View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7808_high_1 (Length: 398)

Name: NF7808_high_1
Description: NF7808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7808_high_1
NF7808_high_1
[»] chr7 (11 HSPs)
chr7 (19-267)||(3653654-3653906)
chr7 (276-387)||(3654016-3654131)
chr7 (38-267)||(3675287-3675508)
chr7 (164-267)||(3706342-3706447)
chr7 (164-266)||(3651090-3651194)
chr7 (313-385)||(3651299-3651373)
chr7 (19-74)||(3679033-3679088)
chr7 (324-387)||(3701289-3701355)
chr7 (278-387)||(3675059-3675179)
chr7 (19-53)||(3685817-3685851)
chr7 (19-63)||(3693573-3693618)
[»] chr4 (1 HSPs)
chr4 (288-389)||(24300459-24300572)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 3653654 - 3653906
Alignment:
Q  19 ggaactgttcaaatcttggccaagaggagaggccaagaactcctcccactttctatgtgtctcacttaaagggagccgtttcgacaacacaagtaaaact 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  3653654 ggaactgttcaaatcttggccaagaggagaggccaagaactcctcccattttctgtgtgtctcacttaatgggagccgtttcgacaacacaagtaaaact 3653753  T
Q  119 acctattttgtgtctaa--ctcgagtccaatattaaggttaatattgaaagctttaaacctcaatgtgaaactt--agtactgtgttatagttaaagaag 214  Q
     |||| |||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||  ||||||  || | |||||||||||| | | |     
T  3653754 gcctagtttgtgtctaactctcgagtccaatattaaggttaatattaaaagccttaaacctcaatgaaaaacttagaggagtgtgttatagttgatggaa 3653853  T
Q  215 gcttgtttttgtaactcagactatgtactattacaaatgtccctttcttgatt 267  Q
    |||||||||||||||| |||| ||||||||||||||| |||| ||||||||||    
T  3653854 gcttgtttttgtaacttagaccatgtactattacaaaggtccatttcttgatt 3653906  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 276 - 387
Target Start/End: Original strand, 3654016 - 3654131
Alignment:
Q  276 gaaagtgtaaaaaatagatcaaaaactaatacacaag-cacatacaatgttgtctgccaaacatgtagcaaaatcgcagactc---cttaaaataacaag 371  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||| ||||||||   ||||||||||||||    
T  3654016 gaaagtgcaaaaaatagatcaaaaactaatacacaagtcacatacaatgttttctcccaaacatgtaacaaaatagcagactcctgcttaaaataacaag 3654115  T
Q  372 atcagtccaagcacca 387  Q
    ||||||||||||||||    
T  3654116 atcagtccaagcacca 3654131  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 3675508 - 3675287
Alignment:
Q  38 ccaagaggagaggccaagaactcctcccactttctatgtgtctcacttaaagggagccgtttcgacaacacaagtaaaactacctattttgtgtctaa-- 135  Q
    ||||||||||||||||||||||||||||| |||| ||||  ||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||      
T  3675508 ccaagaggagaggccaagaactcctcccattttccatgt--ctcgcttaaagggagccatttcgacaacacaagtgaaactacctagtttgtgtctaact 3675411  T
Q  136 ctcgagtccaatattaaggttaatattgaaagctttaaacctcaatgtgaaacttagtactgtgt----tatagttaaagaaggcttgtttttgtaactc 231  Q
    |||||||||          |  || || ||||| ||||||||| ||| |||||||   | |||||    ||||||| ||| |||||||||||| |||||     
T  3675410 ctcgagtcc----------tcgatgttaaaagccttaaacctctatgagaaactt--cagtgtgttatatatagttgaaggaggcttgtttttctaactt 3675323  T
Q  232 agactatgtactattacaaatgtccctttcttgatt 267  Q
    |||||||||||||||||||| |||| ||||||||||    
T  3675322 agactatgtactattacaaaggtccatttcttgatt 3675287  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 3706447 - 3706342
Alignment:
Q  164 aaagctttaaacctcaatgtgaaacttagt--actgtgttatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttc 261  Q
