View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7808_high_2 (Length: 397)

Name: NF7808_high_2
Description: NF7808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7808_high_2
NF7808_high_2
[»] scaffold0110 (4 HSPs)
scaffold0110 (20-386)||(13239-13607)
scaffold0110 (20-386)||(20976-21344)
scaffold0110 (20-176)||(30096-30254)
scaffold0110 (177-302)||(30224-30349)
[»] chr8 (6 HSPs)
chr8 (298-383)||(5423308-5423393)
chr8 (301-380)||(1581284-1581363)
chr8 (303-383)||(12532582-12532662)
chr8 (301-383)||(12796412-12796494)
chr8 (299-383)||(41437968-41438051)
chr8 (293-377)||(45251352-45251436)
[»] chr4 (10 HSPs)
chr4 (297-383)||(31768038-31768124)
chr4 (301-383)||(51175280-51175362)
chr4 (301-383)||(44992018-44992099)
chr4 (301-383)||(4711248-4711328)
chr4 (301-383)||(12191279-12191360)
chr4 (323-383)||(40445546-40445606)
chr4 (325-385)||(32409313-32409373)
chr4 (298-382)||(39718868-39718952)
chr4 (323-383)||(45832340-45832400)
chr4 (322-383)||(38068284-38068345)
[»] chr3 (9 HSPs)
chr3 (299-382)||(28131092-28131175)
chr3 (299-383)||(19610900-19610984)
chr3 (311-385)||(32551926-32552000)
chr3 (299-383)||(1152076-1152160)
chr3 (305-380)||(1560028-1560103)
chr3 (305-383)||(3935996-3936073)
chr3 (323-383)||(10183041-10183100)
chr3 (303-383)||(33428592-33428672)
chr3 (303-383)||(55222156-55222235)
[»] chr1 (11 HSPs)
chr1 (301-383)||(5939623-5939705)
chr1 (301-385)||(45370715-45370799)
chr1 (301-383)||(30627391-30627472)
chr1 (324-383)||(35719090-35719149)
chr1 (299-383)||(1834750-1834834)
chr1 (299-383)||(12705449-12705533)
chr1 (306-384)||(47677142-47677220)
chr1 (298-339)||(27163333-27163374)
chr1 (329-383)||(26992026-26992080)
chr1 (334-383)||(30796562-30796611)
chr1 (323-383)||(15456700-15456759)
[»] chr7 (7 HSPs)
chr7 (301-383)||(583824-583906)
chr7 (301-382)||(8515787-8515869)
chr7 (301-383)||(48293850-48293932)
chr7 (323-383)||(48557738-48557798)
chr7 (301-382)||(8488978-8489060)
chr7 (301-377)||(17503457-17503534)
chr7 (301-377)||(17549680-17549757)
[»] chr6 (2 HSPs)
chr6 (301-383)||(6811284-6811366)
chr6 (301-381)||(17096581-17096661)
[»] chr2 (5 HSPs)
chr2 (296-382)||(37847195-37847281)
chr2 (323-383)||(28967837-28967897)
chr2 (301-382)||(14332596-14332676)
chr2 (304-383)||(21848696-21848775)
chr2 (312-382)||(36749735-36749805)
[»] chr5 (2 HSPs)
chr5 (305-384)||(564979-565057)
chr5 (297-342)||(2552221-2552266)
[»] scaffold0086 (1 HSPs)
scaffold0086 (301-383)||(33684-33766)


Alignment Details
Target: scaffold0110 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 13239 - 13607
Alignment:
Q  20 agccttatattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13239 agccttatattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttt 13338  T
Q  120 tagattaagtgt--gtttagattatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgcca 217  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13339 tagattaagtgtgtgtttagattatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgcca 13438  T
Q  218 aaaactacatttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatggg 317  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13439 aaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatggg 13538  T
Q  318 agtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctct 386  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13539 agttccttacttaacaaggaccgcttcccattaatgacactccattgaaggaagaaaaaatgagtctct 13607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 20976 - 21344
Alignment:
Q  20 agccttatattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20976 agccttatattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttt 21075  T
Q  120 tagattaagtgt--gtttagattatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgcca 217  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21076 tagattaagtgtgtgtttagattatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgcca 21175  T
Q  218 aaaactacatttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatggg 317  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21176 aaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatggg 21275  T
Q  318 agtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctct 386  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21276 agttccttacttaacaaggaccgcttcccattaatgacactccattgaaggaagaaaaaatgagtctct 21344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 30096 - 30254
Alignment:
Q  20 agccttatattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttt 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  30096 agccttatactgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgattcgtttt 30195  T
Q  120 tagattaag--tgtgtttagattatccgtgagtttgctagaatcacgatgtgtcatagt 176  Q
    |||||||||  ||||||| ||||| | |||||||||  ||| ||| |||||| ||||||    
T  30196 tagattaagtatgtgtttggattagcagtgagtttgtcagagtcatgatgtgccatagt 30254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 30224 - 30349
Alignment:
Q  177 tgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact 276  Q
    ||||||||||| | ||| ||||||||||| |||||| | ||||||||||| || | |||||||||||| ||||| |||||||||||||||||||||||||    
T  30224 tgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgatttcgtcaaact 30323  T
Q  277 cgatttgattttcatcatgcactaag 302  Q
     ||| ||||| | || ||||||||||    
