View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7807_low_2 (Length: 614)
Name: NF7807_low_2
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7807_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 232 - 603
Target Start/End: Complemental strand, 3237631 - 3237260
Alignment:
| Q |
232 |
atgtgcattctaaattttcaatctgactaaccaaaagaggagctaaagtgctataaattgtgactcattattcttgagcaactactatttgacagtaaaa |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3237631 |
atgtgcattctaaattttcaatctgactaaccaaaagaggagctaaagtgctataaattgtgactcgttattcttgagcaactactatttgacagtaaaa |
3237532 |
T |
|
| Q |
332 |
gaactcattcaacattcaagcctagcataacttctgtgagatgaattttcaaggtgcaaagcaaatgtacagaaatttaaagtatctatgtaagcagtta |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3237531 |
gaactcattcaacattcaagcctagcataacttctgtgagatgaattttcaaggtgcaaagcaaatgtacagaaatttaaagtatctatgtaagcagtta |
3237432 |
T |
|
| Q |
432 |
aaaatcttggattggatatgataacaaagtattccatcattccattctaaacttgtccagactccacagtaaaaagaactatcaaagtgtgtattcacac |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
3237431 |
aaaatcttggattggatatgataacaaagtattccatcattccattctaaacttgtacaaactccacagtaaaaagaactatcaaagtgtgtattcacac |
3237332 |
T |
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| Q |
532 |
aactaattgttcacaagctaaagagttattcatgtctgatgagaccaccctaaactttgcaacacgaaactc |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
3237331 |
aactaattgttcacaagctaaagagttattcatgtctgttgagaccaccctaaactttgcaacaggaaactc |
3237260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 3237890 - 3237674
Alignment:
| Q |
18 |
aaacctaaggctaactttactttacacagtcatcaaaacattgataattgcagttgaagagaatgttaaagttggatagcctaaaggcactcattgtaac |
117 |
Q |
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| T |
3237890 |
aaacctaaggctaactttactttacacagtcatcaaaacattgataattgcagttgaagagaatgttaaagttggatagcctaaaggcactcattgtaac |
3237791 |
T |
|
| Q |
118 |
aacttccacacatgacagatcactgtgaaacatcctacatgagc---nnnnnnnnnnnnnncagtaccatggcatctttgaagtttaaaagagtttcgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3237790 |
aacttccacacatgacagatcactgtgaaacatcctacatgagcaaaaaaaaaaaaaaaaacagtaccatggcatctttgaagtttaaaagagtttcgat |
3237691 |
T |
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| Q |
215 |
ggtagcaatgtcatgtc |
231 |
Q |
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||||||||||||||||| |
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| T |
3237690 |
ggtagcaatgtcatgtc |
3237674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 416
Target Start/End: Original strand, 39930888 - 39931067
Alignment:
| Q |
232 |
atgtgcattctaaattttcaatctgac-taaccaaaagaggagctaaagtgctataaattgtgactcattattcttgagcaactactatttgacagtaaa |
330 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||| |||||| |||| ||||||||| | | |||||||||||| | ||||||| ||||||||| |
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| T |
39930888 |
atgtgcattctaaattttcaataagacatgaccaaagaaggagcaaaagggctataaatcataa----ttattcttgagccattactatt-gacagtaaa |
39930982 |
T |
|
| Q |
331 |
agaactcattcaacattcaa-gcctagcataacttctgtgagatgaa-ttttcaaggtgcaaagcaaatgtacagaaatttaaagtat |
416 |
Q |
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|||||| |||| | ||||| |||||||||||||| || ||||||| ||||| ||||| |||||||||||| || |||||||||||| |
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| T |
39930983 |
-gaactcgttcatctttcaaagcctagcataactt--gttagatgaaattttccaggtggaaagcaaatgtaaaggaatttaaagtat |
39931067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 39930611 - 39930677
Alignment:
| Q |
17 |
aaaacctaaggctaactttactttacacagtcatcaaaacattgataattgcagttgaagagaatgttaaa |
87 |
Q |
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|||||| ||||||||| |||||||||| |||||||| |||||| | ||||||||||||||||||||||| |
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| T |
39930611 |
aaaacccaaggctaaccttactttaca--gtcatcaa--cattgacagttgcagttgaagagaatgttaaa |
39930677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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