View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7807_low_7 (Length: 412)
Name: NF7807_low_7
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7807_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 30219311 - 30219670
Alignment:
| Q |
13 |
aatatgaaccaaaaccacgatagacgctttatg------accacctccaattaattttcaactttgcctttaaagagaacattattactgcgctccatcc |
106 |
Q |
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| T |
30219311 |
aatatgaaccaaaaccaccatagacgctttatgcgatcgaccacctccaaataatttacaactttgcctttaaagagaacattattactgcgctccatcc |
30219410 |
T |
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| Q |
107 |
aaatatataatacggaagtaatgtacatgattctatggccttgctcgagcttcaaattccaaatcatacttttcatcaaaaagtaaaagtaagaactaag |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219411 |
aaatatataatacggaagtaatgtacatcattctatggtcttgctcgagcttcaaattccaaatcatacttttcatcaaaaagtaaaagtaagaactaag |
30219510 |
T |
|
| Q |
207 |
aagtgtacaatcagcatttatgtatcaatcaaaatcaaggtagctatgccgtaactatataaaaatgaaattgctactagtgtatatattaatatcaagg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219511 |
aagtgtacaatcagcatttatgtatcaatcaaaatcaaggtagctatgccgtaactatataaaaatgaaattgctactagtgtatatattaatatcaagg |
30219610 |
T |
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| Q |
307 |
ggacttggctttttgtagccaagtgtcagatttcgaagtaccaaatataaaaatctcttg |
366 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30219611 |
ggacttggctttttgtagccaagtgtcagattttgaagtaccaaatataaaaatctcttg |
30219670 |
T |
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