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagttt 219  Q
    ||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||| ||||| | ||||||||| ||| |||||    
T  9815621 cgaaacaataaaattgtgcccttttaattattctaatattattcttcttgcattttttgttacaaaa-actcatttataatcatagttt 9815708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 12174533 - 12174425
Alignment:
Q  99 agggttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaat 198  Q
    |||| |||| || |||||||| ||||| || ||||||||||||||||||| | ||||| ||||| ||||| ||| |||||| || |||||||| |||||     
T  12174533 agggctggttctgagatttttggtgtcatggacgaaacaataaaattgtgttgttttatttatttcaatattttccttcttgcagtttttgttacaaaag 12174434  T
Q  199 attcattta 207  Q
    |||||||||    
T  12174433 attcattta 12174425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 34329770 - 34329858
Alignment:
Q  130 acgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||||||||||||||  ||| ||||||||||||| |||| |||||||||| ||||||||||||||||| ||  |||||||  |||||||    
T  34329770 acgaaacaataaaatcatgcccttttaattattctaatatttttcttcttgcattttttgttgcaaaagatctatttataagcaaagtt 34329858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 31788009 - 31787909
Alignment:
Q  115 tttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaa 214  Q
    ||||| |||||||| ||||||||||||| |||| |  ||||||||||| ||||| ||||  |||| ||||||| ||||||||||||||||||||| | ||    
T  31788009 tttttggtgtcctggacgaaacaataaa-ttgtacctttttaattatttcaatattttt--tcttgcatttttagttgcaaaatattcatttataattaa 31787913  T
Q  215 agtt 218  Q
    ||||    
T  31787912 agtt 31787909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 34573110 - 34573221
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    |||| ||||||||||  ||||||  || ||||||||||||||||| |||| || ||||| |||| ||||||| || |||| ||| ||  |||| ||||||    
T  34573110 ggtcttaagatttttgatgtcctagacaaaacaataaaattgtgccctttaaaatattcaaatatttttctttttgcattctttttt--aaaagattcat 34573207  T
Q  205 ttatattcaaagtt 218  Q
    ||||| ||||||||    
T  34573208 ttataatcaaagtt 34573221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 18991743 - 18991800
Alignment:
Q  152 ttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttata 209  Q
    |||||| |||| ||||| |||||||||| |||||||||||||| || |||||||||||    
T  18991743 ttttaactatttcaatatttttcttcttgcattttttgttgcacaagattcatttata 18991800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 11274729 - 11274649
Alignment:
Q  136 caataaaattgtgctctttt-aattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaa 215  Q
    ||||||||||||| |||||| || |||||||||  |||| |||||  | |||||||||||||||||||||| ||| |||||    
T  11274729 caataaaattgtgttctttttaactattccaatgttttttttcttgtactttttgttgcaaaatattcattcataatcaaa 11274649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 32331517 - 32331573
Alignment:
Q  153 tttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttata 209  Q
    |||||||| || |||| ||||||||||| |||||||||||||||| ||| |||||||    
T  32331517 tttaattagtcaaatacttttcttcttatattttttgttgcaaaagatttatttata 32331573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 31246259 - 31246316
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattatt 162  Q
    |||||||||||||| |||| ||||||||||  ||||||||||||   |||||||||||    
T  31246259 ggtcctaagattttaagtgccctgaacgaattaataaaattgtgtcattttaattatt 31246316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 19638396 - 19638432
Alignment:
Q  170 ttttcttcttacattttttgttgcaaaatattcattt 206  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  19638396 ttttcttcttacattttttgttgtaaaagattcattt 19638432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 34909265 - 34909351
Alignment:
Q  133 aaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagttt 219  Q
    ||||||||||||| ||  |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34909265 aaacaataaaattttgtccttttaattatttcaataattttcttcttacattttttgttgcaaaatattcatttatagtcaaagttt 34909351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 16547870 - 16547757
