View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_low_13 (Length: 342)

Name: NF7807_low_13
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_low_13
NF7807_low_13
[»] chr5 (29 HSPs)
chr5 (139-334)||(32076417-32076612)
chr5 (139-317)||(29230960-29231136)
chr5 (143-334)||(3387327-3387517)
chr5 (139-316)||(39935676-39935853)
chr5 (141-307)||(19099933-19100097)
chr5 (181-316)||(26565020-26565155)
chr5 (149-316)||(31113888-31114056)
chr5 (181-311)||(34764588-34764716)
chr5 (181-316)||(2627881-2628020)
chr5 (181-312)||(8229360-8229489)
chr5 (186-316)||(16756004-16756134)
chr5 (1-66)||(32076270-32076336)
chr5 (177-316)||(5836574-5836708)
chr5 (183-316)||(41368670-41368806)
chr5 (181-311)||(34510912-34511039)
chr5 (140-207)||(31210733-31210802)
chr5 (235-316)||(13407237-13407318)
chr5 (181-314)||(29674927-29675060)
chr5 (266-316)||(27925624-27925674)
chr5 (1-66)||(29230817-29230881)
chr5 (192-311)||(7057170-7057287)
chr5 (151-221)||(8802709-8802779)
chr5 (1-66)||(39935936-39935999)
chr5 (192-229)||(27925692-27925729)
chr5 (25-66)||(31113757-31113798)
chr5 (1-54)||(34764537-34764591)
chr5 (1-54)||(2627832-2627884)
chr5 (1-54)||(8229486-8229538)
chr5 (1-66)||(19099787-19099851)
[»] chr2 (36 HSPs)
chr2 (141-334)||(30485638-30485831)
chr2 (139-332)||(30382690-30382883)
chr2 (139-317)||(42794656-42794832)
chr2 (139-316)||(41323954-41324128)
chr2 (181-316)||(40498686-40498821)
chr2 (188-316)||(7017900-7018028)
chr2 (192-316)||(36467272-36467396)
chr2 (148-316)||(17328772-17328944)
chr2 (150-316)||(37272802-37272967)
chr2 (139-229)||(35306240-35306329)
chr2 (139-230)||(38140886-38140984)
chr2 (202-316)||(38221559-38221671)
chr2 (204-316)||(11562673-11562781)
chr2 (1-66)||(7018144-7018208)
chr2 (183-316)||(16496719-16496852)
chr2 (1-66)||(38595808-38595872)
chr2 (1-66)||(44364742-44364804)
chr2 (151-228)||(40083089-40083166)
chr2 (25-66)||(40083266-40083307)
chr2 (182-334)||(44364317-44364465)
chr2 (177-256)||(11457939-11458016)
chr2 (245-316)||(38558635-38558705)
chr2 (178-228)||(12599175-12599225)
chr2 (1-66)||(17329037-17329101)
chr2 (1-66)||(30382548-30382612)
chr2 (25-66)||(35306410-35306451)
chr2 (1-54)||(40364006-40364058)
chr2 (1-54)||(40498818-40498870)
chr2 (25-66)||(42794537-42794578)
chr2 (262-334)||(35298483-35298555)
chr2 (27-63)||(35429175-35429211)
chr2 (6-66)||(41324214-41324273)
chr2 (25-66)||(11562032-11562073)
chr2 (25-66)||(37272672-37272713)
chr2 (181-230)||(40363961-40364009)
chr2 (141-190)||(44364609-44364658)
[»] chr8 (27 HSPs)
chr8 (139-317)||(11789256-11789432)
chr8 (139-316)||(18928441-18928619)
chr8 (139-316)||(25430087-25430264)
chr8 (139-316)||(24888649-24888826)
chr8 (181-307)||(17748796-17748922)
chr8 (139-308)||(24728440-24728609)
chr8 (181-316)||(32856084-32856217)
chr8 (140-316)||(6166499-6166673)
chr8 (182-317)||(9409994-9410127)
chr8 (151-327)||(11990799-11990973)
chr8 (139-228)||(31332514-31332603)
chr8 (197-316)||(23877331-23877450)
chr8 (235-316)||(11755682-11755763)
chr8 (1-66)||(13003565-13003629)
chr8 (151-220)||(31431280-31431349)
chr8 (1-66)||(9410187-9410251)
chr8 (25-66)||(11755476-11755517)
chr8 (1-66)||(24728286-24728350)
chr8 (181-215)||(23877286-23877320)
chr8 (151-220)||(12006858-12006927)
chr8 (1-62)||(31431065-31431125)
chr8 (258-316)||(12006778-12006836)
chr8 (246-316)||(18320774-18320844)
chr8 (25-54)||(17748770-17748799)
chr8 (1-66)||(26079581-26079645)
chr8 (5-54)||(32856214-32856262)
chr8 (280-316)||(13003426-13003462)
[»] chr7 (29 HSPs)
chr7 (139-316)||(47843652-47843824)
chr7 (140-317)||(42040340-42040515)
chr7 (140-316)||(45648107-45648281)
chr7 (140-314)||(25310891-25311060)
chr7 (139-316)||(3751376-3751553)
chr7 (186-316)||(40836453-40836583)
chr7 (181-316)||(48153096-48153229)
chr7 (181-316)||(43495674-43495811)
chr7 (139-226)||(42509323-42509410)
chr7 (139-316)||(45492227-45492412)
chr7 (140-265)||(2185630-2185757)
chr7 (156-316)||(25482505-25482661)
chr7 (186-307)||(45804918-45805037)
chr7 (139-204)||(43728101-43728166)
chr7 (21-66)||(2185500-2185545)
chr7 (1-50)||(40837273-40837322)
chr7 (178-314)||(22201167-22201304)
chr7 (178-314)||(22236517-22236654)
chr7 (202-316)||(7857951-7858065)
chr7 (25-66)||(22542698-22542739)
chr7 (1-66)||(47843506-47843570)
chr7 (1-66)||(42040197-42040260)
chr7 (1-54)||(25310750-25310802)
chr7 (25-66)||(45492491-45492532)
chr7 (25-66)||(3751258-3751299)
chr7 (192-233)||(34471894-34471935)
chr7 (1-54)||(43495625-43495677)
chr7 (1-66)||(43728245-43728309)
chr7 (284-316)||(2185763-2185795)
[»] chr1 (27 HSPs)
chr1 (141-316)||(4966749-4966923)
chr1 (139-317)||(17116314-17116490)
chr1 (139-316)||(25294518-25294693)
chr1 (139-316)||(38682798-38682979)
chr1 (141-316)||(4972959-4973137)
chr1 (143-274)||(40032740-40032871)
chr1 (162-317)||(50726716-50726869)
chr1 (181-316)||(13558547-13558682)
chr1 (139-315)||(14287085-14287262)
chr1 (139-317)||(41827739-41827914)
chr1 (140-230)||(13643921-13644011)
chr1 (181-316)||(11767567-11767703)
chr1 (139-317)||(31513509-31513676)
chr1 (151-313)||(51898828-51898989)
chr1 (190-317)||(40693995-40694120)
chr1 (178-316)||(270997-271135)
chr1 (25-66)||(14287342-14287383)
chr1 (235-316)||(16122854-16122935)
chr1 (1-66)||(31513366-31513430)
chr1 (1-66)||(49899480-49899544)
chr1 (25-59)||(38682679-38682713)
chr1 (1-54)||(11767518-11767570)
chr1 (1-66)||(25294375-25294439)
chr1 (25-66)||(16123095-16123135)
chr1 (25-66)||(40694169-40694210)
chr1 (1-66)||(41827992-41828056)
chr1 (2-66)||(10443752-10443815)
[»] chr4 (33 HSPs)
chr4 (139-317)||(2295438-2295614)
chr4 (139-314)||(19721589-19721762)
chr4 (139-316)||(53018447-53018622)
chr4 (140-316)||(35103397-35103571)
chr4 (139-316)||(27675505-27675684)
chr4 (139-316)||(7208404-7208580)
chr4 (181-316)||(1052369-1052505)
chr4 (148-274)||(2242773-2242899)
chr4 (139-316)||(15476628-15476803)
chr4 (181-316)||(6008270-6008403)
chr4 (139-316)||(40217624-40217803)
chr4 (174-316)||(44987331-44987471)
chr4 (140-316)||(45774074-45774245)
chr4 (192-316)||(24917590-24917714)
chr4 (177-337)||(4775835-4775994)
chr4 (199-316)||(53586466-53586583)
chr4 (179-330)||(35823518-35823659)
chr4 (139-206)||(47922890-47922957)
chr4 (174-277)||(25059454-25059558)
chr4 (1-59)||(22588329-22588386)
chr4 (1-59)||(40217889-40217946)
chr4 (267-316)||(10037872-10037921)
chr4 (25-66)||(28101768-28101809)
chr4 (5-65)||(7208266-7208325)
chr4 (25-66)||(10037711-10037752)
chr4 (1-66)||(19721446-19721510)
chr4 (25-66)||(25059147-25059188)
chr4 (1-66)||(53018309-53018373)
chr4 (1-59)||(27675775-27675832)
chr4 (1-66)||(2242621-2242685)
chr4 (25-66)||(2295692-2295733)
chr4 (1-54)||(6008400-6008452)
chr4 (25-66)||(47922766-47922807)
[»] chr6 (21 HSPs)
chr6 (139-317)||(2032237-2032415)
chr6 (139-316)||(687965-688137)
chr6 (142-316)||(32340162-32340334)
chr6 (151-310)||(12283614-12283773)
chr6 (181-316)||(2988051-2988186)
chr6 (151-316)||(12311919-12312081)
chr6 (151-316)||(8486006-8486171)
chr6 (139-230)||(22297252-22297343)
chr6 (181-316)||(7434884-7435019)
chr6 (179-316)||(10229510-10229647)
chr6 (192-316)||(30928378-30928500)
chr6 (244-311)||(10567349-10567416)
chr6 (1-66)||(22054357-22054419)
chr6 (182-334)||(22053932-22054080)
chr6 (1-66)||(30928568-30928632)
chr6 (25-63)||(22297127-22297165)
chr6 (1-54)||(2988002-2988054)
chr6 (1-54)||(7435016-7435068)
chr6 (1-66)||(2032090-2032154)
chr6 (172-205)||(6108377-6108410)
chr6 (141-190)||(22054224-22054273)
[»] scaffold0565 (2 HSPs)
scaffold0565 (142-317)||(7967-8140)
scaffold0565 (25-66)||(8221-8262)
[»] chr3 (24 HSPs)
chr3 (141-316)||(29324146-29324322)
chr3 (181-316)||(45472664-45472797)
chr3 (139-317)||(7629079-7629255)
chr3 (139-316)||(40614886-40615058)
chr3 (181-316)||(36504885-36505020)
chr3 (139-316)||(46979235-46979410)
chr3 (181-316)||(38489651-38489784)
chr3 (139-267)||(51240858-51240985)
chr3 (192-316)||(27163964-27164086)
chr3 (142-277)||(39614930-39615063)
chr3 (201-333)||(52695505-52695638)
chr3 (205-316)||(32835303-32835414)
chr3 (2-66)||(52695336-52695400)
chr3 (192-316)||(20178972-20179091)
chr3 (181-227)||(17063888-17063934)
chr3 (1-66)||(51240707-51240771)
chr3 (245-316)||(20619326-20619397)
chr3 (1-66)||(20369011-20369073)
chr3 (235-337)||(52204102-52204204)
chr3 (1-54)||(45472794-45472846)
chr3 (181-259)||(53530625-53530701)
chr3 (8-66)||(7628936-7628993)
chr3 (266-316)||(35296487-35296537)
chr3 (177-229)||(21853838-21853890)
[»] scaffold0495 (1 HSPs)
scaffold0495 (179-316)||(6225-6362)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-66)||(38308-38372)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 139 - 334
Target Start/End: Original strand, 32076417 - 32076612
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  32076417 ccatatcatattttcatatgttgggatatcgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaagtgaatcacttatctct 32076516  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttctact 334  Q
    | ||||||||||  |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||    
T  32076517 cgttaacttcattgacaagaagtataaatttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctact 32076612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 139 - 317
Target Start/End: Original strand, 29230960 - 29231136
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  | ||||    
T  29230960 ccatattacattttcatatgttgggatattgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcac--atctct 29231057  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    |  ||  |||||||||||||||||||| |||||||| ||  |||||||||||||||| |||||||||||||||||||||    
T  29231058 cgctacattcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgag 29231136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 143 - 334
Target Start/End: Complemental strand, 3387517 - 3387327
Alignment:
Q  143 attatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcatt 242  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||  |||    
T  3387517 attatattttcatatgttgggatatcgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaagtgaatcacatatctc-gatt 3387419  T
Q  243 aacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttctact 334  Q
    ||||||||  |||||||||||||||||||||||||  | |||||||||||||| |||||||||  |||||||||  ||||||| | ||||||    
T  3387418 aacttcatatacaagaagtataaatttaagtggttcattgagaaacaattctaatgatgcataaataaaattgaaatatacacgtctctact 3387327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 39935853 - 39935676
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |  |||     
T  39935853 ccatattatattttcatatgttggaatattgagagaaacatcattaaaagaacacaacacaaattttatctgatgttgattaattggatcacatctctca 39935754  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     |||| |||||||||| | ||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||    
T  39935753 gattaccttcatccactaaaagtataaatttaagtggtttatcgagaaacaactctaatgatgtatatctaaaattga 39935676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 141 - 307
Target Start/End: Original strand, 19099933 - 19100097
Alignment:
Q  141 atattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctca 240  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | |||||     
T  19099933 atattacattttcatatgttgggatatcgaaagaaacatcattaaaaaaactcaacacaaattttatctaatgttgattaactgaatcac--atctctcg 19100030  T
Q  241 ttaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatc 307  Q
    |||  |||||||||||||||||||| |||| ||| ||  ||||||||||||| || |||||||||||    
T  19100031 ttacgttcatccacaagaagtataattttaggtgtttcatcgagaaacaattatattgatgcatatc 19100097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 26565155 - 26565020
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| ||| |||||||||| | |||||||| |||||||||||| |    
T  26565155 attaaaagaactcaacataaattttatctaatattgattaactgaatcacctccctctccttaccttcatccacgataagtataattttaagtggtttat 26565056  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    | |||||||||| || |||| |||||||||||||||    
T  26565055 caagaaacaattatagtgatacatatctaaaattga 26565020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 316
Target Start/End: Original strand, 31113888 - 31114056
Alignment:
Q  149 ttttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaac-tt 247  Q
    |||| ||||||| |||||| || ||||  || |||||||||| |||| |||||||||||||||||||||||||| ||||||| |  ||||| ||| | ||    
T  31113888 tttttatatgtttggatatcgagagaagaataattaaaagaagtcaaaacaaattttatctaatgttgattaaccgaatcacctctctctcgttaccctt 31113987  T
Q  248 catccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||||||||| |||||||||||   || ||||||||| |||| ||||||||||||||||||    
T  31113988 catccacaagaagtataattttaagtggttcaccgtgaaacaattttactaatgcatatctaaaattga 31114056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 34764588 - 34764716
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| |  ||||||||| ||| |||||||||| || ||| |||||||||||  |    
T  34764588 attaaaagaactcaacacaaattttatttaatgttgattaattgaatcacct--ctctcattacctttatccacaagacgtgtaattttaagtggttcat 34764685  T
Q  281 cgagaaacaattctactgatgcatatctaaa 311  Q
    ||| ||||| ||||| |||||||||||||||    
T  34764686 cgaaaaacagttctagtgatgcatatctaaa 34764716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 2627881 - 2628020
