View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7807_low_17 (Length: 285)
Name: NF7807_low_17
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7807_low_17 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 113 - 266
Target Start/End: Complemental strand, 335997 - 335844
Alignment:
| Q |
113 |
tagcaacacaagaaagttttagtaagtttgattaatagcacgatcaggaataataagatctactattatatataatatcaaagggatttccaaaccaaga |
212 |
Q |
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| T |
335997 |
tagcaacacaagaaagtttttgtaggtttgattaatagcacgatcaggaataataagatctactattatatataatatcaaagggatttccaaaccaaga |
335898 |
T |
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| Q |
213 |
ggaaaatccctcaatgcaccatgtcagtaatgcacaaaatgatcggaaagggat |
266 |
Q |
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| T |
335897 |
ggaaaatccctcaatgcaccatgtcagtaatgcacaaaatgatcggaaagggat |
335844 |
T |
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Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 336107 - 336052
Alignment:
| Q |
3 |
ctaccaaatttttacctcacaaaagcaactatagcctagagccaatctcataacat |
58 |
Q |
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| T |
336107 |
ctaccaaatttttacctcacaaaagaaactatagcctagagccaatctcataacat |
336052 |
T |
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