Alignment:
Q  106 gtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatt 205  Q
    |||||||||||||| |||  ||| |||||||||||||||||||  ||||||||  || ||||||||||||||||||||||||||||| |||| || ||||    
T  16547870 gtcctaagattttttgtgctctggacgaaacaataaaattgtgtccttttaatagtttcaatagttttcttcttacattttttgttgtaaaagatccatt 16547771  T
Q  206 tatattcaaagttt 219  Q
    |||| |||||||||    
T  16547770 tataatcaaagttt 16547757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 36186534 - 36186645
Alignment:
Q  107 tcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattt 206  Q
    ||||||||||||| ||| ||| ||||||||  ||||||| ||  ||||||||||||| |||  |||||||| ||||||||||||||||||| ||| ||||    
T  36186534 tcctaagatttttggtgccctaaacgaaacggtaaaattttgtccttttaattattctaatgtttttcttcatacattttttgttgcaaaagatttattt 36186633  T
Q  207 atattcaaagtt 218  Q
    ||| ||||||||    
T  36186634 ataatcaaagtt 36186645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 5163953 - 5163885
Alignment:
Q  151 cttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagttt 219  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  5163953 ctttttattatttcaatagttttcttcttacattttttgttacaaaagattcatttataatcaaagttt 5163885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 37912454 - 37912387
Alignment:
Q  151 cttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  37912454 cttttaattattcaaatatttttctccttacattgtttgttgcaaaatattcatttataatcaaagtt 37912387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 2886956 - 2887060
Alignment:
Q  113 gatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattc 212  Q
    ||||||||||| ||| ||| ||||||||||||||| |  |||||||||||| |||| |||||||||| |||||||||||| | |  ||| ||||||| ||    
T  2886956 gatttttagtg-ccttaacaaaacaataaaattgtacctttttaattattctaatacttttcttcttgcattttttgttgtagatgatttatttataatc 2887054  T
Q  213 aaagtt 218  Q
    ||||||    
T  2887055 aaagtt 2887060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 15926038 - 15925949
Alignment:
Q  109 ctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaat 198  Q
    ||||||||||| ||||| |||  ||| |||||||||||| |  || ||||||||  |||| |||||||||||||||||||||||||||||    
T  15926038 ctaagattttttgtgtcatgagtgaatcaataaaattgtacctttataattatttaaatatttttcttcttacattttttgttgcaaaat 15925949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 14952184 - 14952081
Alignment:
Q  99 agggttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaat 198  Q
    ||||| || ||||||||||||  |||| ||||||||  ||||||   ||||  |||||||||||| ||||  |||||| ||||| |||||||||||||||    
T  14952184 agggtcggccctaagatttttgatgtcttgaacgaattaataaa---gtgcatttttaattattcgaatatctttctttttacaatttttgttgcaaaat 14952088  T
Q  199 attcatt 205  Q
    |||||||    
T  14952087 attcatt 14952081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 30257728 - 30257815
Alignment:
Q  131 cgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||||| ||||||| ||||||| ||||  |||| ||||  |||| ||||||||||| ||||| ||| ||||||| ||||||||    
T  30257728 cgaaacaataagattgtgcccttttaaatattttaatattttttatcttgcattttttgtttcaaaagatttatttataatcaaagtt 30257815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 4206326 - 4206374
Alignment:
Q  170 ttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||| ||||| ||||||||||||||||||||||||||||| | ||||||    
T  4206326 tttttttcttgcattttttgttgcaaaatattcatttataattaaagtt 4206374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 16646927 - 16646985
Alignment:
Q  151 cttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttata 209  Q
    ||||||||||||  |||| ||||||||||  ||||||||||||| || |||||||||||    
T  16646927 cttttaattattttaatatttttcttcttttattttttgttgcacaagattcatttata 16646985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 34346101 - 34346042
