View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7807_low_30 (Length: 202)
Name: NF7807_low_30
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7807_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 11601978 - 11602090
Alignment:
| Q |
16 |
agaagtaagtcacatgcaaacaaacaaattgaggcatctctctatataatgagatgagactgagagtgagtcagtgtaaaagtgctatacccgttttcag |
115 |
Q |
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| T |
11601978 |
agaagtaagtcacatgcaaacaaacaaattgaggcatctctctatataatgagatgagactgagagtgagtcagtgtaaaagtgctatacccgttttcag |
11602077 |
T |
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| Q |
116 |
taagctctctcac |
128 |
Q |
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| T |
11602078 |
taagctctctcac |
11602090 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 11602120 - 11602149
Alignment:
| Q |
158 |
gcacgcgcctttggatgagtcaaattttgt |
187 |
Q |
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| T |
11602120 |
gcacgcgcctttggatgagtcaaattttgt |
11602149 |
T |
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