    ||||| ||||||||||||| |||||||||   | |||||||||||  | | |||||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  3706447 aaagccttaaacctcaatgagaaacttagacgagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtactactacaaaggtccatttc 3706348  T
Q  262 ttgatt 267  Q
    ||||||    
T  3706347 ttgatt 3706342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 3651090 - 3651194
Alignment:
Q  164 aaagctttaaacctcaatgtgaaacttagt--actgtgttatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttc 261  Q
    ||||| ||||||||||||| |||||||||   | |||||||||||  | | |||||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  3651090 aaagccttaaacctcaatgagaaacttagacgagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtactactacaaaggtccatttc 3651189  T
Q  262 ttgat 266  Q
    |||||    
T  3651190 ttgat 3651194  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 3651299 - 3651373
Alignment:
Q  313 cacatacaatgttgtctgccaaacatgtagcaaaatcgc--agactccttaaaataacaagatcagtccaagcac 385  Q
    ||||||||| |||||||||||||||||| ||||||| ||  | ||||||||||||| ||||||||||||||||||    
T  3651299 cacatacaacgttgtctgccaaacatgttgcaaaatagcaaaaactccttaaaatagcaagatcagtccaagcac 3651373  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 3679088 - 3679033
Alignment:
Q  19 ggaactgttcaaatcttggccaagaggagaggccaagaactcctcccactttctat 74  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  3679088 ggaactgttcaaatcttggccaagaagagagaccaagaactcctcccattttctat 3679033  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 3701355 - 3701289
Alignment:
Q  324 ttgtctgccaaacatgtagcaaaatcgcagactcct---taaaataacaagatcagtccaagcacca 387  Q
    |||| |||||||||||||||||| | ||| ||||||   ||||||||||||||||||||||||||||    
T  3701355 ttgtgtgccaaacatgtagcaaagtagcatactcctccttaaaataacaagatcagtccaagcacca 3701289  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 3675179 - 3675059
Alignment:
Q  278 aagtgtaaaaaatagatcaaaaactaatacac-aagcacatacaatgttgtctgccaaa----catgtagcaaaatcgc---agac---tccttaaaata 366  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||| | | |||||||    ||||||||||||| ||   ||||   |||| ||||||    
T  3675179 aagtgaaaaaaatagatcaaaaactaataaacaaatcacatacaatgctatttgccaaacatgcatgtagcaaaatagcaaaagactcttcctaaaaata 3675080  T
Q  367 acaagatcagtccaagcacca 387  Q
    |||||||||||||||||||||    
T  3675079 acaagatcagtccaagcacca 3675059  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 3685851 - 3685817
Alignment:
Q  19 ggaactgttcaaatcttggccaagaggagaggcca 53  Q
    |||||||||||||||||||||||||||||||||||    
T  3685851 ggaactgttcaaatcttggccaagaggagaggcca 3685817  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 3693618 - 3693573
Alignment:
Q  19 ggaactgttcaaatctt-ggccaagaggagaggccaagaactcctc 63  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  3693618 ggaactgttcacatctttggccaagaggagaggccaagaacccctc 3693573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 24300572 - 24300459
Alignment:
Q  288 aatagatcaaaaactaatacacaagcaca---------tacaatgttgtctgccaaacatgtagcaaaatcgcagactcc---ttaaaataacaagatca 375  Q
    ||||||||||||||||||||||||| |||         ||||||| | | |||||||||||||||||||| ||| |||||   |||||||||||||||||    
T  24300572 aatagatcaaaaactaatacacaagtacacaagtcaaatacaatgctatttgccaaacatgtagcaaaatagcacactcccccttaaaataacaagatca 24300473  T
Q  376 gtccaagcaccacc 389  Q
      ||||||||||||    
T  24300472 aaccaagcaccacc 24300459  T

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