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcactt----acctctcattaacttcatccacaagaagtataaatttaagtggt 276  Q
    ||||||| ||||||||||||||||||| ||||||||||||| |||||||| |    | ||||| ||| |||||||||||  |||||||| ||||||||||    
T  2627881 attaaaataactcaacacaaattttatttaatgttgattaattgaatcacctctctatctctctttaccttcatccacagaaagtataattttaagtggt 2627980  T
Q  277 ttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |  |||| ||||||||||| | ||||||||||||||||||    
T  2627981 tcatcgataaacaattctaattatgcatatctaaaattga 2628020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 8229489 - 8229360
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||| |  ||| ||||| |||  ||||| |||||||| | |||||||| ||  |    
T  8229489 attaaaaaaactcaacacaaattttatctaatgttgattaaccgaatcacct--ctcgcattacctttgtccacgagaagtatgattttaagtgattcat 8229392  T
Q  281 cgagaaacaattctactgatgcatatctaaaa 312  Q
     |||||||||||||| ||||||||||||||||    
T  8229391 tgagaaacaattctagtgatgcatatctaaaa 8229360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 16756004 - 16756134
Alignment:
Q  186 aagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgaga 285  Q
    ||||||| ||||||||| |  ||||||||||||||| |||||| |||  ||||  ||| ||||||||||||||| ||||| ||||||||||   |||| |    
T  16756004 aagaacttaacacaaatctagtctaatgttgattaattgaatctcttctctcttgttaccttcatccacaagaattataattttaagtggtcaatcgata 16756103  T
Q  286 aacaattctactgatgcatatctaaaattga 316  Q
    ||||||| |||| ||||||||||||||||||    
T  16756104 aacaattttactaatgcatatctaaaattga 16756134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32076270 - 32076336
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaat-acttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32076270 tatactaaaactcatatgtgtgtaaaaaagacttgaagaaaataaacattgattactctttattatt 32076336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 5836708 - 5836574
Alignment:
Q  177 catcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggt 276  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||| | |  ||||| ||| ||| || |   |  ||||||| ||||||||||    
T  5836708 catcattaaaagaactcaacacaaattttatctaatggtgattaattgaatctcct--ctctcgttacctttatac---attagtataattttaagtggt 5836614  T
Q  277 ttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |  ||||||||||||| ||| ||| ||||| |||||||||    
T  5836613 tcatcgagaaacaattataccgatacatatataaaattga 5836574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 41368806 - 41368670
Alignment:
Q  183 taaaagaactcaacacaaattttatctaatgttgattaactgaatcactt---acctctcattaacttcatccacaagaagtataaatttaagtggtttg 279  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||| |||   | |||||||||  ||||  ||||| |||||||| ||| |||||||      
T  41368806 taaaagaactcaacttaaattttatttaatgttgattaactgaatctcttttaatctctcattactttcactcacaaaaagtataatttttagtggttca 41368707  T
Q  280 tcgagaaacaattctactgatgcatatctaaaattga 316  Q
    || ||||||| ||  || |||||||||||||||||||    
T  41368706 tcaagaaacatttacaccgatgcatatctaaaattga 41368670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 34511039 - 34510912
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||| |||||||| |||||| ||||| ||||||||||||| |||||| |  || ||||||  |||||||| ||||||||||| |||||||||||  |    
T  34511039 attaaaataactcaactcaaattctatctcatgttgattaact-aatcacct--ctttcattactttcatccataagaagtataattttaagtggttcat 34510943  T
Q  281 cgagaaacaattctactgatgcatatctaaa 311  Q
    ||| |||||||  || | |||||||||||||    
T  34510942 cgaaaaacaatgttagttatgcatatctaaa 34510912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 31210733 - 31210802
Alignment:
Q  140 catattatattttcatatgttgggatatt--gaaagaaacatcattaaaagaactcaacacaaattttat 207  Q
    ||||||||| ||||||||||||||||||   || |||||||||||||||||||| |||||||||||||||    
T  31210733 catattatactttcatatgttgggatataccgagagaaacatcattaaaagaacacaacacaaattttat 31210802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 13407237 - 13407318
Alignment:
Q  235 ctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||| || ||| || ||||||||||| ||||| |||||  ||||||||||||| |||||||| ||||||||||||||    
T  13407237 ctctcattagctccattcataagaagtataattttaactggttcatcgagaaacaattatactgatgtatatctaaaattga 13407318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 29675060 - 29674927
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    |||||||||  |||||||||||||||| |||  ||| |||| |||||||| |  ||  ||||| ||||||| | ||||||||||| |||||||||||  |    
T  29675060 attaaaagatatcaacacaaattttatttaagattggttaattgaatcacctctcttgcattatcttcatctataagaagtataattttaagtggttcat 29674961  T
Q  281 cgagaaacaattctactgatgcatatctaaaatt 314  Q
    ||  ||| ||||||||| || |||||||||||||    
T  29674960 cgtaaaataattctactaatacatatctaaaatt 29674927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 27925674 - 27925624
Alignment:
Q  266 atttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  27925674 atttaagtggttcatcgagaaacaattctactgatgaatatctaaaattga 27925624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29230817 - 29230881
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  29230817 tataataaaacttatatgtatgtaaaa-tacttgaagaaaattaacattgattactcttcattatt 29230881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 7057287 - 7057170
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaat 291  Q
    ||||||||||||||||| |||||||||||| |||||||| ||  | || ||| ||||||| |  |||| ||||| ||||||| |||  |||||| |||||    
T  7057287 tcaacacaaattttatccaatgttgattaattgaatcacgta--tttcgttaccttcatctattagaaatataattttaagttgttcatcgagacacaat 7057190  T
Q  292 tctactgatgcatatctaaa 311  Q
    | ||||||| ||||| ||||    
T  7057189 tatactgatccatatgtaaa 7057170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 8802709 - 8802779
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaa 221  Q
    |||||||||| ||||||  | |||| |||||| |||||||||||||||||||||| | |||| ||||||||    
T  8802709 ttcatatgttaggatatcaatagaagcatcatcaaaagaactcaacacaaattttgtttaatattgattaa 8802779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39935999 - 39935936
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||| ||| |||||  ||||||| |||||||||||||||||||  |||||||    
T  39935999 tatactaaaactcatatgagtgaaaaaa--cttgaaggaaataaacattgattactccctattatt 39935936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 27925729 - 27925692
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatca 229  Q
    |||||||||||||||||||||||||||||| |||||||    
T  27925729 tcaacacaaattttatctaatgttgattaattgaatca 27925692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 31113757 - 31113798
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  31113757 aaaatacttgaagaaaataaacatcgattactcttcattatt 31113798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34764537 - 34764591
Alignment:
Q  1 tatactaaaactcatatgtgtgta-aaaatacttgaagaaaataaacattgatta 54  Q
    |||||||||||| |||| | |||  ||||||||||||||||||||||||||||||    
T  34764537 tatactaaaacttatatatatgtgtaaaatacttgaagaaaataaacattgatta 34764591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2627832 - 2627884
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||||||||||| |||||| ||||||| ||||| ||||||||||||||| ||||    
T  2627832 tatactaaaacttatatgtatgtaaaa-tacttcaagaaaataaacattaatta 2627884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8229538 - 8229486
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  8229538 tatattaaaacttatatgtatgtaaaa-tacttgaagaaaataaacattaatta 8229486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19099787 - 19099851
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| ||||  |||||||||| ||||||    
T  19099787 tatagtaaaacttatatgtatgtaaaa-tacttgaagaaaattaacaccgattactcttcattatt 19099851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 141 - 334
Target Start/End: Complemental strand, 30485831 - 30485638
Alignment:
Q  141 atattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctca 240  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |  ||||||    
T  30485831 atattatattttcatatgttgggatatagaaagaaacatcattaaaagaactcaacacaaactttatctaatgttgattaattgaatcacctttctctca 30485732  T
Q  241 ttaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttctact 334  Q
    ||| |||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||| | | |||||| ||||||    
T  30485731 ttaccttcatccacaagaagtataaatttaagtggttcaccgagaaacaattctaatgatgcatatctaaaattgaaccacacacatctctact 30485638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 139 - 332
Target Start/End: Original strand, 30382690 - 30382883
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |  ||||    
T  30382690 ccatattatattttcatatgttgggatatcgagagaaacatcattaaaagaattcaatacaaattttatctaatgttgattaactgaatcacatctctct 30382789  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttcta 332  Q
    |||||  ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| |||||||||| ||| | |||||||| ||||    
T  30382790 cattacattcatccacaagaagtataaatttaagtggttcatcgagaaacaattctaatgatgtatatctaaaagtgaacaatacacatctcta 30382883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 139 - 317
Target Start/End: Original strand, 42794656 - 42794832
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||  |||    
T  42794656 ccatattacattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactaaatca--tatttct 42794753  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    |  ||  ||||||||||| |||||||| |||||||| ||  |||||||||||||||| |||||||||||||||||||||    
T  42794754 cgctacgttcatccacaataagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgag 42794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 41324128 - 41323954
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||||||| ||||||||||| || ||||||||||| |  ||||    
T  41324128 ccatattatattttcatatgttgggatatcgagagaagtatcattaaaagaactcaacacaaattgtatctaatgtt-ataaactgaatcacct--ctct 41324032  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    | ||| ||||||||||||||||||||| |||||| ||||  ||||||||||||| |||||||||||||||||||||||    
T  41324031 cgttaccttcatccacaagaagtataattttaagcggttcatcgagaaacaattttactgatgcatatctaaaattga 41323954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 40498821 - 40498686
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||| ||| ||||||||| ||||||||||| |||||||||||  |    
T  40498821 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcagctctctctcgttatcttcatccaaaagaagtataattttaagtggttcat 40498722  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||| ||||||||||||||||||||    
T  40498721 cgagaaacaattctagtgatgcatatctaaaattga 40498686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 7018028 - 7017900
Alignment:
Q  188 gaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaa 287  Q
    ||||||||||||||||||||||||||||||||||| |||| || |  ||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  7018028 gaactcaacacaaattttatctaatgttgattaaccgaattacctctctctcgttaccttcatccacaagaagtataattttaagtggtttatcgagaaa 7017929  T
Q  288 caattctactgatgcatatctaaaattga 316  Q
    |||||||||  ||||||||||||||||||    
T  7017928 caattctacccatgcatatctaaaattga 7017900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 36467396 - 36467272
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaat 291  Q
    ||||||||||||||||||| |||||||||| |||||||| |  ||||||||| |||||||||||||||  |||| |||||||||||  ||||||||||||    
T  36467396 tcaacacaaattttatctattgttgattaattgaatcacatctctctcattaccttcatccacaagaatcataattttaagtggttcatcgagaaacaat 36467297  T
Q  292 tctactgatgcatatctaaaattga 316  Q
    | |||| ||||||||||||||||||    
T  36467296 tttacttatgcatatctaaaattga 36467272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 316
Target Start/End: Complemental strand, 17328944 - 17328772
Alignment:
Q  148 attttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctc----tcatta 243  Q
    |||||||||| || |||||| || ||||  || ||||||||||||||||||||||||||| |||||||||||||||||||||  |  |||    || |||    
T  17328944 attttcatatctttggatatcgagagaagaataattaaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctctttcgtta 17328845  T
Q  244 acttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     ||||||||||||||||||||| |||||||||||   || |||||||||| ||| ||||||||||||||||||    
T  17328844 ccttcatccacaagaagtataactttaagtggttccccgtgaaacaattcgactaatgcatatctaaaattga 17328772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 316
Target Start/End: Original strand, 37272802 - 37272967
Alignment:
Q  150 tttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttca 249  Q
    |||||||||| ||||||| || | ||| |||||||||||||||||||| ||||||| |||||  ||||| |||| |||||| | |||||| ||| |||||    
T  37272802 tttcatatgtagggatatcgagaaaaatatcattaaaagaactcaacataaattttgtctaagattgat-aactaaatcacctccctctcgttaccttca 37272900  T
Q  250 tccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||| |||||||||| |||||||||||  |||| |||||||| || |||||||| |||||||||||    
T  37272901 tccacgagaagtataattttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattga 37272967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 35306329 - 35306240
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatca 229  Q