Alignment:
Q  137 aataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaa 197  Q
    |||||||||||| | |||||| ||||| |||| ||||||||||  ||||||||||||||||    
T  34346101 aataaaattgtgat-ttttaaatattctaatatttttcttcttgtattttttgttgcaaaa 34346042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 25034282 - 25034378
Alignment:
Q  112 agatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttat 208  Q
    |||||||| |||||||| |||||||||||||||| ||   ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  25034282 agatttttggtgtcctggacgaaacaataaaattatgtcattttaattacttcaatagttttcttcttacattttttgttgcaaaaaattcatttat 25034378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 10325516 - 10325639
Alignment:
Q  99 agggttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttac---attttttgttgcaa 195  Q
    ||||| ||| ||||||| ||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||  || |||    |||||||||||||    
T  10325516 agggtcggttctaagatatttggtgtcctggacgaaacaataaaattgtgcccttttaattattccgatagttttaatcctacttttttttttgttgcaa 10325615  T
Q  196 aatattcatttatattcaaagttt 219  Q
    || ||||||||||  |||||||||    
T  10325616 aagattcatttatgatcaaagttt 10325639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 20870841 - 20870724
Alignment:
Q  99 agggttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaat 198  Q
    ||||| |||||||  |||||||||| |||| ||||||||||||| |||| |  |||||||||||  |||| |||| ||||| |||||||||||||| |||    
T  20870841 agggtcggtcctagaatttttagtgccctggacgaaacaataaa-ttgtaccattttaattattttaatattttt-ttcttgcattttttgttgcagaat 20870744  T
Q  199 attcatttatattcaaagtt 218  Q
    ||||||||||| ||||||||    
T  20870743 attcatttataatcaaagtt 20870724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 7886539 - 7886647
Alignment:
Q  108 cctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattta 207  Q
    |||||||||||| |||||| |  |||||||||||| ||||||  |||||||||||| || | |||||||||||| ||||||||| ||||||||||| |||    
T  7886539 cctaagatttttggtgtcccgggcgaaacaataaa-ttgtgccattttaattattcaaacatttttcttcttac-ttttttgttccaaaatattcactta 7886636  T
Q  208 tattcaaagtt 218  Q
    || ||||||||    
T  7886637 taatcaaagtt 7886647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 32257639 - 32257720
Alignment:
Q  137 aataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||| ||||| |||||||||||||||||  |||| ||||| ||||||||||| || || ||||||||||| ||||||||    
T  32257639 aataaaactgtgcccttttaattattccaatttttttgttcttgcattttttgttacacaaaattcatttataatcaaagtt 32257720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 3193444 - 3193557
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    ||||||||||||||||| | ||||  ||||  ||||||||| ||  ||||||||||||  |||   ||||||||| |||||||| |||||||| ||||||    
T  3193444 ggtcctaagatttttagcgccctgggcgaattaataaaattatgtccttttaattatttgaatgtctttcttcttgcattttttattgcaaaagattcat 3193543  T
Q  205 ttatattcaaagtt 218  Q
    | ||| ||||||||    
T  3193544 tcataatcaaagtt 3193557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 18626835 - 18626752
Alignment:
Q  131 cgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||||||||||||  ||||||||||||  |||| ||||||| |   ||||||||||||| || ||||||||||| ||||||||    
T  18626835 cgaaacaataaaattgtgtccttttaattattttaata-ttttcttgt---attttttgttgcacaagattcatttataatcaaagtt 18626752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 20017648 - 20017605
Alignment:
Q  130 acgaaacaataaaattgtgctcttttaattattccaatagtttt 173  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||    
T  20017648 acgaaacaataaaattgtgcccttttaattattctaatattttt 20017605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 3596879 - 3596944
Alignment:
Q  150 tcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaa 215  Q
    |||||||||||||| |||| |||| || ||| ||||||| || ||||| ||||| |||||||||||    
