View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7807_low_4 (Length: 486)
Name: NF7807_low_4
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7807_low_4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 1743337 - 1743805
Alignment:
| Q |
18 |
cattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctgc |
117 |
Q |
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| T |
1743337 |
cattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagagatttatcagtgatcaagtgattaccagaaagatcgatcttgc |
1743436 |
T |
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| Q |
118 |
gcagattctcaagcatggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaaca |
217 |
Q |
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| T |
1743437 |
acagattctcaagcatggaagacagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagca |
1743536 |
T |
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| Q |
218 |
ataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatcca |
317 |
Q |
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| T |
1743537 |
ataagctatcactaccagatggctatcgcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatcca |
1743636 |
T |
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| Q |
318 |
tcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagt |
417 |
Q |
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| T |
1743637 |
tcaacaggaagtgttctttggttggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagt |
1743736 |
T |
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| Q |
418 |
gactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtggaat |
486 |
Q |
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| T |
1743737 |
gactaaaatctatggctttgagccttaaaaatctcgagagtagccgagaaaggaatagaatagtggaat |
1743805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 2007046 - 2006580
Alignment:
| Q |
17 |
acattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctg |
116 |
Q |
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| T |
2007046 |
acattggaagaataaaatttcttccagtgatctacagttctggcatagagacaaaagggatttatcggtggttaagtgattaccagaaagatcaattttg |
2006947 |
T |
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| Q |
117 |
cgcagattctcaagcatggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaac |
216 |
Q |
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| T |
2006946 |
cgcagattctcgagcatggaagattaccttattaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagc |
2006847 |
T |
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| Q |
217 |
aataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatcc |
316 |
Q |
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| T |
2006846 |
aataagctatcactaccagatggctatcgcaaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctcgcaatcc |
2006747 |
T |
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| Q |
317 |
atcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaag |
416 |
Q |
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||||||||||| |||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||| | | |||| ||||||||||||||| |
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| T |
2006746 |
atcaacaggaactgttctctggttggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatgaagcaagccttcaagttcaccattgaag |
2006647 |
T |
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| Q |
417 |
tgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtgg |
483 |
Q |
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| T |
2006646 |
tggctaaaatctaagactttgagccttaaaaatcccaagagtagccgaggaaggaatggaacagtgg |
2006580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 439
Target Start/End: Complemental strand, 1498419 - 1498323
Alignment:
| Q |
343 |
aaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgag |
439 |
Q |
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||||||||| ||||| |||||||| | ||||| | ||||||||||||| | | ||||||||| ||| ||||||| |||| |||||||||||||| |
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| T |
1498419 |
aaagattaaccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctatgactttgag |
1498323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
304 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
344 |
Q |
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| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 44577603 - 44577538
Alignment:
| Q |
353 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
418 |
Q |
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| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
44577538 |
T |
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