    ||||||||||||||||||||| ||||||| || ||||| ||| ||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  35306329 ccatattatattttcatatgtagggatatcgagagaaatatcgttaaa-gaactccacacaaattttatctaatgttgattaactaaatca 35306240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 38140984 - 38140886
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaa-------gaactcaacacaaattttatctaatgttgattaactgaatcac 230  Q
    |||||||| |||||||||||||||||||| || | ||| ||||||||||       |||||||||||||| ||||||||||||||||||||||||||||    
T  38140984 ccatattacattttcatatgttgggatatcgagaaaaatatcattaaaatttaaaagaactcaacacaaaatttatctaatgttgattaactgaatcac 38140886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 38221559 - 38221671
Alignment:
Q  202 ttttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatg 301  Q
    ||||||||||||||||| || |||||||| |  ||||| ||| |||  |||||||||||||||| |||||||| ||  || ||||||||||||| |||||    
T  38221559 ttttatctaatgttgatcaattgaatcacct--ctctcgttacctttgtccacaagaagtataattttaagtgattcatcaagaaacaattctagtgatg 38221656  T
Q  302 catatctaaaattga 316  Q
    |||||| ||||||||    
T  38221657 catatccaaaattga 38221671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 11562673 - 11562781
Alignment:
Q  204 ttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgca 303  Q
    ||||| |||||||||||| |||||||| |  ||||| |||  |||||| ||||||||||||| |||||||||||| ||||||||||||| |  |||| ||    
T  11562673 ttatccaatgttgattaattgaatcacct--ctctcgttattttcatctacaagaagtataattttaagtggtttatcgagaaacaattgt--tgattca 11562768  T
Q  304 tatctaaaattga 316  Q
    |||| ||||||||    
T  11562769 tatccaaaattga 11562781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7018208 - 7018144
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  7018208 tatactaaaacttacatgtatgtaaaa-tacttgaagaaaataaacattgattactcttcattatt 7018144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 16496719 - 16496852
Alignment:
Q  183 taaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcg 282  Q
    |||||||||  ||||||| |||| ||||||||||||||  |||||| | |  |||| |||   ||||||||||| || ||||  |||||||||||  |||    
T  16496719 taaaagaacagaacacaagttttgtctaatgttgattagttgaatctcatctctcttattgcattcatccacaaaaaatatacttttaagtggttcatcg 16496818  T
Q  283 agaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||| ||||||| || ||||||||||||    
T  16496819 agaaacaattttactgattcacatctaaaattga 16496852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38595808 - 38595872
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||||||    
T  38595808 tatactaaaactcatatgtgtgt-aaaatacttgaagataataagcatttattattctttattatt 38595872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44364804 - 44364742
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||| || ||   |||||||||||||||||||||||||| |||||||||||||||    
T  44364804 tatactaaaactcatgtgagt---aaaatacttgaagaaaataaacattggttactctttattatt 44364742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 40083166 - 40083089
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatc 228  Q
    |||| ||||| ||||||  | |||||||| ||||| |||||||||||||||||||  |||||||||||||| ||||||    
T  40083166 ttcaaatgttaggatatctacagaaacatgattaacagaactcaacacaaattttgcctaatgttgattaattgaatc 40083089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40083307 - 40083266
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  40083307 aaaatacttgaagaaaataaacattgattattctttattatt 40083266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 334
Target Start/End: Complemental strand, 44364465 - 44364317
Alignment:
Q  182 ttaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtc 281  Q
    ||||||||||||||||   |||| |||||| ||||||||| ||||| |  |  ||||||||| ||||||||| | |||||||||||||| ||||||  |     
T  44364465 ttaaaagaactcaacatgcatttcatctaaagttgattaattgaatgatct--ctctcattaccttcatccagaggaagtataaattta-gtggttcatt 44364369  T
Q  282 gagaaacaattctactgatgcatatctaaaattgagctatacacatttctact 334  Q
     ||||||||||| | |||||| ||||||||||||| |  ||||||| ||||||    
T  44364368 -agaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctact 44364317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 11458016 - 11457939
Alignment:
Q  177 catcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaa 256  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||| | |||  |||  ||||||||| ||||||||||||    
T  11458016 catcattaaaataacgcaacacaaattttgtctaatgttgattaattaaat--cttctctctcattaccttcatccacaa 11457939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 38558635 - 38558705
Alignment:
Q  245 cttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||||| ||| ||||||||| ||  |||||||||||| |||||||  ||||||||||||||    
T  38558635 cttcatccacaagaagtgtaattttaagtgg-ttcacgagaaacaattatactgatatatatctaaaattga 38558705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 12599225 - 12599175
Alignment:
Q  178 atcattaaaagaactcaacacaaattttatctaatgttgattaactgaatc 228  Q
    |||||||||||||| |||||||||| || ||||||||||||||| ||||||    
T  12599225 atcattaaaagaacacaacacaaatgttgtctaatgttgattaattgaatc 12599175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17329101 - 17329037
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| || ||| ||| ||| |||||||||||||||||||| ||||||| |||||||||    
T  17329101 tatactaaaacttatttgtatgtgaaa-tacttgaagaaaataaacatcgattactttttattatt 17329037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30382548 - 30382612
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| |||||||||||||||||| ||| ||| ||||||||||||  ||| ||||||||||||||||    
T  30382548 tatattaaaactcatatgtgtgt-aaattacatgaagaaaataagtattaattactctttattatt 30382612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 35306451 - 35306410
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  35306451 aaaatacttgaagaaaataaacattgattacttttcattatt 35306410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40364058 - 40364006
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||||||||||| ||||||  |||||| ||||||||||||||||||||||||||    
T  40364058 tatactaaaacttatatgtacgtaaaa-tacttgaagaaaataaacattgatta 40364006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40498870 - 40498818
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||| ||||||||    
T  40498870 tatactaaaacttatatgtatgtaaaa-tacttgaagaaaataaatattgatta 40498818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 42794537 - 42794578
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  42794537 aaaatacttgaagaaaattaacattgattactcttcattatt 42794578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 35298555 - 35298483
Alignment:
Q  262 ataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttctact 334  Q
    |||| |||||||||||  |||||||| ||||||| |||||||| |||||||||||  |||| |||| ||||||    
T  35298555 ataattttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctact 35298483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 35429211 - 35429175
Alignment:
Q  27 aatacttgaagaaaataaacattgattactctttatt 63  Q
    |||||||||||||||||| ||||||||||||||||||    
T  35429211 aatacttgaagaaaataagcattgattactctttatt 35429175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 41324273 - 41324214
Alignment:
Q  6 taaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||| |||||| ||||||| |||||||| |||||||||||||||||| ||| ||||||    
T  41324273 taaaacttatatgtatgtaaaa-tacttgaacaaaataaacattgattacccttcattatt 41324214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 11562032 - 11562073
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||||| |||||||||| ||| ||||||    
T  11562032 aaaatacttgaagaaaataagcattgattacccttcattatt 11562073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 37272672 - 37272713
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| ||||| |||||||||||||||| ||||||    
T  37272672 aaaatacttgaaaaaaatgaacattgattactcttcattatt 37272713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 40364009 - 40363961
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcac 230  Q
    ||||||||||||||||||| ||||||||||||  ||||||| ||||||||    
T  40364009 attaaaagaactcaacacacattttatctaat-atgattaattgaatcac 40363961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 44364658 - 44364609
Alignment:
Q  141 atattatattttcatatgttgggatattgaaagaaacatcattaaaagaa 190  Q
    ||||||| ||||||||||||||||||| || |  ||||||||||||||||    
T  44364658 atattatgttttcatatgttgggatatcgagaagaacatcattaaaagaa 44364609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 139 - 317
Target Start/End: Original strand, 11789256 - 11789432
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||    
T  11789256 ccatattacattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcac--atctct 11789353  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    |  ||  |||||||||||||||||||| |||||||| ||  |||||||||| ||||| |||||||||||||||||||||    
T  11789354 cgctatgttcatccacaagaagtataattttaagtgtttcatcgagaaacagttctattgatgcatatctaaaattgag 11789432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 18928441 - 18928619
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||  ||||| ||  ||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |  ||||    
T  18928441 ccatattatattttcatatgttcagatatcgagtgaagcataattaaaagaactcaacacaaattttatttaatattgattaactgaatcacatctctct 18928540  T
Q  239 cattaacttcat-ccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    | ||| |||||| |||||| || ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  18928541 cgttatcttcatcccacaaaaaatataattttaagtggttcatcgagaaacaattctactgatgcatatctaaaattga 18928619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 25430264 - 25430087
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||  | ||| || ||||  || ||||||||||||||||||| ||||||| ||||||||||||||||||||||    ||||    
T  25430264 ccatattatattttcatatgttttgttatcgagagaagaataattaaaagaactcaacacatattttatttaatgttgattaactgaatcacccctctct 25430165  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||| |||||| |||||||||||||| |||||||||||  ||| |||||||||||||| ||||||||||||||||||    
T  25430164 cattaccttcattcacaagaagtataattttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattga 25430087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 24888649 - 24888826
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||  | ||| || ||||  || ||||||||||||||||| | ||||||||||||||||||||||||||||||    ||||    
T  24888649 ccatattatattttcatatgttttgttatcgagagaagaataattaaaagaactcaacatatattttatctaatgttgattaactgaatcacccctctct 24888748  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||| |||||| |||||||||||||| |||||||||||   || |||||||||||||| ||||||||||||||||||    
T  24888749 cattaccttcattcacaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattga 24888826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 17748796 - 17748922
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| |  ||||| ||||||||||||||||||||||||| |||||||||||  |    
T  17748796 attaaaagaactgaacacaaattttatctaatgttgattaacttaatcacctttctctcgttaacttcatccacaagaagtataattttaagtggttcat 17748895  T
Q  281 cgagaaacaattctactgatgcatatc 307  Q
     |||||||||||||| |||||||||||    
T  17748896 tgagaaacaattctagtgatgcatatc 17748922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 308
Target Start/End: Original strand, 24728440 - 24728609
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||||||||||||||||| |||||| || ||||  || |||||||||| |||||| |||||||||||||||||||||||||||||||| |  ||||    
T  24728440 ccatattatattttcatatgtttggatatcgagagaagaataattaaaagaagtcaacataaattttatctaatgttgattaactgaatcacctctctct 24728539  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatct 308  Q
    | ||| ||||||||||||||||||||| ||||| |||||   |  |||||||||| ||| ||||||||||    
T  24728540 cgttaccttcatccacaagaagtataattttaaatggttcaccatgaaacaattccactaatgcatatct 24728609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 32856217 - 32856084
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| |||| |  ||||||||| ||||||||||||||||||||  |||||||||||  |    
T  32856217 attaaaagaattcaacacgaattttatctaatgttgattaactga-tcacctttctctcattaccttcatccacaagaagtatagttttaagtggttcat 32856119  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||| |||| |||||||||||||||    
T  32856118 cgagaaacaattctagtgat-catatctaaaattga 32856084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 140 - 316
Target Start/End: Complemental strand, 6166673 - 6166499
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctc 239  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||||||||| ||||  |||||||| ||||||||  |||||||||||| |  |||||    
T  6166673 catattacattttcatatgatgtgatattgagagaaacatcattaaaagaacttaacattaattttatttaatgttgtctaactgaatcacct--ctctc 6166576  T
Q  240 attaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      ||  ||| |||||||||| ||||| |||||||| ||  ||||||| ||||| |||||||||||||||||||||||    
T  6166575 gctacgttcttccacaagaaatataattttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattga 6166499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 317
Target Start/End: Complemental strand, 9410127 - 9409994
Alignment:
Q  182 ttaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtc 281  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||  | |||||  ||  |||||||||||||||||||| |||||||| ||  ||    
T  9410127 ttaaaagaactcaacacaaaatttatctaatattgattaactgaatcac--atctctcgctacgttcatccacaagaagtataattttaagtgtttcatc 9410030  T