T  30324 tgatgtgattcttattatgcactaag 30349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 5423308 - 5423393
Alignment:
Q  298 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||||||||||| | | |||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||    
T  5423308 ctaagagcatctccaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtc 5423393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 1581284 - 1581363
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatga 380  Q
    ||||||||||||||||  | | |||| ||||||||||||||||| | |||| ||| || ||||| |||||||||||||||    
T  1581284 agagcatctccaatggagggtccttatttaacaaggaccacttctcgttaaggactcttcattggaggaagaaaaaatga 1581363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 12532662 - 12532582
Alignment:
Q  303 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||| |||||||  | |||| |||| ||||| | || |||||||| ||| || ||||||||||||||||||||||||    
T  12532662 agcatctctaatgggaagtccttatttaagaaggatcgctccccattaaggacccttcattgaaggaagaaaaaatgagtc 12532582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 12796494 - 12796412
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||| |||| |||| | ||||||||||||||| |||| ||  ||||  || |||||||| |||||||||||| |||||    
T  12796494 agagcatcttcaataggaggtccttacttaacaaggatcactccctgttaaataccctccattggaggaagaaaaaaagagtc 12796412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 41437968 - 41438051
Alignment:
Q  299 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||| ||||||||| | |||| ||||||| ||||||| ||  |||| ||| | |||||| ||||||| ||||||||||    
T  41437968 taagagcatcttcaatgggaggtccttagttaacaaagaccactccctgttaacgac-ccccattggaggaagagaaaatgagtc 41438051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 45251436 - 45251352
Alignment:
Q  293 atgcactaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa 377  Q
    |||| ||||||| ||||| ||||| || ||||||||||||||||  |||| ||| |||| |||  | ||||| ||||||||||||    
T  45251436 atgctctaagagtatctcaaatggaaggttcttacttaacaaggtacactccccgttaaggactttgcattggaggaagaaaaaa 45251352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 31768124 - 31768038
Alignment:
Q  297 actaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||||| |||||| | | |||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||    
T  31768124 actaagagcatctcaaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtc 31768038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 51175280 - 51175362
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| | | |||||||||||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||    
T  51175280 agagcatctccaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtc 51175362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 44992099 - 44992018
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||    
T  44992099 agagcatctccaatgggggtc-cttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtc 44992018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 4711248 - 4711328
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||| | ||  ||| |||| ||||||||||||||||||    
T  4711248 agagcatctccaatgggggtt-cttacttaacaaggaccactccccattgaaga-tctctattggaggaagaaaaaatgagtc 4711328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 12191279 - 12191360
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| ||  |||||||||||||||||| | ||| |||| ||| || ||||||||||||||||||| ||||    
T  12191279 agagcatctccaatgggggtc-cttacttaacaaggaccagtccccgttaaggacccttcattgaaggaagaaaaaattagtc 12191360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 40445546 - 40445606
Alignment:
Q  323 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||||||  ||||||| ||| |||||||| || |||||||||||||||    
T  40445546 cttacttaacaaggaccactctccattaaggaccctccattggagaaagaaaaaatgagtc 40445606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 32409313 - 32409373
Alignment:
Q  325 tacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctc 385  Q
    |||||||||||||||||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  32409313 tacttaacaaggaccactccccgttaaggatcctccattggaggaagaacaaatgagtctc 32409373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 39718868 - 39718952
Alignment:
Q  298 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 382  Q
    |||||| |||||||||| |  | | ||||||||| |||||||||| ||| |||| ||| || ||||| |||||||||||||||||    
T  39718868 ctaagaacatctccaatagagggtccttacttaataaggaccactccccgttaaggactcttcattgcaggaagaaaaaatgagt 39718952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 45832400 - 45832340
Alignment:
Q  323 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||||||||||| ||  |||| ||| |||||||| ||||||||||||| ||||    
T  45832400 cttacttaacaaggaccactcccagttaaggaccctccattggaggaagaaaaaataagtc 45832340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 38068284 - 38068345
Alignment:
Q  322 tcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| ||| ||| ||||  || |||||||| |||||||||||| |||||    
T  38068284 tcttacttaacaaggactactccccgttaagaaccctccattggaggaagaaaaaacgagtc 38068345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 28131092 - 28131175
Alignment:
Q  299 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 382  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| || ||||| ||| | |||||| |||||||||||||||||    