T  3596879 tcttttaattattctaatacttttatttttatattttttttttcaaaagattcacttatattcaaa 3596944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 27548459 - 27548555
Alignment:
Q  108 cctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatt 205  Q
    ||||||| ||||  ||||||| ||||| ||||||| |||||| ||||||||||||| |||   |||||||||| |||||||  ||| ||| |||||||    
T  27548459 cctaagacttttgatgtcctgtacgaatcaataaagttgtgc-cttttaattattcaaatgtctttcttcttatattttttagtgcgaaaaattcatt 27548555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 1240638 - 1240525
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    |||||||||||| || ||| | || |||||||||||||||||||| ||||||||||| |  ||| |||||||||| ||||||||||||||||| ||||||    
T  1240638 ggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctgatatttttcttcttgcattttttgttgcaaaagattcat 1240539  T
Q  205 ttatattcaaagtt 218  Q
    ||||| || |||||    
T  1240538 ttataatcgaagtt 1240525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 35405539 - 35405430
Alignment:
Q  108 cctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattta 207  Q
    ||||||||||||  ||  |||| |||||||||||  ||| || ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||     
T  35405539 cctaagatttttgttgcactgagcgaaacaataat-ttgcgcccttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttc 35405441  T
Q  208 tattcaaagtt 218  Q
    || ||||||||    
T  35405440 taatcaaagtt 35405430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 29062288 - 29062401
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    |||| |||||||||| ||||  | ||||||||||||||||  |||||||||||||| |||||||  |||||||||  |||||||||||||||| ||| ||    
T  29062288 ggtcttaagatttttggtgttttaaacgaaacaataaaataatgctcttttaattactccaatatatttcttcttgtattttttgttgcaaaagatttat 29062387  T
Q  205 ttatattcaaagtt 218  Q
    ||||| | ||||||    
T  29062388 ttataataaaagtt 29062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 22667163 - 22667230
Alignment:
Q  151 cttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  22667163 cttttaattattcaaatatttttcttcttgcattttttattgcaaaatattcatttataatcaaagtt 22667230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 49762375 - 49762485
Alignment:
Q  107 tcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattt 206  Q
    |||||||||||||  || | || |||||||||||||||||||   |||||||||||| |||| ||||||||||| |||||||||| || || | ||||||    
T  49762375 tcctaagatttttgatgccttggacgaaacaataaaattgtgtctttttaattattctaata-ttttcttcttatattttttgttacacaaaactcattt 49762473  T
Q  207 atattcaaagtt 218  Q
    ||| ||||||||    
T  49762474 ataatcaaagtt 49762485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 15102999 - 15103082
Alignment:
Q  131 cgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||| |   ||||||||||||| || ||||||||||| ||||||||    
T  15102999 cgaaacaataaaattgtgttcttttaattatttcaata-ttttcttgt---attttttgttgcacaagattcatttataatcaaagtt 15103082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 23897857 - 23897937
Alignment:
Q  141 aaattgtgctcttttaatt-attccaatagttttcttcttacatttt--ttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||| ||||||||| |||| |||| |||||||||| ||||||  ||||||||||||||||||||||| ||||||||    
T  23897857 aaattgtgcccttttaatttattcaaatatttttcttcttgcattttttttgttgcaaaatattcatttataatcaaagtt 23897937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 1153648 - 1153760
Alignment:
Q  106 gtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatt 205  Q
    |||||||||||||| ||||||||  |||| ||||||| |||| |  |||||||||| | ||||  ||||||||| | ||||||||||||||| ||| |||    
T  1153648 gtcctaagatttttggtgtcctgtgcgaatcaataaagttgtaccgttttaattatccgaatatctttcttcttgcgttttttgttgcaaaagattaatt 1153747  T
Q  206 tatattcaaagtt 218  Q
     | | ||||||||    
T  1153748 gaaaatcaaagtt 1153760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 35383763 - 35383848
Alignment:
Q  132 gaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||||||| ||||||||   |||||||||||| ||||  ||||| |||||| ||||||||||||||  |||||||||| ||||||||    