Q  282 gagaaacaattctactgatgcatatctaaaattgag 317  Q
    |||||| ||||||| ||||| |||| ||||||||||    
T  9410029 gagaaataattctattgatgaatatgtaaaattgag 9409994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 327
Target Start/End: Complemental strand, 11990973 - 11990799
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcat 250  Q
    |||| ||||||||||||  | | || |||||||||||||| |||| ||||||||| |||||| |||||||| ||||||   |  ||||| ||| |||| |    
T  11990973 ttcaaatgttgggatatcaacataagcatcattaaaagaattcaatacaaattttgtctaatattgattaattgaatcttctttctctcgttaccttcgt 11990874  T
Q  251 ccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacat 327  Q
    |||||   ||||||| ||| |||||||| || ||||||||||||||| ||||||||||||||||||| |||| ||||    
T  11990873 ccacag--agtataatttttagtggtttatctagaaacaattctactaatgcatatctaaaattgagttatatacat 11990799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 31332514 - 31332603
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatc 228  Q
    ||||||||| |||| |||||||||||||| || |||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||    
T  31332514 ccatattatttttttatatgttgggatatggacagaaacattattaaaaaaattcaacacaaattttatctaatgttgattaattgaatc 31332603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 23877331 - 23877450
Alignment:
Q  197 acaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctac 296  Q
    ||||||||||||||||||| |||||||||| ||| |  ||||| ||| ||| |||||||| |||||||| |||||||||||  |||  |||||||||||     
T  23877331 acaaattttatctaatgttaattaactgaaccacctctctctcgttacctttatccacaataagtataattttaagtggttcatcggaaaacaattctag 23877430  T
Q  297 tgatgcatatctaaaattga 316  Q
    | ||||||||||||||||||    
T  23877431 tcatgcatatctaaaattga 23877450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 11755682 - 11755763
Alignment:
Q  235 ctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||| ||| ||||| || |||||||||||| |||||| ||||  || ||||||||||||||| ||||||||||||||||||    
T  11755682 ctctcgttaccttcaaccgcaagaagtataattttaagcggttcatcaagaaacaattctactaatgcatatctaaaattga 11755763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13003629 - 13003565
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||| ||||||    
T  13003629 tatactaaaacttatatgtatgtaaaa-tatttgaagaaaataaacattgattactcttcattatt 13003565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 31431280 - 31431349
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgatta 220  Q
    ||||||||||  |||||  | |||||||||||||||||||||||||||||||||| |||||| |||||||    
T  31431280 ttcatatgttaagatatccacagaaacatcattaaaagaactcaacacaaattttgtctaatcttgatta 31431349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9410251 - 9410187
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| || ||||||||||||||||||| |||||||||||||||| ||||||    
T  9410251 tataataaaacttatatgtatg-aaaaatacttgaagaaaattaacattgattactcttcattatt 9410187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 11755476 - 11755517
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  11755476 aaaatacttgaagaaaataaacattgattactcttgattatt 11755517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24728286 - 24728350
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| || ||| ||||||| |||||||||||||||||||| |||||||||| ||||||    
T  24728286 tatactaaaacttatttgtatgtaaaa-tacttgaagaaaataaacatcgattactcttcattatt 24728350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 23877286 - 23877320
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgtt 215  Q
    |||||||||||||||||||||||||||||||||||    
T  23877286 attaaaagaactcaacacaaattttatctaatgtt 23877320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 12006927 - 12006858
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgatta 220  Q
    |||||||||||||||||  | | || ||| ||||||||||||| ||||||||||| || |||||||||||    
T  12006927 ttcatatgttgggatatcaagaaaagcataattaaaagaactctacacaaattttgtccaatgttgatta 12006858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31431065 - 31431125
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttat 62  Q
    |||||||||||| |||||  ||||||| |||||||||||||||| ||||||||| |||||||    
T  31431065 tatactaaaacttatatgcatgtaaaa-tacttgaagaaaataagcattgattaatctttat 31431125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 12006836 - 12006778
Alignment:
Q  258 aagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||| |||||| ||||  || | ||||||||||| ||||||||||||||||||||    
T  12006836 aagtataattttaagcggttcatcaaaaaacaattctagtgatgcatatctaaaattga 12006778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 18320844 - 18320774
Alignment:
Q  246 ttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||| |||||||||||| ||| || | ||  || ||||||| ||||||| ||||||||||||||||||    
T  18320844 ttcatccgcaagaagtataattttgagcgattcatcaagaaacatttctacttatgcatatctaaaattga 18320774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 17748770 - 17748799
Alignment:
Q  25 aaaatacttgaagaaaataaacattgatta 54  Q
    ||||||||||||||||||||||||||||||    
T  17748770 aaaatacttgaagaaaataaacattgatta 17748799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26079645 - 26079581
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| |||||  ||||||| |||||||||||||| |  ||||||||||||| ||||||    
T  26079645 tatactaaaacttatatgaatgtaaaa-tacttgaagaaaatcacaattgattactcttcattatt 26079581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 32856262 - 32856214
Alignment:
Q  5 ctaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||||||| |||||| ||||||| |||||||| |||||||||||||||||    
T  32856262 ctaaaacttatatgtatgtaaaa-tacttgaacaaaataaacattgatta 32856214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 13003462 - 13003426
Alignment:
Q  280 tcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||||||| | ||||||||||||||||||    
T  13003462 tcgagaaacaattctagttatgcatatctaaaattga 13003426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 47843652 - 47843824
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  47843652 ccatattatattttcatatgttgggatatcaagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacctatctct 47843751  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |     ||||||||||||||||||||| ||||||||||| |||  ||||||||| || ||||||||||||||||||||    
T  47843752 c-----cttcatccacaagaagtataattttaagtggttcgtcaggaaacaattttattgatgcatatctaaaattga 47843824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 140 - 317
Target Start/End: Original strand, 42040340 - 42040515
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctc 239  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | |||||    
T  42040340 catattacattttcatatgttgggatattgagagaaacatcaataaaagaactcaacacaaattttatctaatgttgattaactgaatcac--atctctc 42040437  T
Q  240 attaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
      |   |||||||||||||||||||| |||||||| ||  |||||| ||||||||| |||||||||||||||||||||    
T  42040438 gatgcgttcatccacaagaagtataattttaagtgtttcatcgagagacaattctattgatgcatatctaaaattgag 42040515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 140 - 316
Target Start/End: Original strand, 45648107 - 45648281
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctc 239  Q
    ||||||| ||||| ||||||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |    
T  45648107 catattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc 45648206  T
Q  240 attaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      ||  |||||||||||||||||||| |||||||||||   ||||||||||||||| ||||||||||||||||||||    
T  45648207 --tatgttcatccacaagaagtataattttaagtggttcaccgagaaacaattctattgatgcatatctaaaattga 45648281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 140 - 314
Target Start/End: Original strand, 25310891 - 25311060
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctc 239  Q
    ||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| || |||   ||     ||    
T  25310891 catattatattttcatatgttgggatattgagagaagcatcgttaaaagaactcaacacaaattttatctaatgttgattagctaaatttttt-----tc 25310985  T
Q  240 attaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaatt 314  Q
    |||| ||||||||||||||||||||| |||||||||||  || |||||||||| ||||| ||||||| |||||||    
T  25310986 attaccttcatccacaagaagtataattttaagtggttcatcaagaaacaattatactgttgcatatttaaaatt 25311060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 3751376 - 3751553
Alignment:
Q  139 ccatattatattttcatat--gttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacct 236  Q
    |||||||||||||||||||  ||| ||| ||||| |||| |||||||||||  |||||||| ||||||||| |||||||||||||||||||||| |  ||    
T  3751376 ccatattatattttcatatatgttaggaaattgagagaagcatcattaaaaacactcaacataaattttatttaatgttgattaactgaatcacct--ct 3751473  T
Q  237 ctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||| ||| |||||| |||||||||||||| |||||||| ||  ||||||||||||| || ||||||||||||||||||||    
T  3751474 ctcgttaccttcattcacaagaagtataattttaagtgattcatcgagaaacaattttattgatgcatatctaaaattga 3751553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 186 - 316
Target Start/End: Complemental strand, 40836583 - 40836453
Alignment:
Q  186 aagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgaga 285  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |  ||||| ||| ||||||||| ||||||||||| |||||||||||  ||||||    
T  40836583 aagaacttaacacaaattttatcgaatgttgattaactgaatcacctctctctcgttaccttcatccataagaagtataattttaagtggttcatcgaga 40836484  T
Q  286 aacaattctactgatgcatatctaaaattga 316  Q
    |||||||||| ||||||||||||||||||||    
T  40836483 aacaattctagtgatgcatatctaaaattga 40836453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 48153229 - 48153096
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||||| |  ||||| |||  |||||||||||||||||||| || ||||||||  |    
T  48153229 attaaaagaactcaaga--aattttatctaatgttgattaactgaatcacctctctctcgttacattcatccacaagaagtataatttcaagtggttcat 48153132  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||| |||||||| |||||||||||    
T  48153131 cgagaaacaattctagtgatgcatgtctaaaattga 48153096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 43495674 - 43495811
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctca--ttaacttcatccacaagaagtataaatttaagtggttt 278  Q
    |||||||||||| ||| |||||||||||||||||| ||||| ||||||||| |||||||   ||| |||||| ||||||| |||||| |||||||||||     
T  43495674 attaaaagaacttaactcaaattttatctaatgttaattaaatgaatcactcacctctctcgttaccttcattcacaagatgtataattttaagtggttc 43495773  T
Q  279 gtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     ||||||||||||| || ||||||||||||||||||||    
T  43495774 atcgagaaacaattttagtgatgcatatctaaaattga 43495811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 42509410 - 42509323
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaa 226  Q
    |||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42509410 ccatattatactttcatatgttgggatatcgagagaagcatcattaaaagaactcaacacaaattttatctaatgttgattaattgaa 42509323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 45492412 - 45492227
Alignment:
Q  139 ccatattatattttcatat--gttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcac------ 230  Q
    |||||||||| ||||||||  ||| |||||| || ||||  || ||||||||||||||||||| ||||||||||||||||||||||||||||||          
T  45492412 ccatattatactttcatatatgtttggatatcgagagaagaataattaaaagaactcaacacatattttatctaatgttgattaactgaatcacctctct 45492313  T
Q  231 ttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     |  ||||||||| ||||||||||||||||||||| |||||||| ||    | |||||||||| ||| ||||||||||||||||||    
T  45492312 ctctctctcattaccttcatccacaagaagtataattttaagtgattcactgtgaaacaattcgactaatgcatatctaaaattga 45492227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 2185630 - 2185757
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacct--c 237  Q
    ||||||||||||||||||||| |||||| || ||||  || |||||||||||||||||||||||||||| |||||||||||| |||||||  |  ||  |    
T  2185630 catattatattttcatatgtttggatatcgacagaagaataattaaaagaactcaacacaaattttatcaaatgttgattaaatgaatcatctctctccc 2185729  T
Q  238 tcattaacttcatccacaagaagtataa 265  Q
    |||||| |||||||||||||||||||||    
T  2185730 tcattaccttcatccacaagaagtataa 2185757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 25482505 - 25482661
Alignment:
Q  156 atgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccaca 255  Q
    ||||||| ||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||| |  |||||  ||   |||||||||    
T  25482505 atgttggaatattgagagaaatatcattaaaagaactcaacatatattttatctaatgttgattaactgagtcacct--ctctcgctacgatcatccaca 25482602  T
Q  256 agaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    | |  ||||  |||||||| ||  |||| |||||||| || ||||||||||||||||||||    
T  25482603 aca--tatatttttaagtgtttcatcgaaaaacaattatattgatgcatatctaaaattga 25482661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 45805037 - 45804918
Alignment:
Q  186 aagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgaga 285  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||  |  ||||| ||| |||||||||| | ||||||||||||||||||||  ||  ||    
T  45805037 aagaactcaacacaaattttatctgatgatgattaattgaatcatct--ctctcgttaccttcatccacgaaaagtataaatttaagtggttcatcagga 45804940  T
Q  286 aacaattctactgatgcatatc 307  Q
    |||||||||| |||||||||||    
