View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_low_6 (Length: 413)

Name: NF7807_low_6
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_low_6
NF7807_low_6
[»] chr5 (7 HSPs)
chr5 (2-394)||(41079471-41079864)
chr5 (223-349)||(41101307-41101432)
chr5 (198-259)||(15596399-15596460)
chr5 (178-210)||(41090959-41090991)
chr5 (77-149)||(41101200-41101272)
chr5 (328-359)||(41091088-41091119)
chr5 (27-62)||(41101136-41101171)
[»] chr2 (2 HSPs)
chr2 (199-293)||(33914028-33914122)
chr2 (302-368)||(6914685-6914750)
[»] chr7 (1 HSPs)
chr7 (198-293)||(3660374-3660468)
[»] chr4 (1 HSPs)
chr4 (205-261)||(27048838-27048894)


Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 2 - 394
Target Start/End: Original strand, 41079471 - 41079864
Alignment:
Q  2 aatactatgaattgggaacacgagagaaaatgatgattgatacatttcatgtaatcacttggttgcaa-caagtgttgagaatattatgcctagatatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41079471 aatactatgaattgggaacacgagagaaaatgatgattgatacatttcatgtaatcacttggttgcaaacaagtgttgagaatattatgcctagatatcg 41079570  T
Q  101 ttttttaggtttaggtttagatataaaataagatagcattatagatagaattaattatgaagtgatggtgtaaattttttgcatccaataaaatcatttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41079571 ttttttaggtttaggtttagatataaaataagatagcattatagatagaattaattatgaagtgatggtgtaaattttgtgcatccaataaaatcatttt 41079670  T
Q  201 taggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatctttaaag 300  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41079671 taggaactaacccaaattggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatccttaaag 41079770  T
Q  301 gtatcattaaaatttaaatttgaatattttgttagagtatttttaggatttgttagtttgtttcttatttaactttgtgttaaccctccggtta 394  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  41079771 gtatcattaagatttaaatttgaatattttgttagagtatttttaggatttgttagtttgtttcttatttaattttgtgttaactctccggtta 41079864  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 349
Target Start/End: Original strand, 41101307 - 41101432
Alignment:
Q  223 gcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatctttaaaggtatcattaaaatttaaatttg 322  Q
    ||||||||  || ||||| |||||||  |||||||||| ||||||||  |||  ||||||| |||||||||  ||||| ||||||||| |||||||||||    
T  41101307 gcatcatactgtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgtatatgaattaaatccctaaagatatcattaagatttaaatttg 41101406  T
Q  323 aatattttgttagagtatttttaggat 349  Q
    |||| |||||||| |||||| ||||||    
T  41101407 aata-tttgttagtgtatttataggat 41101432  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 15596460 - 15596399
Alignment:
Q  198 ttttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaa 259  Q
    ||||||||||||||| |||||| ||||||||||||||||| || || |||| ||||||||||    
T  15596460 ttttaggaactaacctaaaaagctggcatcataaagtgatgtgattggatgcatgtgtaaaa 15596399  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 41090959 - 41090991
Alignment:
Q  178 tttgcatccaataaaatcatttttaggaactaa 210  Q
    |||||||||||||||||||||||||||||||||    
T  41090959 tttgcatccaataaaatcatttttaggaactaa 41090991  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 41101200 - 41101272
Alignment:
Q  77 tgagaatattatgcctagatatcgttttttaggtttaggtttagatataaaataagatagcattatagataga 149  Q
    ||||||||||| ||||| ||||||||||| || ||||||||||||| || | ||| ||| | |||||||||||    
T  41101200 tgagaatattaagcctaaatatcgtttttaagatttaggtttagatttatagtaaaatatcgttatagataga 41101272  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 359
Target Start/End: Original strand, 41091088 - 41091119
Alignment:
Q  328 tttgttagagtatttttaggatttgttagttt 359  Q
    ||||||||||||||||||||||||||||||||    
T  41091088 tttgttagagtatttttaggatttgttagttt 41091119  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 41101136 - 41101171
Alignment:
Q  27 gaaaatgatgattgatacatttcatgtaatcacttg 62  Q
    |||||||||||||||| |||||||||||||||||||    
T  41101136 gaaaatgatgattgatccatttcatgtaatcacttg 41101171  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 33914028 - 33914122
Alignment:
Q  199 tttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatc 293  Q
    |||||||||||||| ||||| ||| |||||| |||||||||| || |||| ||||| |||||  ||||||   ||| ||||||| ||||||||||    
T  33914028 tttaggaactaacctaaaaatgtgacatcatgaagtgatttgattggatgcatgtgcaaaaatatttcacgatgtccgtgtatagaaattaaatc 33914122  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 6914685 - 6914750
Alignment:
Q  302 tatcattaaaatttaaatttgaatattttgttagagtatttttaggatttgttagtttgtttcttat 368  Q
    |||||||| |||||||||||||||| ||||||  ||| ||||||  ||||||||||||||| |||||    
T  6914685 tatcattagaatttaaatttgaata-tttgttgaagtgtttttacaatttgttagtttgttccttat 6914750  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 3660468 - 3660374
Alignment:
Q  198 ttttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatc 293  Q
    ||||||||||||||| |||||| |||||||||  ||||||||| ||  ||| ||||||| | | |||| |||| ||| ||||||||||||| ||||    
T  3660468 ttttaggaactaacctaaaaag-tggcatcattgagtgatttgattgaatgcatgtgtatagaagttttacattgtcagtgtatataaattgaatc 3660374  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 27048838 - 27048894
Alignment:
Q  205 aactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaac 261  Q
    |||||||| ||||||||||||||||||||| ||||| || |||   |||||||||||    
T  27048838 aactaacctaaaaaggtggcatcataaagtaatttgattggattcgtgtgtaaaaac 27048894  T

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