T  35383763 gaaacaatcaaattgtgtcattttaattattctaatatatttctacttaca-tttttgttgcaaaagtttcatttataatcaaagtt 35383848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 33735695 - 33735740
Alignment:
Q  133 aaacaataaaattgtgctcttttaattattccaatagttttcttct 178  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  33735695 aaacaataaaattgtgcccttttaattattttaatagttttcttct 33735740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 35204171 - 35204251
Alignment:
Q  136 caataaaattgtgctctttt-aattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaa 215  Q
    ||||||||||||| |||||| ||||||||||||  |||| |||||  | ||||| |||||||||||||||| ||| |||||    
T  35204171 caataaaattgtgttctttttaattattccaatgttttttttcttgtactttttattgcaaaatattcattcataatcaaa 35204251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 8246665 - 8246726
Alignment:
Q  131 cgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgca 194  Q
    ||||| |||||||||||| |||| |||||| |||||||  ||| |||||| |||||||||||||    
T  8246665 cgaaataataaaattgtgttcttctaattactccaata--ttttttcttatattttttgttgca 8246726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 36383038 - 36382974
Alignment:
Q  152 ttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaag 216  Q
    |||||||||||  |||  |||||||| ||||||||||||||  ||||||||||| ||| ||||||    
T  36383038 ttttaattatttgaatgtttttcttcatacattttttgttgtgaaatattcattcataatcaaag 36382974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 13580286 - 13580393
Alignment:
Q  110 taagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttata 209  Q
    |||||||||| |||||||| ||||||||||||| || || |||||||||||||| |||| ||||  |||| |||||||||||||||||||||||||||||    
T  13580286 taagatttttggtgtcctggacgaaacaataaa-ttatgttcttttaattattctaatattttttgtcttgcattttttgttgcaaaatattcatttata 13580384  T
Q  210 ttcaaagtt 218  Q
      |||||||    
T  13580385 accaaagtt 13580393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 4350581 - 4350691
Alignment:
Q  99 agggttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaat 198  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||| |||| | ||||||||||||  |||| |||| ||||| |||||||||||| |||||    
T  4350581 agggctggtcctaggatttttcgtgtcctggacgaaacaataaa-ttgtacccttttaattattttaatattttttttcttgcattttttgttgaaaaat 4350679  T
Q  199 attcatttatat 210  Q
    |||| |||||||    
T  4350680 attcgtttatat 4350691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 13236379 - 13236276
Alignment:
Q  115 tttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaa 214  Q
    ||||| ||| |||| | |||||||||||||| |||  ||||||||||||||||| |||||||||| |||| |||||||||||| |||| |||||| ||||    
T  13236379 tttttggtgccctggatgaaacaataaaattatgccattttaattattccaatatttttcttcttgcattatttgttgcaaaaaattcgtttataatcaa 13236280  T
Q  215 agtt 218  Q
    ||||    
T  13236279 agtt 13236276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 43872679 - 43872601
Alignment:
Q  140 aaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||||||| | ||||||||||||| |||| ||||||| ||  ||||||||||||| || ||||||||||| ||||||||    
T  43872679 aaaattgtacccttttaattattctaatatttttctttttgtattttttgttgcacaagattcatttataatcaaagtt 43872601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 24606912 - 24606874
Alignment:
Q  171 tttcttcttacattttttgttgcaaaatattcatttata 209  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  24606912 tttcttcttacattttttgctgcaaaagattcatttata 24606874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 34142257 - 34142149
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    |||||||||||||||  ||  ||| ||||||||||||| |||| | ||||||||||||  |||  |||| ||| | ||||||||||||  ||||||||||    
T  34142257 ggtcctaagatttttgatgctctggacgaaacaataaa-ttgtacccttttaattattttaattttttt-ttcgtgcattttttgttgataaatattcat 34142160  T
Q  205 ttatattcaaa 215  Q
    ||||| |||||    