T  45804939 aacaattctaatgatgcatatc 45804918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 43728166 - 43728101
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattt 204  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||    
T  43728166 ccatattatattttcatatgttgggatatcgagagaagcatcattaaaaaaactcaacacaaattt 43728101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 2185500 - 2185545
Alignment:
Q  21 tgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  2185500 tgtaaaaatacttgaagaaaataaacattgattactcttcattatt 2185545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40837322 - 40837273
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattg 50  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40837322 tatactaaaacttatatgtatgtaaaaatacttgaagaaaataaacattg 40837273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 22201304 - 22201167
Alignment:
Q  178 atcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacct--ctcattaacttcatccacaagaagtataaatttaagtgg 275  Q
    |||||||||| | ||||||||||||||| |||| | |||||||| |||||  |||   |  ||||||| ||||||  | |||||| |||| |||||||||    
T  22201304 atcattaaaatagctcaacacaaattttgtctactattgattaattgaatatcttcatttcctcattaccttcattaataagaagcataattttaagtgg 22201205  T
Q  276 tttgtcgagaaacaattctactgatgcatatctaaaatt 314  Q
    ||| ||||||||||||||||| ||| || ||||||||||    
T  22201204 tttatcgagaaacaattctaccgataca-atctaaaatt 22201167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 22236517 - 22236654
Alignment:
Q  178 atcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacct--ctcattaacttcatccacaagaagtataaatttaagtgg 275  Q
    |||||||||| | ||||||||||||||| |||| | |||||||| |||||  |||   |  ||||||| ||||||  | |||||| |||| |||||||||    
T  22236517 atcattaaaatagctcaacacaaattttgtctactattgattaattgaatatcttcatttcctcattaccttcattaataagaagcataattttaagtgg 22236616  T
Q  276 tttgtcgagaaacaattctactgatgcatatctaaaatt 314  Q
    ||| ||||||||||||||||| ||| || ||||||||||    
T  22236617 tttatcgagaaacaattctaccgataca-atctaaaatt 22236654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 7858065 - 7857951
Alignment:
Q  202 ttttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatg 301  Q
    |||||||||||||||||||| |||||| | |  ||||  ||| | |||||||||| || ||||  |||||||||||    ||||||||||||||||| |     
T  7858065 ttttatctaatgttgattaattgaatctcctctctcttgttaccatcatccacaataaatatatttttaagtggttcaatgagaaacaattctactgttt 7857966  T
Q  302 catatctaaaattga 316  Q
    |||||||||||||||    
T  7857965 catatctaaaattga 7857951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 22542698 - 22542739
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  22542698 aaaatacttgaagaaaataaacattgattactcttcattatt 22542739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47843506 - 47843570
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  47843506 tataataaaacttatatgtatgtaaaa-tacttgaagaaaataaacattgattacccttcattatt 47843570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42040197 - 42040260
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||  |||||||||||||| |||||||||||||||| ||||||    
T  42040197 tataataaaacttatatgtatgtaaa--tacttgaagaaaattaacattgattactcttcattatt 42040260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25310750 - 25310802
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||||||||||| |||||| ||||||| || |||||||||||||||||||||||    
T  25310750 tatactaaaacttatatgtatgtaaaa-tatttgaagaaaataaacattgatta 25310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 45492532 - 45492491
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  45492532 aaaatacttgaagaaaatatacattgattactcttcattatt 45492491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3751258 - 3751299
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||||| ||||||||| |||| ||||||    
T  3751258 aaaatacttgaagaaaataatcattgattattcttcattatt 3751299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 34471935 - 34471894
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatcactta 233  Q
    ||||| ||||||||||| |||||||||||| |||||||||||    
T  34471935 tcaacgcaaattttatcaaatgttgattaattgaatcactta 34471894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43495625 - 43495677
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||||||||||| |||||| ||||||| ||  ||||||||||||||||||||||    
T  43495625 tatactaaaacttatatgtatgtaaaa-tatctgaagaaaataaacattgatta 43495677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43728309 - 43728245
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||| || |||||| ||| ||| ||||| ||||||||||||| ||||||||||| ||||||    
T  43728309 tatactaaatcttatatgtatgtgaaa-tacttaaagaaaataaacactgattactcttaattatt 43728245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 2185763 - 2185795
Alignment:
Q  284 gaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||||| ||||||||||||||||||    
T  2185763 gaaacaattctactaatgcatatctaaaattga 2185795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 141 - 316
Target Start/End: Complemental strand, 4966923 - 4966749
Alignment:
Q  141 atattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctca 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |  |||||     
T  4966923 atattatattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctcg 4966824  T
Q  241 ttaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||  |||||||||||||||||| | ||||||| |||  ||||||||||||||||| |||| ||||||||||||||    
T  4966823 ttactttcatccacaagaagtat-attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattga 4966749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 139 - 317
Target Start/End: Complemental strand, 17116490 - 17116314
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||  | ||||    
T  17116490 ccatattacatattcatatgttgggatattgagagaaacataattaaaagaactcaacacaaattttatctaatgttgattaactaaatcac--atctct 17116393  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    | |||  |||||||||||||||||||| |||||||| ||  |||| ||| ||||||| |||||||||||||||||||||    
T  17116392 cgttacgttcatccacaagaagtataattttaagtgtttcatcgaaaaataattctattgatgcatatctaaaattgag 17116314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 25294518 - 25294693
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| |||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  |||    
T  25294518 ccatattacattttcatgtgttggaatattgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcacata--tct 25294615  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |  ||  ||||||||||| |||||||| |||||||| ||| |||||||||| ||||| ||||||||||||||||||||    
T  25294616 cgctatgttcatccacaaaaagtataattttaagtgttttatcgagaaacacttctattgatgcatatctaaaattga 25294693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 38682798 - 38682979
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcac--ttac-- 234  Q
    |||||||||||||| | |||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||  | ||      
T  38682798 ccatattatatttttaaatgttgggatatcgagagaaacataatgaaaagaactcaacacaaattttatctaatgttgattagctgaatcaccatcacct 38682897  T
Q  235 ctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  38682898 ctctcgttaccttcatccacaagaattataattttaagtggttaatcgagaaacaattctattgatgcatatctaaaattga 38682979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 141 - 316
Target Start/End: Original strand, 4972959 - 4973137
Alignment:
Q  141 atattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctc--- 237  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||       
T  4972959 atattatatttttatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcatctctctctct 4973058  T
Q  238 -tcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     || |||  |||||||||||||||||| | ||||||| |||  ||||||||||||||||| |||| ||||||||||||||    
T  4973059 ttccttactttcatccacaagaagtat-attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattga 4973137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 40032871 - 40032740
Alignment:
Q  143 attatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcatt 242  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||    
T  40032871 attatattttcatatgttgggatatcgagaaaaacatcattaaaagaactcaacacaaattttatataatgttgattaactgaatcaccttcctctcgtt 40032772  T
Q  243 aacttcatccacaagaagtataaatttaagtg 274  Q
    | |||||| |||||||||||||| ||||||||    
T  40032771 accttcattcacaagaagtataattttaagtg 40032740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 317
Target Start/End: Complemental strand, 50726869 - 50726716
Alignment:
Q  162 ggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagt 261  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  | |||||  ||  ||||||||||||||||    
T  50726869 ggatattgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcac--atctctcgctacgttcatccacaagaagt 50726772  T
Q  262 ataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    |||| |||||| | ||  |||||||||||||||| ||| |||||||||||||||||    
T  50726771 ataattttaagcgtttcatcgagaaacaattctattgacgcatatctaaaattgag 50726716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 13558682 - 13558547
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  |  ||||| ||| ||||||||||||||||||||| |||||||||||  |    
T  13558682 attaaaagaactcaacacacattttatctaatgttgattaactgaatcatctctctctcgttaccttcatccacaagaagtataattttaagtggttcat 13558583  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||| || ||||||||||||||||||||    
T  13558582 cgagaaacaattttagtgatgcatatctaaaattga 13558547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 315
Target Start/End: Complemental strand, 14287262 - 14287085
Alignment:
Q  139 ccatattatattttcatat--gttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgtt-gattaactgaatcacttacc 235  Q
    |||||||||| ||||||||  ||| |||||| || ||||  || ||||||||||||||||||| ||||||||||||||| |||||| |||||||| |  |    
T  14287262 ccatattatactttcatatatgtttggatatcgagagaagaataattaaaagaactcaacacatattttatctaatgtttgattaattgaatcacct--c 14287165  T
Q  236 tctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattg 315  Q
    |||||||| ||||||||||||||||||||| |||||||||||   || |||||||||||||| |||||||||||||||||    
T  14287164 tctcattaccttcatccacaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattg 14287085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 139 - 317
Target Start/End: Complemental strand, 41827914 - 41827739
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  |  |||    
T  41827914 ccatattacattttcatatgctgggatattgagagaaacatcattaaaagatcccaacacaaattttatctaatgttgattaactgaatcac--atttct 41827817  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    |  ||  ||||||||||| |||||||| |||||||| ||  | ||||| |||||||| | || ||||| ||||||||||    
T  41827816 cgctacgttcatccacaa-aagtataattttaagtgtttcattgagaatcaattctattcatacatatataaaattgag 41827739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 13644011 - 13643921
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcac 230  Q
    ||||||||||||||||||||||||||||  | | || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  13644011 catattatattttcatatgttgggatatcaagataagcatcattaaaagaactcaacacaaattttatctaatgttgaataattgaatcac 13643921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 11767567 - 11767703
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagt---ataaatttaagtggtt 277  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| |  ||||| |||  ||||||| ||||||||   |||| |||||||||||    
T  11767567 attaaaagaactcaaca--aattttatctaatgttgattaactgaatcacatttctctcgttactttcatccgcaagaagtataataattttaagtggtt 11767664  T
Q  278 tgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      |||||||| ||||||| | ||||||||||||||||||    
T  11767665 aatcgagaaaaaattctagttatgcatatctaaaattga 11767703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 317
Target Start/End: Original strand, 31513509 - 31513676
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||    | ||||     | ||||||||||||||||||||||||  | ||||    
T  31513509 ccatattacattttcatatgttgggatattgagagaaacatcattaaaaga----atcaca-----tctctaatgttgattaactgaatcac--atctct 31513597  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    | |||   |||||||  | |||||||| ||||| || ||  |||||||||||||||| |||||||||||||||||||||    
T  31513598 cgttacgatcatccaacataagtataattttaactgtttcatcgagaaacaattctattgatgcatatctaaaattgag 31513676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 313
Target Start/End: Original strand, 51898828 - 51898989
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcat 250  Q
    |||||||||||||||||  | |||||||||||||||||||||||| |||| |||| ||||||||||||||| |  ||| | |   |||| ||| ||||||    
T  51898828 ttcatatgttgggatatcaatagaaacatcattaaaagaactcaa-acaatttttgtctaatgttgattaattctatctcctctttctcgttaccttcat 51898926  T
Q  251 ccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaat 313  Q
    ||||||||||| ||| |||  ||||||  ||||||||||||| ||  | ||||| ||||||||    
T  51898927 ccacaagaagtgtaattttcggtggttcatcgagaaacaattatatcggtgcatgtctaaaat 51898989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 317
Target Start/End: Complemental strand, 40694120 - 40693995
Alignment:
Q  190 actcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaaca 289  Q
    |||||||| |||||||||||||| |||||||||||||| || |  |||||  |   |||||||| ||||||||||| |||||||| ||  |||| |||||    
