View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_low_25 (Length: 233)

Name: NF7807_low_25
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_low_25
NF7807_low_25
[»] chr6 (11 HSPs)
chr6 (17-218)||(31201153-31201354)
chr6 (17-210)||(31189354-31189547)
chr6 (17-210)||(31145296-31145489)
chr6 (17-210)||(31171609-31171802)
chr6 (17-214)||(31224602-31224799)
chr6 (17-214)||(30992579-30992776)
chr6 (17-214)||(30961097-30961294)
chr6 (17-195)||(31229882-31230060)
chr6 (17-204)||(31214333-31214520)
chr6 (29-109)||(30945104-30945184)
chr6 (29-109)||(30955364-30955444)
[»] chr8 (1 HSPs)
chr8 (71-135)||(44035822-44035886)
[»] chr1 (7 HSPs)
chr1 (77-119)||(10906997-10907039)
chr1 (77-119)||(10930880-10930922)
chr1 (77-119)||(10993084-10993126)
chr1 (80-129)||(9125105-9125154)
chr1 (86-119)||(11041252-11041285)
chr1 (80-141)||(49725337-49725398)
chr1 (80-132)||(8861524-8861576)
[»] chr4 (1 HSPs)
chr4 (80-136)||(27696365-27696421)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 31201354 - 31201153
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201354 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 31201255  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttggtagtaa 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201254 aaatggttggagggaggaaaaacattaatgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttggtagtaa 31201155  T
Q  217 tt 218  Q
    ||    
T  31201154 tt 31201153  T

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Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 31189547 - 31189354
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||    
T  31189547 agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg 31189448  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttgg 210  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  31189447 aaatggttggtgggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgg 31189354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 31145489 - 31145296
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |    
T  31145489 agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctag 31145390  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttgg 210  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  31145389 aaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgg 31145296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 31171802 - 31171609
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |    
T  31171802 agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctag 31171703  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttgg 210  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  31171702 aaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgg 31171609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 31224602 - 31224799
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    ||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  31224602 agaggaacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatattgctgg 31224701  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttggtagt 214  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  31224702 aaatggttggagggaggaaaaacattaatgctgatgcaagtcgcacaagtgagatatattttcctcattgggtatacaaaaggcttgagcttgctagt 31224799  T

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Target: chr6; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 30992579 - 30992776
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |    
T  30992579 agagggacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatgttgttag 30992678  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttggtagt 214  Q
    ||||||| || ||  ||||||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  30992679 aaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttgaacttggtagt 30992776  T

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Target: chr6; HSP #7
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 30961097 - 30961294
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    |||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |    
T  30961097 agagggacaatggggtatgtagctcctgaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatgttgttag 30961196  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttggtagt 214  Q
    ||||||| || ||  ||||||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  30961197 aaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttgaacttggtagt 30961294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 31229882 - 31230060
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    |||||||| ||||| ||||||||||| ||  | ||||||| | |||||||| |||||||  ||||||| || |||||||||||||||||||||||||| |    
T  31229882 agagggacaatggggtatgtagctcctgagttatggaatataaattttggatgagtttcgcacaagtctgacgtttatagttatggaatgatgttgctag 31229981  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaa 195  Q
    |||||||||| ||||||||||||||||  || ||||||||||  ||||||||||||||||||||||| |||||||||||    
T  31229982 aaatggttggtgggaggaaaaacattaacgccgatgcaagtcaaacaagtgagatatactttcctcattgggtatacaa 31230060  T

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Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 31214333 - 31214520
Alignment:
Q  17 agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg 116  Q
    ||||| || ||||||||||||||||| ||  ||||||||||| | |||||||| ||||| |||||||| |||||||||||||| |||||||||||| |||    
T  31214333 agaggaacgatgggatatgtagctcctgagttgtggaatagaaactttggaggcgtttcgtacaagtctgatgtttatagttacggaatgatgttgttgg 31214432  T
Q  117 aaatggttggagggaggaaaaacattattgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttga 204  Q
    ||||  | ||||| ||||||||||||| |||  |||||||||  |||||||||| |||||||||| | ||||||||||| ||| ||||    
T  31214433 aaataatcggaggaaggaaaaacattagtgccaatgcaagtcatacaagtgagaaatactttcctgattgggtatacaaaaggtttga 31214520  T

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Target: chr6; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 30945104 - 30945184
Alignment:
Q  29 ggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatg 109  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  30945104 ggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatg 30945184  T

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Target: chr6; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 30955364 - 30955444
Alignment:
Q  29 ggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatg 109  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  30955364 ggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatg 30955444  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 44035822 - 44035886
Alignment:
Q  71 gtttcatacaagtccgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaa 135  Q
    |||||| | ||||| ||||| |||||||| |||||||||||||| ||||||||||| ||| ||||    
T  44035822 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa 44035886  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 10906997 - 10907039
Alignment:
Q  77 tacaagtccgatgtttatagttatggaatgatgttgctggaaa 119  Q
    ||||| || ||||||||||||||||||||||||||||| ||||    
T  10906997 tacaaatcagatgtttatagttatggaatgatgttgcttgaaa 10907039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 10930880 - 10930922
Alignment:
Q  77 tacaagtccgatgtttatagttatggaatgatgttgctggaaa 119  Q
    ||||| || ||||||||||||||||||||||||||||| ||||    
T  10930880 tacaaatcagatgtttatagttatggaatgatgttgcttgaaa 10930922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 10993084 - 10993126
Alignment:
Q  77 tacaagtccgatgtttatagttatggaatgatgttgctggaaa 119  Q
    ||||| || ||||||||||||||||||||||||||||| ||||    
T  10993084 tacaaatcagatgtttatagttatggaatgatgttgcttgaaa 10993126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 9125154 - 9125105
Alignment:
Q  80 aagtccgatgtttatagttatggaatgatgttgctggaaatggttggagg 129  Q
    ||||| ||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  9125154 aagtctgatatttatagttatgggatgttgttgctggaattggttggagg 9125105  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 11041252 - 11041285
Alignment:
Q  86 gatgtttatagttatggaatgatgttgctggaaa 119  Q
    ||||||||||||||||||||||||||||| ||||    
T  11041252 gatgtttatagttatggaatgatgttgcttgaaa 11041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 49725337 - 49725398
Alignment:
Q  80 aagtccgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaaaaacat 141  Q
    ||||| |||||||| ||||||||||||||| |  |||||||||||||  |||| ||||||||    
T  49725337 aagtcagatgtttacagttatggaatgatggtcatggaaatggttgggaggagaaaaaacat 49725398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 8861576 - 8861524
Alignment:
Q  80 aagtccgatgtttatagttatggaatgatgttgctggaaatggttggagggag 132  Q
    ||||| ||| |||| ||||| |||||| ||||||| |||||||||||||||||    
T  8861576 aagtcagatatttacagttacggaatgttgttgctagaaatggttggagggag 8861524  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 27696365 - 27696421
Alignment:
Q  80 aagtccgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaaa 136  Q
    ||||| ||||||||||||||||| ||| || | || |||||||||||||| ||||||    
T  27696365 aagtcagatgtttatagttatgggatgctgcttcttgaaatggttggaggaaggaaa 27696421  T

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