T  34142159 ttataatcaaa 34142149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 12181997 - 12181916
Alignment:
Q  136 caataaaattgtgctcttt-taattattccaatagttttctt-cttacattttttgttgcaaaatattcatttatattcaaa 215  Q
    ||||||||||||| ||||| |||||||||||||  |||| || |||  | |||||||||||||||||||||| ||| |||||    
T  12181997 caataaaattgtgttctttataattattccaatgtttttttttcttgtactttttgttgcaaaatattcattcataatcaaa 12181916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 12426425 - 12426344
Alignment:
Q  136 caataaaattgtgctcttt-taattattccaatagttttctt-cttacattttttgttgcaaaatattcatttatattcaaa 215  Q
    ||||||||||||| ||||| |||||||||||||  |||| || |||  | |||||||||||||||||||||| ||| |||||    
T  12426425 caataaaattgtgttctttataattattccaatgtttttttttcttgtactttttgttgcaaaatattcattcataatcaaa 12426344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 12178010 - 12177910
Alignment:
Q  106 gtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatt 205  Q
    ||||||||| |||| ||| |||| ||||||   ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||||     
T  12178010 gtcctaagagttttggtgccctggacgaaa---taaaattgtgccctattaattattctaatagttttcttcttacattttttgttgcaaaagattcatc 12177914  T
Q  206 tata 209  Q
    ||||    
T  12177913 tata 12177910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 3351283 - 3351174
Alignment:
Q  108 cctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattta 207  Q
    |||||||||||| ||  ||||||| |||||||||| ||||   ||||||||||||  |||| |||||||||| |||||||||||| ||||||||||||||    
T  3351283 cctaagatttttggtaccctgaacaaaacaataaa-ttgtttccttttaattattaaaatatttttcttcttgcattttttgttgtaaaatattcattta 3351185  T
Q  208 tattcaaagtt 218  Q
    || ||||||||    
T  3351184 taatcaaagtt 3351174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 22318618 - 22318700
Alignment:
Q  137 aataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagttt 219  Q
    ||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| ||| ||||||| | |||||||    
T  22318618 aataaaattgtgcccttttagttatttcaatagtttttttcttacattttttgttgcaaaagatttatttataattaaagttt 22318700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 35812774 - 35812709
Alignment:
Q  153 tttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  35812774 tttaattattccaatattattcttcttgcattttttgttgcaaaatattcatttataatcaaagtt 35812709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 26914291 - 26914369
Alignment:
Q  130 acgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttata 209  Q
    ||||||||||||||| |||  ||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||    
T  26914291 acgaaacaataaaat-gtgtccttttaattattttaatatttttcttcttgcattttttgttgcaaaatattcatttata 26914369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 15133276 - 15133342
Alignment:
Q  152 ttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    |||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  15133276 ttttaattattcaaatattttttttcttacattttttgttgtaaaatattcatttataatcaaagtt 15133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 42335892 - 42335981
Alignment:
Q  130 acgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagttt 219  Q
    |||||| ||||||||| ||   ||||||| |||  ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||    
T  42335892 acgaaataataaaattatgtctttttaatcattttaatagtttttttcttacattttttgttgcaaaagattcatttataatcaaagttt 42335981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 21828367 - 21828254
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaa-cgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattca 203  Q
    ||||||||||||||| ||| |||||  ||||| || |||||||| | ||||||||||||| |||| ||||| ||||  ||||||||||||| || |||||    
T  21828367 ggtcctaagatttttggtg-cctgaggcgaaagaaaaaaattgtacccttttaattattctaatatttttcgtcttttattttttgttgcacaagattca 21828269  T
Q  204 tttatattcaaagtt 218  Q
    |||||| ||||||||    