T  40694120 actcaacataaattttatctaatattgattaactgaatgacat--ctctcgctgcattcatccaaaagaagtataattttaagtgtttcatcgaaaaaca 40694023  T
Q  290 attctactgatgcatatctaaaattgag 317  Q
    |||||| |||||||||||||| ||||||    
T  40694022 attctattgatgcatatctaatattgag 40693995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 271135 - 270997
Alignment:
Q  178 atcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtt 277  Q
    |||| |||||||| | |||  ||||||| ||||| ||||||||| |||||  |||  ||||| ||| ||||||||||||  ||||||| |||||||| ||    
T  271135 atcactaaaagaatttaaccaaaattttgtctaacgttgattaattgaatatcttctctctcgttaccttcatccacaaatagtataattttaagtgatt 271036  T
Q  278 tgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      | |||||| |||| |||||||| ||||||||||||||    
T  271035 catagagaaagaattatactgatgtatatctaaaattga 270997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 14287383 - 14287342
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  14287383 aaaatacttgaagaaaatatacattgattactctttattatt 14287342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 16122935 - 16122854
Alignment:
Q  235 ctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||| ||| ||| |||| |||||||| ||| || ||||||||  || |||||||||| |||||||||||||||||||||||    
T  16122935 ctctcgttacctttatccgcaagaagtgtaatttgaagtggttcatcaagaaacaattatactgatgcatatctaaaattga 16122854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31513366 - 31513430
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  31513366 tataataaaacttatatgtatgtaaaa-tacttgaagaaaattaacattgattactcttcattatt 31513430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 49899544 - 49899480
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| ||||||  |||||| ||||| ||||||||||||||||||||||||| ||||||    
T  49899544 tatactaaaacttatatgtaagtaaaa-tacttaaagaaaataaacattgattactcttcattatt 49899480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 38682679 - 38682713
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  38682679 aaaatacttgaagaaaataaacattgattactctt 38682713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11767518 - 11767570
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||||||||||  |||||| ||||||| ||||||||||||||||||||||||||    
T  11767518 tatactaaaacatatatgtatgtaaaa-tacttgaagaaaataaacattgatta 11767570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25294375 - 25294439
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  25294375 tataataaaacttatatgtatgtaaaa-tacttcaagaaaattaacattgattactcttcattatt 25294439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 16123135 - 16123095
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  16123135 aaaatacttgaagaaa-taaacattgattactcttgattatt 16123095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40694210 - 40694169
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||| || ||||||||||||| ||||||    
T  40694210 aaaatacttgaagaaaattaatattgattactcttcattatt 40694169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41828056 - 41827992
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| | |||| ||||||||| ||||||    
T  41828056 tataataaaacttatatgtatgtaaaa-tacttgaagaaaattagcattaattactcttcattatt 41827992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 10443815 - 10443752
Alignment:
Q  2 atactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||| |||||| | ||||| |||||||||||||||| |||||| ||| ||| ||||||    
T  10443815 atactaaaacttatatgtatataaaa-tacttgaagaaaataagcattgactacccttcattatt 10443752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 139 - 317
Target Start/End: Complemental strand, 2295614 - 2295438
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  | ||||    
T  2295614 ccatattacattttcatatgttgggatattgagagaaacatcgttaaaagaactcaacacaaattttatctaatgttgattaactgaattac--atctct 2295517  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    |  ||  |||||||||||||||||||| |||||||| ||  |||||||||||||||| ||||| |||||| ||||||||    
T  2295516 cgctacgttcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgaatatcttaaattgag 2295438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 139 - 314
Target Start/End: Original strand, 19721589 - 19721762
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | ||||    
T  19721589 ccatattaaattttcatatgttaggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaattgaatcac--atctct 19721686  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaatt 314  Q
    |  ||  |||||||||||||||||||| |||||||| ||  | |||||||||||||| ||||||||||| ||||||    
T  19721687 cgctacgttcatccacaagaagtataattttaagtgtttaattgagaaacaattctattgatgcatatccaaaatt 19721762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 53018447 - 53018622
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||  ||| || || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||  |||    
T  53018447 ccatattacattttcatatgtcaggacatcgagagaaacatcattaaaagaactcaacataaattttatttaatgttgattaactgaatcaccta--tct 53018544  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |  ||  ||||||||||| |||||||| ||||| || ||  | |||||||||||||| ||||||||||||||||||||    
T  53018545 cgctatgttcatccacaataagtataattttaactgattcattgagaaacaattctattgatgcatatctaaaattga 53018622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 140 - 316
Target Start/End: Original strand, 35103397 - 35103571
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctc 239  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||  ||||| |||||| |  |||||    
T  35103397 catattatattttcatatgttgggatatcgagagaaacattattaaaagaactcaacacaaattttatctaatgttgtgtaactaaatcacct--ctctc 35103494  T
Q  240 attaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      ||  ||| |||||||||||||||| |||||||| ||  ||  ||| ||||| || ||||||||||||||||||||    
T  35103495 gctacgttcttccacaagaagtataattttaagtgtttcatccggaatcaattataatgatgcatatctaaaattga 35103571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 27675684 - 27675505
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||| || || ||||||| |||||| |  || |    
T  27675684 ccatattatattttcatatgttgggatatcgagataagcatcattaaaagaactcaacacaaattttatctgatattaattaactaaatcacctctcttt 27675585  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtt---tgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      ||| |||||||||||| |||||| | |||||||||||   | | |||||||||||||| ||||||||||||||||||||    
T  27675584 tgttaccttcatccacaaaaagtat-attttaagtggttcaatattgagaaacaattctattgatgcatatctaaaattga 27675505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 7208404 - 7208580
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||||||||| ||| || ||||||| || ||||||||||||||||| |||||||| || |||||||||| ||||||||||| ||| ||||  ||||    
T  7208404 ccatattatatttt-atacgtagggatatcgagagaaacatcattaaaaggactcaacaaaatttttatctaaagttgattaactaaattacttctctct 7208502  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      || |||||||||||||||||||||| || ||||||||| |||| ||||||||||| |||||||  ||| |||||||    
T  7208503 tgttgacttcatccacaagaagtataatttcaagtggtttatcgaaaaacaattctattgatgcacgtctgaaattga 7208580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 1052505 - 1052369
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatc-acttacctctcattaacttcatccacaagaagtataaatttaagtggtttg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| || |  ||||| ||| ||||||||||||||| ||||| |||||||||||      
T  1052505 attaaaagaactcaacacaaattttatctaatgttgattaactagatccacctctctctcgttaccttcatccacaagaaatataattttaagtggttaa 1052406  T
Q  280 tcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||||||| |||||||||| |||||||||    
T  1052405 tcgagaaacaattctagtgatgcatatgtaaaattga 1052369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 2242773 - 2242899
Alignment:
Q  148 attttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaactt 247  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |  ||||   ||  ||    
T  2242773 attttcatatgttgggatatcgagagaaacatcattaaaagaactcaacacaaattttatctaatattgattaactgaatcatctctctcttgctatgtt 2242872  T
Q  248 catccacaagaagtataaatttaagtg 274  Q
    |||| ||||||||||||| ||||||||    
T  2242873 catctacaagaagtataattttaagtg 2242899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 15476628 - 15476803
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||| |||||| ||| || | ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||  ||||    
T  15476628 ccatattacattttcataagttgggttatcgagaaaaacatcattaaaagaactcaacgcaaattttatctaatgttgattaattaaatcactt--ctct 15476725  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |  ||  |||||||| ||||| ||||| |||||||||||  ||   ||||||||| | | ||||||||||||||||||    
T  15476726 cgctacgttcatccataagaattataattttaagtggttcatcagtaaacaattcaattaatgcatatctaaaattga 15476803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 6008403 - 6008270
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||| |  ||||| |||  || ||||||||||||||||| |||||||||||  |    
T  6008403 attaaaagaactcaacacaaattttatttaatgtttattaactgaatcacct--ctctcgttacttttatccacaagaagtataattttaagtggttcat 6008306  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||| | || |||||||| ||||||    
T  6008305 cgagaaacaattctagttatacatatctataattga 6008270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 40217803 - 40217624
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| |  ||||    
T  40217803 ccatattatattttcatatgttgggatatcgcgagaaacatcattataa-aactcaacacaaattttatctaatgttgtttaactgaatcacatttctct 40217705  T
Q  239 cattaacttcatccacaagaagtataaa----tttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    | ||| ||||||||| || || || |||    ||||||| |||| || |||||||||||||| || |||||  |||||||||    
T  40217704 cgttaccttcatccaaaaaaaataaaaatatttttaagt-gtttatcaagaaacaattctaccgacgcatacataaaattga 40217624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 174 - 316
Target Start/End: Complemental strand, 44987471 - 44987331
Alignment:
Q  174 aaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagt 273  Q
    |||||||||||||||||||| |||  |||||| | ||||||||||||| |||||| |||  || || ||| ||||||||||||||||||||| |||||||    
T  44987471 aaacatcattaaaagaactcgaca--aattttgtataatgttgattaattgaatctcttctctttcgttaccttcatccacaagaagtataattttaagt 44987374  T
Q  274 ggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     |||  | ||||||||||||||| |||||||||||||||||||    
T  44987373 agttcattgagaaacaattctaccgatgcatatctaaaattga 44987331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 316
Target Start/End: Complemental strand, 45774245 - 45774074
Alignment:
Q  140 catattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctc 239  Q
    ||||||| ||||| ||| ||||||||||    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |  |||||    
T  45774245 catattacatttttatacgttgggatatcaggagaaacatcattaaaagaactcaagacaaattttatcaaatgttggttaactgaatcacct--ctctc 45774148  T
Q  240 attaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
      ||  |||||||   | |||||||| |||||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  45774147 gctacgttcatcc---ataagtataattttaagtggttcatcgagaaacaattctattgatgtatatctaaaattga 45774074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 24917714 - 24917590
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaat 291  Q
    ||||||||||||||||| || ||||||||| |||||||  |  ||||||||| ||||||||| |||||| |||| |||||||||||  ||||||||||||    
T  24917714 tcaacacaaattttatccaacgttgattaattgaatcatctctctctcattaccttcatccataagaagaataattttaagtggttcatcgagaaacaat 24917615  T
Q  292 tctactgatgcatatctaaaattga 316  Q
    |||||| ||| ||||||||||||||    
T  24917614 tctactaatgtatatctaaaattga 24917590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 337
Target Start/End: Complemental strand, 4775994 - 4775835
Alignment:
Q  177 catcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggt 276  Q
    ||||||| ||||||||||||||||||||| |||||||  |||||||| |||| | |   ||||  ||||||||||||||| |||||||| |||||||||     
T  4775994 catcattgaaagaactcaacacaaattttgtctaatgccgattaactaaatctcctctttctcgctaacttcatccacaataagtataattttaagtgga 4775895  T
Q  277 ttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttctactaaa 337  Q
    || |||||||||||||    |||||||||||||||||||| | ||| ||||||| ||||||    
T  4775894 ttatcgagaaacaattactttgatgcatatctaaaattgatc-atatacatttccactaaa 4775835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 316
Target Start/End: Complemental strand, 53586583 - 53586466
Alignment:
Q  199 aaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactg 298  Q
    |||||||||||||| ||||||||||||||||| |  ||||  ||| |||||||||| |||||||||| ||||||| |||  ||||||||||||| || ||    
T  53586583 aaattttatctaatattgattaactgaatcacctctctcttgttaccttcatccacgagaagtataattttaagtagttcatcgagaaacaattatagtg 53586484  T
Q  299 atgcatatctaaaattga 316  Q
    |||||||||| |||||||    
T  53586483 atgcatatctgaaattga 53586466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 330
Target Start/End: Original strand, 35823518 - 35823659
Alignment:
Q  179 tcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggttt 278  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||| |||  ||||| |||||||||||||||||          | || ||||||    
T  35823518 tcattaaaagaactcaacacaaattttgtataatgttgattaattgaatctcttctctctcgttaacttcatccacaag----------taaaatggttt 35823607  T
