View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_low_18 (Length: 274)

Name: NF7807_low_18
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_low_18
NF7807_low_18
[»] chr6 (1 HSPs)
chr6 (1-215)||(16872119-16872333)
[»] chr4 (2 HSPs)
chr4 (91-226)||(36286373-36286508)
chr4 (161-219)||(40823616-40823674)
[»] chr7 (6 HSPs)
chr7 (160-213)||(19939357-19939410)
chr7 (160-213)||(19970496-19970549)
chr7 (161-234)||(20243855-20243927)
chr7 (161-220)||(20231783-20231842)
chr7 (161-234)||(20264242-20264314)
chr7 (164-219)||(20005149-20005204)
[»] chr3 (1 HSPs)
chr3 (160-205)||(1091486-1091531)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 16872333 - 16872119
Alignment:
Q  1 atatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcattacgtttgagcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872333 atatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcattacgtttgagcttt 16872234  T
Q  101 aaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattactactagagattgtta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16872233 aaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagcttcggagtattactactagagattgtta 16872134  T
Q  201 gtggaagaagaaaca 215  Q
    |||||||||||||||    
T  16872133 gtggaagaagaaaca 16872119  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 36286373 - 36286508
Alignment:
Q  91 tttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattactacta 190  Q
    ||||| ||||||||| |||| || ||||||||| |||||||||||||||| |||||||||  ||| || |||||||||||||||||||||||||||||||    
T  36286373 tttgacctttaaatgcagtcgctacatatctccagaatacgcaatgcaaggaattgtttccgagcaatgtgatgtctttagctttggagtattactacta 36286472  T
Q  191 gagattgttagtggaagaagaaacacaagtattttt 226  Q
    |||||||||  ||| ||||||||||||||| |||||    
T  36286473 gagattgtttttggtagaagaaacacaagtcttttt 36286508  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 40823674 - 40823616
Alignment:
Q  161 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag 219  Q
    ||||||||||||||||| || ||  ||||||||||| ||||||| ||||||||| ||||    
T  40823674 gatgtctttagctttggtgttttgatactagagattattagtgggagaagaaactcaag 40823616  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 19939357 - 19939410
Alignment:
Q  160 tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa 213  Q
    ||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  19939357 tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa 19939410  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 19970496 - 19970549
Alignment:
Q  160 tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa 213  Q
    ||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  19970496 tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa 19970549  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 20243855 - 20243927
Alignment:
Q  161 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagtattttttgatgatg 234  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||| ||||| |||| ||||||||    
T  20243855 gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagt-ttttatgatgatg 20243927  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 20231783 - 20231842
Alignment:
Q  161 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagt 220  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||| |||||    
T  20231783 gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagt 20231842  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 20264242 - 20264314
Alignment:
Q  161 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagtattttttgatgatg 234  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  || ||||||||| ||||| |||| ||||||||    
T  20264242 gatgtttttagctttggtgtattgctactagagattgttatcgggagaagaaactcaagt-ttttatgatgatg 20264314  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 20005204 - 20005149
Alignment:
Q  164 gtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag 219  Q
    ||||| ||||||||||| || ||| |||||||||||||||||||| ||||| ||||    
T  20005204 gtcttcagctttggagttttgctaatagagattgttagtggaagacgaaactcaag 20005149  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 1091486 - 1091531
Alignment:
Q  160 tgatgtctttagctttggagtattactactagagattgttagtgga 205  Q
    |||||| ||||||||||| |||||| ||||||||||||| ||||||    
T  1091486 tgatgtatttagctttggtgtattattactagagattgtaagtgga 1091531  T

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