T  21828268 tttataatcaaagtt 21828254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 40351695 - 40351802
Alignment:
Q  109 ctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttat 208  Q
    ||||||||||| ||||| || |||||||||||||||| | | ||||||||||||| |||  |||| ||||| ||||||||||||  ||| ||| ||||||    
T  40351695 ctaagatttttggtgtcttggacgaaacaataaaattcttcccttttaattattctaat--tttttttcttgcattttttgttgataaagatttatttat 40351792  T
Q  209 attcaaagtt 218  Q
    | ||||||||    
T  40351793 aatcaaagtt 40351802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 31799747 - 31799689
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattc 163  Q
    ||||||||||||||| |||||||  |||||||||||||||| |||||| ||||||||||    
T  31799747 ggtcctaagatttttcgtgtcctagacgaaacaataaaattttgctctcttaattattc 31799689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 26448533 - 26448466
Alignment:
Q  152 ttttaattattccaa-tagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||||| ||| || |||| ||||| ||||||||||||||||| ||||||||||  ||||||||    
T  26448533 ttttaattatttcaaatattttttttcttgcattttttgttgcaaaagattcatttattatcaaagtt 26448466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 48393197 - 48393312
Alignment:
Q  99 agggttggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaat 198  Q
    |||||||||| ||| |||||| ||||||| |  |||  |||||| ||||| |||||||||||||  |||   |||||||||| |||||||||||  |||     
T  48393197 agggttggtcttaatattttttgtgtcctaagagaattaataaagttgtg-tcttttaattatttaaatgtctttcttcttatattttttgttgtgaaag 48393295  T
Q  199 attcatttatattcaaa 215  Q
    ||| ||||||| |||||    
T  48393296 atttatttataatcaaa 48393312  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 11365208 - 11365141
Alignment:
Q  151 cttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  11365208 cttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttataatcaaagtt 11365141  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 47000793 - 47000898
Alignment:
Q  109 ctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttat 208  Q
    ||||||||||| ||||| || || |||| ||||| |||||| |||||||| |||  |||| ||||||||||| |||||||||||||||||||||||||||    
T  47000793 ctaagatttttggtgtcatggacaaaactataaa-ttgtgcccttttaatcatttaaatatttttcttcttatattttttgttgcaaaatattcatttat 47000891  T
Q  209 attcaaa 215  Q
    | |||||    
T  47000892 aatcaaa 47000898  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 27538709 - 27538820
Alignment:
Q  105 ggtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 204  Q
    ||||||||||||||| ||||| || | ||||||||||| |||| |  |||||| |||| ||||| |||| |||||  |||||||||||||||||||||||    
T  27538709 ggtcctaagatttttggtgtcttggatgaaacaataaa-ttgtaccattttaactatttcaatattttt-ttcttgtattttttgttgcaaaatattcat 27538806  T
Q  205 ttatattcaaagtt 218  Q
    || || ||||||||    
T  27538807 ttctaatcaaagtt 27538820  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 11383791 - 11383687
Alignment:
Q  110 taagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttata 209  Q
    |||||||||| ||| |||| ||||||| ||||| |||| | ||||||||||||  |||| |||| ||    |||||||||||||||||||||||||||||    
T  11383791 taagatttttggtgccctggacgaaactataaa-ttgtacccttttaattatttaaatatttttattg---cattttttgttgcaaaatattcatttata 11383696  T
Q  210 ttcaaagtt 218  Q
     ||||||||    
T  11383695 atcaaagtt 11383687  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 52704590 - 52704684
Alignment:
Q  122 tgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaag 216  Q
    |||| ||| ||||| || |||||||||| ||||||||||||| |||| ||||| | ||  ||||||||||||| || ||||||||||| ||||||    
T  52704590 tgtcatgagcgaaagaaaaaaattgtgcccttttaattattctaatatttttcattttgtattttttgttgcacaagattcatttataatcaaag 52704684  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 19149782 - 19149887
Alignment:
Q  110 taagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaata-gttttcttcttacattttttgttgcaaaatattcatttat 208  Q