Q  279 gtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttc 330  Q
     |||||||||||||||||| || |||||||||||||||  |||| |||||||    
T  35823608 atcgagaaacaattctactaattcatatctaaaattgaattatatacatttc 35823659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 47922890 - 47922957
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaatttta 206  Q
    |||||||||||| |||||||||||||||| || |||| | ||||||||||||||||||||||||||||    
T  47922890 ccatattatattatcatatgttgggatatcgagagaagcgtcattaaaagaactcaacacaaatttta 47922957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 25059454 - 25059558
Alignment:
Q  174 aaacatcattaaaagaactcaacacaaattttatctaatgttga-ttaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaag 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||  |||||| | | | |||| ||| ||||| ||| ||||| ||||| ||||||    
T  25059454 aaacatcatcaaaagaactcaacacaaattttatctaatgttgatttagttgaatctcctccatctcgttaccttcacccataagaaatataattttaag 25059553  T
Q  273 tggtt 277  Q
    |||||    
T  25059554 tggtt 25059558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22588386 - 22588329
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctt 59  Q
    |||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||||    
T  22588386 tatactaaaacttatatgtatataaaa-tacttgaagaaaataaacattgattactctt 22588329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40217946 - 40217889
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctt 59  Q
    |||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||||    
T  40217946 tatactaaaacttatatgtatataaaa-tacttgaagaaaataaacattgattactctt 40217889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 10037872 - 10037921
Alignment:
Q  267 tttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  10037872 tttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattga 10037921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 28101768 - 28101809
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  28101768 aaaatacttgaagaaaataagcattgattactctttattatt 28101809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 7208266 - 7208325
Alignment:
Q  5 ctaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattat 65  Q
    |||||||| |||||| ||||||| || |||||||||||||||||||||||||||| |||||    
T  7208266 ctaaaacttatatgtatgtaaaa-tatttgaagaaaataaacattgattactcttcattat 7208325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 10037711 - 10037752
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  10037711 aaaatacttgaagaaaattagcattgattactctttattatt 10037752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19721446 - 19721510
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| || ||||||||||||| ||||||    
T  19721446 tataataaaacttatatgtatgtaaaa-tacttgaagaaaattaatattgattactcttcattatt 19721510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 25059147 - 25059188
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  25059147 aaaatacttgaagaaaataaacattgagtactcttcattatt 25059188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 53018309 - 53018373
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| ||||||| |||||||| ||||||    
T  53018309 tataataaaacttatatgtatgtaaaa-tacttgaagaaaattaacattgtttactcttcattatt 53018373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27675832 - 27675775
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctt 59  Q
    |||| ||||||| |||| ||||||||| |||||||||||||||||| |||| |||||||    
T  27675832 tataataaaacttatatatgtgtaaaa-tacttgaagaaaataaactttgagtactctt 27675775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2242621 - 2242685
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| ||||  |||||||||| ||||||    
T  2242621 tataataaaacttatatgtatgtaaaa-tacttgaagaaaattaacaccgattactcttcattatt 2242685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 2295733 - 2295692
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||| |||||| ||||||||| ||||||    
T  2295733 aaaatacttgaagaaaatcaacattaattactcttcattatt 2295692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6008452 - 6008400
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  6008452 tatattaaaacttatatgtatgtaaaa-tacttgaagaaaataaacattaatta 6008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 47922766 - 47922807
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||| ||||||||||||| |||||||||||||| ||||||    
T  47922766 aaaatatttgaagaaaataagcattgattactcttcattatt 47922807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 139 - 317
Target Start/End: Original strand, 2032237 - 2032415
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaa-gaactcaacacaaattttatctaatgttgattaactgaatcacttacctc 237  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  | |||    
T  2032237 ccatattacattttcatatgttaggatattgagagaaacatcattaaaaagaactcaacacaaattttatctaatgttgattaactgaataac--atctc 2032334  T
Q  238 tcattaacttcatccacaagaagtataaatttaagtggtttgt-cgagaaacaattctactgatgcatatctaaaattgag 317  Q
    ||  ||  |||||||||||||||||||| |||||||| ||  | ||||||||||||||| |||||||||||||||||||||    
T  2032335 tcgctacgttcatccacaagaagtataattttaagtgtttcatccgagaaacaattctattgatgcatatctaaaattgag 2032415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 687965 - 688137
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||||||   |||||||||||||||| |   |||    
T  687965 ccatattacattttcatatgttaggatatcgagagaaacatcattaaaagaactcgacacaaattttatctaa---tgattaactgaatcacct--ttct 688059  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
       ||  |||||||||||||||||||| |||||||||||  ||||||||||||| || ||||||||||||||||||||    
T  688060 tgctacattcatccacaagaagtataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattga 688137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 142 - 316
Target Start/End: Original strand, 32340162 - 32340334
Alignment:
Q  142 tattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcat 241  Q
    |||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| || |  ||||  |    
T  32340162 tattatattttcatatgttgggatatcgagagaatcatcatcaaaagaactcaacacaaattttatctaatgttgattagctgaattacct--ctcttgt 32340259  T
Q  242 taacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    || |||||| | |||||||||||| ||||| |||||  |||| ||||||||||| |||||||||| | |||||||    
T  32340260 taccttcattcccaagaagtataattttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattga 32340334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 151 - 310
Target Start/End: Original strand, 12283614 - 12283773
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcat 250  Q
    |||||||||||||||||  | |||| |||||||||||||| ||||||||||||||   ||||||||||||| |||||| | |  ||||| ||||||||||    
T  12283614 ttcatatgttgggatatcaatagaagcatcattaaaagaattcaacacaaattttgattaatgttgattaattgaatctcctctctctcgttaacttcat 12283713  T
Q  251 ccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaa 310  Q
    |||||| |||||||| || ||||||||  || ||||||||||||||||||||||||||||    
T  12283714 ccacaaaaagtataatttaaagtggttcatccagaaacaattctactgatgcatatctaa 12283773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 2988051 - 2988186
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||  |  ||||| ||| |||| ||||||| || ||||| |||||||||||  |    
T  2988051 attaaaagaactcaacacatatattatctaatattgattaactgaatcagctctctctcgttaccttcttccacaaaaaatataattttaagtggttcat 2988150  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||| || ||||||||||||||||||||    
T  2988151 cgagaaacaattttagtgatgcatatctaaaattga 2988186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 316
Target Start/End: Original strand, 12311919 - 12312081
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcat 250  Q
    |||||||||||||||||  | |||| |||||| ||||||||||||||||| |||| | ||||||||||||| |||||  | |  ||||| ||||||||||    
T  12311919 ttcatatgttgggatatcaatagaagcatcatcaaaagaactcaacacaagttttgtttaatgttgattaattgaatatcctctctctcgttaacttcat 12312018  T
Q  251 ccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||   || ||||| || ||||||||  |||||||||||||||| ||||||||||||||||||||    
T  12312019 ccac---aactataatttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattga 12312081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 151 - 316
Target Start/End: Complemental strand, 8486171 - 8486006
Alignment:
Q  151 ttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcat 250  Q
    ||||||||||| |||||  | |||| ||||||||||| || || || |||||||| ||||||||||||||  |||||| | |  ||||| ||| || |||    
T  8486171 ttcatatgttgagatatcaagagaagcatcattaaaataattctacgcaaattttgtctaatgttgattagttgaatctcatctctctcgttacctccat 8486072  T
Q  251 ccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    || |||||||||||| |||||| ||||  || ||||||||||||||||||||||||||||||||||    
T  8486071 ccgcaagaagtataattttaagcggttcatcaagaaacaattctactgatgcatatctaaaattga 8486006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 22297252 - 22297343
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcac 230  Q
    |||||||||||||||||||||||||||||  | | || |||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22297252 ccatattatattttcatatgttgggatatcaagataagcattgttaaaagaactcaacataaattttatctaatgttgattaactgaatcac 22297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 7435019 - 7434884
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||| |  ||||| ||| |||  |||| || |||||||| ||||||||||   |    
T  7435019 attaaaagaactcaacacaaatgttatctagtgttgattaactgaatcacctctctctcgttacctttgtccataaaaagtataattttaagtggtccat 7434920  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||  | | |||||||||| |||||    
T  7434919 cgagaaacaattctcgtaacgcatatctaagattga 7434884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 10229647 - 10229510
Alignment:
Q  179 tcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggttt 278  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| |||||| |  ||||| |||  ||  | |||||||||||||| |||||||||||     
T  10229647 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcacctcactctcgttacatttgttcacaagaagtataattttaagtggttc 10229548  T
Q  279 gtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     || | ||||||||||| | ||||||||||| ||||||    
T  10229547 atcaaaaaacaattctagttatgcatatctataattga 10229510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 30928500 - 30928378
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaat 291  Q
    ||||||||||||||||  |||||||||||| |||||||  |  ||||| ||| |||||| || ||||||||||| |||||||||||  || |||||||||    
T  30928500 tcaacacaaattttattcaatgttgattaattgaatcatct--ctctcgttaccttcattcataagaagtataattttaagtggttcatcaagaaacaat 30928403  T
Q  292 tctactgatgcatatctaaaattga 316  Q
    | ||||| ||||||| |||||||||    
T  30928402 tatactggtgcatatataaaattga 30928378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 10567416 - 10567349
Alignment:
Q  244 acttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaa 311  Q
    |||||||||||||||||||||| |||||||| ||  |||||||||||||||| |||||||||||||||    
T  10567416 acttcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaa 10567349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22054419 - 22054357
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||| || ||   |||||||||||||||||||||||||| |||||||||||||||    
T  22054419 tatactaaaactcatgtgagt---aaaatacttgaagaaaataaacattggttactctttattatt 22054357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 334
Target Start/End: Complemental strand, 22054080 - 22053932
Alignment:
Q  182 ttaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtc 281  Q
    ||||||||||||||||   |||| |||||| ||||||||| ||||| |  |  ||||||||| ||||||||| | |||||||||||||| ||||||  |     
T  22054080 ttaaaagaactcaacatgcatttcatctaaagttgattaattgaatgatct--ctctcattaccttcatccagaggaagtataaattta-gtggttcatt 22053984  T
Q  282 gagaaacaattctactgatgcatatctaaaattgagctatacacatttctact 334  Q
     ||||||||||| | |||||| ||||||||||||| |  ||||||| ||||||    
T  22053983 -agaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctact 22053932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30928632 - 30928568
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||| |||| | ||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  30928632 tatactaaaacttatatatatgtaaaa-tacttgaagaaaataaacattgattacccttcattatt 30928568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 22297127 - 22297165
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttatt 63  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22297127 aaaatacttgaagaaaatgaacattgattactctttatt 22297165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2988002 - 2988054
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    ||||||||| || |||||| ||||||| ||||||||||||||||||||||||||    
T  2988002 tatactaaaccttatatgtatgtaaaa-tacttgaagaaaataaacattgatta 2988054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7435068 - 7435016
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    ||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||    
T  7435068 tatactaaaacttctatgtatgtaaaa-tacttgaagaaaataaacattgatta 7435016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2032090 - 2032154
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| |||||||||||||| ||| ||||||||| || ||||||    
