View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7807_low_8 (Length: 403)

Name: NF7807_low_8
Description: NF7807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7807_low_8
NF7807_low_8
[»] chr4 (6 HSPs)
chr4 (54-254)||(35021247-35021446)
chr4 (246-390)||(35020672-35020816)
chr4 (1-42)||(27740768-27740809)
chr4 (330-390)||(1558293-1558353)
chr4 (1-45)||(17948125-17948169)
chr4 (1-41)||(43374265-43374305)
[»] chr2 (2 HSPs)
chr2 (121-219)||(37905481-37905579)
chr2 (1-44)||(29133474-29133517)
[»] chr1 (5 HSPs)
chr1 (1-45)||(49130217-49130260)
chr1 (1-44)||(5869792-5869835)
chr1 (307-373)||(8455471-8455537)
chr1 (1-41)||(23524852-23524892)
chr1 (330-390)||(48769986-48770046)
[»] chr7 (1 HSPs)
chr7 (1-44)||(580916-580959)
[»] chr5 (5 HSPs)
chr5 (1-43)||(11637563-11637605)
chr5 (1-45)||(1808582-1808626)
chr5 (1-45)||(3156562-3156606)
chr5 (330-390)||(18979958-18980018)
chr5 (1-45)||(39980536-39980580)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-45)||(161169-161213)
[»] chr6 (3 HSPs)
chr6 (1-45)||(2445327-2445371)
chr6 (109-149)||(3974307-3974347)
chr6 (1-44)||(29398637-29398681)
[»] chr3 (1 HSPs)
chr3 (4-44)||(7757114-7757154)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 54 - 254
Target Start/End: Complemental strand, 35021446 - 35021247
Alignment:
Q  54 taatttgacttagttaaataaagttcgttatgtatcttccacaactatttcattatgaatagtgttaaatatcacgagaacatgtctcacgaatccttat 153  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| |    
T  35021446 taatttgacttagttaaataaagttcgttaagtatcttccacaactatttcattatgaataatgttaaatatcacgagaacttgtctcaggaatccttgt 35021347  T
Q  154 cgactgaacagcgcaacatgccccnnnnnnncactaaatccgaattaaagtgacacaacagattttatatcctttttaatgtaaaaaggatattcttgaa 253  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  35021346 cgactgaacagcgcaacatgcccc-ttttaccactaaatccgaattaaagtgacacaacagattttataccctttttaacgtaaaaaggatattattgaa 35021248  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 246 - 390
Target Start/End: Complemental strand, 35020816 - 35020672
Alignment:
Q  246 ttcttgaaatatcaagaaaagaaatttcgcttgatatagaagccttgtttttcttcttctttttggatggttgctaaatttatattagtgggatatattt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  35020816 ttcttgaaatatcaagaaaagaaatttcgcttgatatagaagcattgtttttcttcttctttttggatgattgctaaatttatattagtggaatatattt 35020717  T
Q  346 cattgttttgatgtttggtctttttcttttgttgggttagatttg 390  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||    
T  35020716 cattgttttaatgtttggtctttttcttctgtagggttagatttg 35020672  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27740768 - 27740809
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccacc 42  Q
    ||||||||||||||||| || ||||||||||| |||||||||    
T  27740768 tgcataaaatatgcaaggttcggagttcgaactccgaccacc 27740809  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 1558353 - 1558293
Alignment:
Q  330 ttagtgggatatatttcattgttttgatgtttggtctttttcttttgttgggttagatttg 390  Q
    |||||||||||  ||| ||||||| ||| |||||||||| |||||||| | ||||||||||    
T  1558353 ttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttg 1558293  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17948169 - 17948125
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccacc 45  Q
    ||||||||||||| ||| || ||||||| ||||||||||||||||    
T  17948169 tgcataaaatatgtaaggttcggagttcaaaccccgaccaccacc 17948125  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43374305 - 43374265
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccac 41  Q
    ||||||||||||||||| || ||||||| ||||||||||||    
T  43374305 tgcataaaatatgcaaggttcggagttcaaaccccgaccac 43374265  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 37905481 - 37905579
Alignment:
Q  121 aatatcacgagaacatgtctcacgaatccttatcgactgaacagcgcaacatgccccnnnnnnncactaaatccgaattaaagtgacacaacagatttt 219  Q
    ||||||||||||||||||||| |||||||||  |||||||||| | || ||||| |        |||||| |||| |||||||||||||||||| ||||    
T  37905481 aatatcacgagaacatgtctcgcgaatccttcccgactgaacaccacatcatgctcattttttccactaattccggattaaagtgacacaacagttttt 37905579  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29133517 - 29133474
Alignment:
Q  1 tgcataaaatatgcaagat-taggagttcgaaccccgaccaccac 44  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  29133517 tgcataaaatatgcaagatctagg-gttcgaaccccgaccaccac 29133474  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49130260 - 49130217