    ||||||||||||| ||| | ||||||||| ||||||  || ||||||||||||||||||  |||| ||||| |||||||| ||| |||| ||| ||||||    
T  19149782 taagatttttagtatccaggacgaaacaacaaaattacgcccttttaattattccaatatttttttttcttgcattttttattgtaaaagatttatttat 19149881  T
Q  209 attcaa 214  Q
    | ||||    
T  19149882 aatcaa 19149887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 33290908 - 33290792
Alignment:
Q  103 ttggtcctaagattttta-gtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatatt 201  Q
    |||||||||||||||||  |||  ||| ||||||||||||| || ||   ||||||||||| ||||| |||||| ||| | |||||||||||| || |||    
T  33290908 ttggtcctaagatttttttgtgctctggacgaaacaataaagttatgtctttttaattatttcaatatttttctccttgcgttttttgttgcacaagatt 33290809  T
Q  202 catttatattcaaagtt 218  Q
    |||||||  ||||||||    
T  33290808 catttatgatcaaagtt 33290792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 42418038 - 42417975
Alignment:
Q  152 ttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaa 215  Q
    ||||||| ||||||||| |||| || |||||||||||||| ||||||||| ||||||| |||||    
T  42418038 ttttaatcattccaatatttttgttattacattttttgttacaaaatatttatttataatcaaa 42417975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 33510019 - 33510132
Alignment:
Q  106 gtcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagt-tttcttcttacattttttgttgcaaaatattcat 204  Q
    |||||||||||||| |||||| |  |||||||||||||||||||  |||||||||||  |||  |  || || ||  |||||||||||||||| ||||||    
T  33510019 gtcctaagatttttggtgtccagggcgaaacaataaaattgtgccattttaattattttaattttaattttttttgaattttttgttgcaaaagattcat 33510118  T
Q  205 ttatattcaaagtt 218  Q
    ||||| | ||||||    
T  33510119 ttataattaaagtt 33510132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 24252087 - 24252032
Alignment:
Q  107 tcctaagatttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattc 163  Q
    |||||||| | || |||||||| ||||| |||||||||||||| |||||||||||||    
T  24252087 tcctaagactattggtgtcctggacgaatcaataaaattgtgc-cttttaattattc 24252032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 525 - 422
Alignment:
Q  114 atttttagtgtcctgaacgaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattca 213  Q
    |||||| |||||||| ||||||| ||||| |||||| | ||||||||||| |||| |||||||||| |||||||| ||| |||||||| ||||||| |||    
T  525 atttttggtgtcctggacgaaactataaa-ttgtgcccctttaattattcaaatatttttcttcttgcattttttattgtaaaatattaatttataatca 427  T
Q  214 aagtt 218  Q
    |||||    
T  426 aagtt 422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 1824 - 1739
Alignment:
Q  133 aaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||| ||||||||   ||||||||||| ||||| |||||||||| |||||||| |||||||| ||| ||||||| ||||||||    
T  1824 aaacaattaaattgtgtctttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagtt 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 9887 - 9802
Alignment:
Q  133 aaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcatttatattcaaagtt 218  Q
    ||||||| ||||||||   ||||||||||| ||||| |||||||||| |||||||| |||||||| ||| ||||||| ||||||||    
T  9887 aaacaattaaattgtgtctttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagtt 9802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 9878 - 9794
Alignment:
Q  137 aataaaattgtgctctttt-aattattccaat-agtttt-cttcttacattttttgttgcaaaatattcatttatattcaaagttt 219  Q
    ||||||||||||| ||||| |||||||||||| |||||| ||| ||| ||||||||||| ||||  |||||||||| |||||||||    
T  9878 aataaaattgtgccctttttaattattccaattagtttttctttttatattttttgttgtaaaa-cttcatttataatcaaagttt 9794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 4491 - 4447
Alignment:
Q  129 aacgaaacaataaaattgtgctcttttaattattccaatagtttt 173  Q
    ||||||||||||||||||||  |||||||||||| ||||| ||||    
T  4491 aacgaaacaataaaattgtgtccttttaattatttcaatattttt 4447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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