T  2032090 tataataaaacttatatgtatgtaaaa-tacttgaagaaaattaacgttgattacttttcattatt 2032154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 6108377 - 6108410
Alignment:
Q  172 agaaacatcattaaaagaactcaacacaaatttt 205  Q
    ||||||||| ||||||||||||||||||||||||    
T  6108377 agaaacatcgttaaaagaactcaacacaaatttt 6108410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 22054273 - 22054224
Alignment:
Q  141 atattatattttcatatgttgggatattgaaagaaacatcattaaaagaa 190  Q
    ||||||| ||||||||||||||||||| || |  ||||||||||||||||    
T  22054273 atattatgttttcatatgttgggatatcgagaagaacatcattaaaagaa 22054224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 142 - 317
Target Start/End: Complemental strand, 8140 - 7967
Alignment:
Q  142 tattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcat 241  Q
    ||||| |||||||||||||||||| |||| ||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||  | |||||      
T  8140 tattacattttcatatgttgggatgttgagagaaacatcgttaaaagaacccaacacaaattttatctaattttgattaactgaatcac--atctctcgc 8043  T
Q  242 taacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    ||  |||||||||||||||||||  ||| |||| ||  |||||||||||||||| |||||||||||||||||||||    
T  8042 tacgttcatccacaagaagtatactttttagtgtttcatcgagaaacaattctattgatgcatatctaaaattgag 7967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 8262 - 8221
Alignment:
Q  25 aaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  8262 aaaatacttgaagaaaattaacattgattactcttcattatt 8221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 141 - 316
Target Start/End: Complemental strand, 29324322 - 29324146
Alignment:
Q  141 atattatattttcatatgttgggatattgaaagaaacatcattaaaagaac-tcaacacaaattttatctaatgttgattaactgaatcacttacctctc 239  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||| ||  |||||| ||||||||||||||||  ||||||| ||||||||  |||||    
T  29324322 atattatatttacatatgttgggatatcgagagaaacatcattaaaaaaaaatcaacataaattttatctaatgtgtattaacttaatcacttctctctc 29324223  T
Q  240 attaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     ||| ||| ||||||||||| ||||| |||||||||||  ||||||||||||| || ||||||||||||||||||||    
T  29324222 gttacctttatccacaagaaatataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattga 29324146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 45472797 - 45472664
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |  ||||| ||| ||||||||||||||||||||| |||| ||| ||  |    
T  45472797 attaaaagaacccaacacaaattttatctaatgttgattaactgaatcacct--ctctcgttaccttcatccacaagaagtataattttacgtgattcat 45472700  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||| ||||||||||||||||||||    
T  45472699 cgagaaacaattctagtgatgcatatctaaaattga 45472664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 139 - 317
Target Start/End: Original strand, 7629079 - 7629255
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| ||||| ||||||||||||||||  ||||||||||||| ||||| ||||  ||||||||||||| |||||||||||||||||||  | ||||    
T  7629079 ccatattacattttaatatgttgggatattgggagaaacatcattacaagaaatcaatgcaaattttatctattgttgattaactgaatcac--atctct 7629176  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgag 317  Q
    |  |    ||||||||||||||||||| |||||||| ||  |||||||||||||||| |||||||||||||||||||||    
T  7629177 cgctgtggtcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgag 7629255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 40615058 - 40614886
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||   | ||||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||  ||||    
T  40615058 ccatattatattttcatatg---gaatattgagataaacatcattaaaagaacgcaacacaaattttatataatgttgattaattggatcacttctctct 40614962  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||  ||||||||||  ||  ||||||||||||||||  ||||||||||| |||| ||||| ||||||||||||||    
T  40614961 cattactttcatccacagtaa--ataaatttaagtggttcatcgagaaacaactctaatgatgtatatctaaaattga 40614886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 36505020 - 36504885
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||| |  ||||| ||| ||||||||| |||||||| || ||||| |||||  |    
T  36505020 attaaaagaactcaacacaaattttatctaatgttgaatatccgaatcacctctctctcgttatcttcatccataagaagtagaattttaattggttcat 36504921  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||| ||||||||||||||||||||    
T  36504920 cgagaaacaattctagtgatgcatatctaaaattga 36504885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 46979235 - 46979410
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    |||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||| |  ||||    
T  46979235 ccatattacattttcatatgttgcgatatcgagagaaacatcattaaaagaactcaacgcaaattttatgtgatgttgattaactaaatcacct--ctct 46979332  T
Q  239 cattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    |  ||  |||||||||||||||||||| |||||||| ||  ||   ||||||||||| | ||| ||||||||||||||    
T  46979333 cgctacgttcatccacaagaagtataattttaagtgattcatcagtaaacaattctattaatgtatatctaaaattga 46979410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 38489651 - 38489784
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgt 280  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||  |  ||||| |||  ||||||| |||||||||||| |||||||||||  |    
T  38489651 attaaaagaattcaacaccaattttatctaatgttgattaactgaatcaact--ctctcgttactttcatccgcaagaagtataattttaagtggttcat 38489748  T
Q  281 cgagaaacaattctactgatgcatatctaaaattga 316  Q
    |||||||||||| || | ||||||||||||||||||    
T  38489749 cgagaaacaattatagttatgcatatctaaaattga 38489784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 51240858 - 51240985
Alignment:
Q  139 ccatattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctct 238  Q
    ||||||||||||||||||||||||||||| || | ||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||| |    ||    
T  51240858 ccatattatattttcatatgttgggatatcgaga-aaacatcgtaaaaagaactcaacacaaattttatctaatattgattaattgaatcacctcaaact 51240956  T
Q  239 cattaacttcatccacaagaagtataaat 267  Q
    | ||| |||||||||||||||||||||||    
T  51240957 ctttaccttcatccacaagaagtataaat 51240985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 27163964 - 27164086
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaat 291  Q
    ||||||||||||||||  |||||||||||| |||||||| |  ||||| ||| ||||||||| |||||||||||||||||||||||  |||||||| |||    
T  27163964 tcaacacaaattttattcaatgttgattaattgaatcacct--ctctcgttaccttcatccataagaagtataaatttaagtggttcatcgagaaataat 27164061  T
Q  292 tctactgatgcatatctaaaattga 316  Q
    | || ||||||||||||||||||||    
T  27164062 tatattgatgcatatctaaaattga 27164086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 39614930 - 39615063
Alignment:
Q  142 tattatattttcatatgttgggatattgaaagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcat 241  Q
    ||||||||||||||||||||||| |  || | |||||| |||||||||||||| |||||||||||||||| ||||||||| | |||||  || ||||| |    
T  39614930 tattatattttcatatgttgggagaacgagaaaaacattattaaaagaactcatcacaaattttatctaacgttgattaattaaatca--tatctctcgt 39615027  T
Q  242 taacttcatccacaagaagtataaatttaagtggtt 277  Q
    || ||||||||| ||||||||||| ||||| |||||    
T  39615028 taccttcatccataagaagtataattttaattggtt 39615063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 52695505 - 52695638
Alignment:
Q  201 attttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtg--gtttgtcgagaaacaattctactg 298  Q
    ||||||||||||||||||||| ||||||||    ||||||||| |||||||||||||||| |||||||||||||  |||  || ||||| ||||||| ||    
T  52695505 attttatctaatgttgattaattgaatcacccctctctcattaccttcatccacaagaag-ataaatttaagtgtggttcatcaagaaataattctaatg 52695603  T
Q  299 atgcatatctaaaattgagctatacacatttctac 333  Q
    |||||||||||||||||| | |||||||| |||||    
T  52695604 atgcatatctaaaattgaaccatacacatctctac 52695638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 316
Target Start/End: Complemental strand, 32835414 - 32835303
Alignment:
Q  205 tatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcat 304  Q
    |||||||| ||||||||||||||||| || |||| |||| ||| |||||||| |||||||| |||||||||||  | ||| |||||||||| | ||||||    
T  32835414 tatctaatattgattaactgaatcacatatctcttattaccttaatccacaataagtataattttaagtggttcattgagcaacaattctattaatgcat 32835315  T
Q  305 atctaaaattga 316  Q
    ||||||||||||    
T  32835314 atctaaaattga 32835303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 52695336 - 52695400
Alignment:
Q  2 atactaaaactcatatgtgtgtaaaaatacttgaag-aaaataaacattgattactctttattatt 66  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  52695336 atactaaaactcatatgtgtgt-aaaatacttgaagaaaaataagcattgattactctttattatt 52695400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 20178972 - 20179091
Alignment:
Q  192 tcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaat 291  Q
    ||||||||||||||||| ||||||   ||| |||||||| |  ||||| |||  |||||||| ||||| ||||| |||||||||||  || |||||||||    
T  20178972 tcaacacaaattttatccaatgtt---taattgaatcacct--ctctcgttacattcatccataagaaatataattttaagtggttcatcaagaaacaat 20179066  T
Q  292 tctactgatgcatatctaaaattga 316  Q
    || |||||| |||||||||||||||    
T  20179067 tcaactgatacatatctaaaattga 20179091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 17063888 - 17063934
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaat 227  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  17063888 attaaaggaactcaacacaaattttatctaatgttgattaactgaat 17063934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51240707 - 51240771
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||||||    
T  51240707 tatactaaaactcatatgtgtgt-aaaatacttgaagataataagcatttattattctttattatt 51240771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 20619397 - 20619326
Alignment:
Q  245 cttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||||||||| ||||| |||||||||||  |||| ||| |||| |||| ||||||||||||||||||    
T  20619397 cttcatccacaagaaatataattttaagtggttgatcgaaaaataattatacttatgcatatctaaaattga 20619326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20369011 - 20369073
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||||||||||  ||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  20369011 tatactaaaact--tatgtgtataaaa-tacttgaagaaaataagcattgattactctttattatt 20369073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 52204102 - 52204204
Alignment:
Q  235 ctctcattaacttcatccacaagaagtataaatttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattgagctatacacatttctact 334  Q
    ||||| ||| |||||||||||| |||||||| ||||||| |||  ||| ||||||||| |||| || ||||| |||||||||   ||| |||||||||||    
T  52204102 ctctcgttaccttcatccacaataagtataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctact 52204201  T
Q  335 aaa 337  Q
    |||    
T  52204202 aaa 52204204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45472846 - 45472794
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgatta 54  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  45472846 tatattaaaacttatatgtatgtaaaa-tacttgaagaaaataaacattgatta 45472794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 53530625 - 53530701
Alignment:
Q  181 attaaaagaactcaacacaaattttatctaatgttgattaactgaatc-acttacctctcattaacttcatccacaagaa 259  Q
    ||||||||||||||||||||||||| | |||| |||||||| |||||| |||   ||||| ||| |||||||||||||||    
T  53530625 attaaaagaactcaacacaaattttgtttaatattgattaattgaatctact---ctctcgttatcttcatccacaagaa 53530701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 7628936 - 7628993
Alignment:
Q  8 aaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    ||||| |||||| |||||||  ||||||||||||| |||||||||||||||| ||||||    
T  7628936 aaacttatatgtatgtaaaac-acttgaagaaaattaacattgattactcttcattatt 7628993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 35296537 - 35296487
Alignment:
Q  266 atttaagtggtttgtcgagaaacaattctactgatgcatatctaaaattga 316  Q
    ||||||||| ||  ||||||||||||| |||| ||||||||||||||||||    
T  35296537 atttaagtgattcatcgagaaacaattatacttatgcatatctaaaattga 35296487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 21853890 - 21853838
Alignment:
Q  177 catcattaaaagaactcaacacaaattttatctaatgttgattaactgaatca 229  Q
    ||||| ||||||||||| | ||||||||||| ||||||||||| | |||||||    
T  21853890 catcaataaaagaactctaaacaaattttatttaatgttgattgattgaatca 21853838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 6362 - 6225
Alignment:
Q  179 tcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcacttacctctcattaacttcatccacaagaagtataaatttaagtggttt 278  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| |||||| |  ||||| |||  ||  | |||||||||||||| |||||||||||     
T  6362 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcacctcactctcgttacatttgttcacaagaagtataattttaagtggttc 6263  T
Q  279 gtcgagaaacaattctactgatgcatatctaaaattga 316  Q
     || | ||||||||||| | ||||||||||| ||||||    
T  6262 atcaaaaaacaattctagttatgcatatctataattga 6225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38308 - 38372
Alignment:
Q  1 tatactaaaactcatatgtgtgtaaaaatacttgaagaaaataaacattgattactctttattatt 66  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  38308 tatattaaaacttatatgtatgtaaaa-tacttgaagaaaataaacattgattacccttcattatt 38372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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