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccacc 45  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  49130260 tgcataaaatatgcaagattcg-agttcgaaccccgaccaccacc 49130217  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5869792 - 5869835
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccac 44  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||    
T  5869792 tgcataatatatgcaagattcggagttcaaaccccgaccaccac 5869835  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 8455537 - 8455471
Alignment:
Q  307 tttggatggttgctaaatttatattagtgggatatatttcattgttttgatgtttggtctttttctt 373  Q
    |||||||||||| ||| | ||| ||||||||||| ||||  |||||||||| |||||||||| ||||    
T  8455537 tttggatggttgataattctatcttagtgggatagatttgtttgttttgatatttggtctttctctt 8455471  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23524852 - 23524892
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccac 41  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  23524852 tgcataaaatatgaaagattcggagttcaaaccccgaccac 23524892  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 48769986 - 48770046
Alignment:
Q  330 ttagtgggatatatttcattgttttgatgtttggtctttttcttttgttgggttagatttg 390  Q
    |||||||||||| ||| ||||||| ||| |||| ||||| |||||||| | ||||||||||    
T  48769986 ttagtgggatatttttgattgtttagatatttgatctttctcttttgtagtgttagatttg 48770046  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 580959 - 580916
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccac 44  Q
    |||||||||||||||||||  || ||||||||||||||||||||    
T  580959 tgcataaaatatgcaagatccggcgttcgaaccccgaccaccac 580916  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11637605 - 11637563
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccacca 43  Q
    ||||||||||||||||| || || |||||||||||||||||||    
T  11637605 tgcataaaatatgcaaggttcggggttcgaaccccgaccacca 11637563  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1808626 - 1808582
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccacc 45  Q
    ||||||||||||||||| || ||| ||||| ||||||||||||||    
T  1808626 tgcataaaatatgcaaggttcggaattcgatccccgaccaccacc 1808582  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3156562 - 3156606
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccacc 45  Q
    ||||||||||||| |||||| || ||||||| |||||||||||||    
T  3156562 tgcataaaatatgtaagatttggggttcgaatcccgaccaccacc 3156606  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 18979958 - 18980018
Alignment:
Q  330 ttagtgggatatatttcattgttttgatgtttggtctttttcttttgttgggttagatttg 390  Q
    |||||||||||  ||| ||||||| ||| |||||||||| |||||||| | ||||||||||    
T  18979958 ttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttg 18980018  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39980536 - 39980580
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccacc 45  Q
    ||||||||||||||||| |  ||||||| ||||||||||||||||    
T  39980536 tgcataaaatatgcaaggtccggagttcaaaccccgaccaccacc 39980580  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 161169 - 161213
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccacc 45  Q
    ||||||||||||||||| || || |||| ||||||||||||||||    
T  161169 tgcataaaatatgcaaggttcggggttcaaaccccgaccaccacc 161213  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2445327 - 2445371
Alignment:
Q  1 tgcataaaatatgcaagattaggagttcgaaccccgaccaccacc 45  Q
    ||||||| |||| ||||||| || |||||||||||||||||||||    
T  2445327 tgcataatatatacaagattcggggttcgaaccccgaccaccacc 2445371  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 3974347 - 3974307
Alignment:
Q  109 tgaatagtgttaaatatcacgagaacatgtctcacgaatcc 149  Q
    |||||| |||||||||||||||||| ||||||| |||||||    
T  3974347 tgaataatgttaaatatcacgagaaaatgtctcgcgaatcc 3974307  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29398637 - 29398681
Alignment:
Q  1 tgcataaa-atatgcaagattaggagttcgaaccccgaccaccac 44  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  29398637 tgcataaacatatgcaagatttggggttcgaaccccgaccaccac 29398681  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 7757114 - 7757154
Alignment:
Q  4 ataaaatatgcaagattaggagttcgaaccccgaccaccac 44  Q
    |||||||||||||| ||  ||||||||||||||||||||||    
T  7757114 ataaaatatgcaaggttcagagttcgaaccccgaccaccac 7757154  T

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