T  28131092 taagagcatctccaatgggaggttcttacttaacaaggatcactccctattaaagaccccccattggaggaagaaaaaatgagt 28131175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 19610900 - 19610984
Alignment:
Q  299 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||||| | | |||| ||||||||||| |||| || |||| ||| |||||||| ||||||||||||||||||    
T  19610900 taagagcatctccaatggggggtccttatttaacaaggactactttccgttaaggaccctccattggaggaagaaaaaatgagtc 19610984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 32551926 - 32552000
Alignment:
Q  311 caatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctc 385  Q
    ||||||||| | ||||||||||||||||||||  |  |||| ||| |||||||| ||||||||||||||| ||||    
T  32551926 caatgggaggtccttacttaacaaggaccactctctgttaaggaccctccattggaggaagaaaaaatgaatctc 32552000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 1152160 - 1152076
Alignment:
Q  299 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||| ||||||||| ||  | ||||||||| ||||| || | ||| |||| ||| |||||||| ||||||||||||||||||    
T  1152160 taagagcgtctccaatgagaagtccttacttaataaggatcattccccgttaaggaccctccattggaggaagaaaaaatgagtc 1152076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 1560103 - 1560028
Alignment:
Q  305 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatga 380  Q
    |||||||||||| || | |||||||||||| ||||||| | | |||| ||| | |||||| |||||||||||||||    
T  1560103 catctccaatggaaggtccttacttaacaaagaccactcctcgttaaggactccccattggaggaagaaaaaatga 1560028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 3936073 - 3935996
Alignment:
Q  305 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||| ||  ||||||||||||||||| ||  || |||| ||| |||||||| | ||||||||||||||||    
T  3936073 catctccaatgggggtc-cttacttaacaaggaccgctctccgttaaggaccctccattggaagaagaaaaaatgagtc 3935996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 10183041 - 10183100
Alignment:
Q  323 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||||||||||| |   |||| |||||| ||||||| ||||||||||||||||    
T  10183041 cttacttaacaaggaccactccttgttaaggacact-cattgaaagaagaaaaaatgagtc 10183100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 33428592 - 33428672
Alignment:
Q  303 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| | |||||| |||||||| |||| ||| |||| |||   |||||| ||||||| | ||||||||    
T  33428592 agcatctccaatgggaggtccttactgaacaaggatcactccccgttaaggacctcccattggaggaagagataatgagtc 33428672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 55222156 - 55222235
Alignment:
Q  303 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||| || | || |||||||||||||||| |   |||| ||| || ||||| ||||||||||||||||||    
T  55222156 agcatctccaatgggggtct-ttgcttaacaaggaccactccatgttaaggacccttcattggaggaagaaaaaatgagtc 55222235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 5939623 - 5939705
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||| |||||| ||| |||||||||||||||||||| |||||||| ||| | |||||| ||||||||||||||||||    
T  5939623 agagcatctctaatgggggttccttacttaacaaggaccactccccattaaggaccccccattggaggaagaaaaaatgagtc 5939705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 45370715 - 45370799
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctc 385  Q
    ||||||||||||||||||| | |||| ||| |||||| |||| ||| |||| ||| |||||||| ||||||||||||||||||||    
T  45370715 agagcatctccaatgggaggtccttatttaccaaggatcactccccgttaaggactctccattggaggaagaaaaaatgagtctc 45370799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 30627472 - 30627391
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| |||| ||| |||||||| || |||||||||||||||    
T  30627472 agagcatctccaatgggggtc-cttacttaacaaggaccactccccgttaaggaccctccattggagaaagaaaaaatgagtc 30627391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 35719149 - 35719090
Alignment:
Q  324 ttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||    
T  35719149 ttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtc 35719090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 1834750 - 1834834
Alignment:
Q  299 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||| ||||||   | |||||||||||||||||||| ||| |||| ||| |||||||  |||||||||||| |||||    
T  1834750 taagagcatctctaatggggagtccttacttaacaaggaccactccccgttaaggaccctccattagaggaagaaaaaacgagtc 1834834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 12705533 - 12705449
Alignment:
Q  299 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||| ||||||| | |  ||||||||||| ||||||| ||| |||| ||| |||||||| ||||||||||||| ||||    
T  12705533 taagagcatcttcaatggggggtcattacttaacaatgaccactccccgttaaggaccctccattggaggaagaaaaaataagtc 12705449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 47677220 - 47677142
Alignment:
Q  306 atctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtct 384  Q
    |||| ||||||||| | ||||||||||||||| |||| ||  ||||  || |||||||| |||||||||||||||||||    
T  47677220 atcttcaatgggaggtccttacttaacaaggatcactccctgttaagaaccctccattggaggaagaaaaaatgagtct 47677142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 27163374 - 27163333
Alignment:
Q  298 ctaagagcatctccaatgggagtttcttacttaacaaggacc 339  Q
    |||||| ||||||||||||| |||||||||||||||||||||    
T  27163374 ctaagatcatctccaatgggggtttcttacttaacaaggacc 27163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 26992080 - 26992026
Alignment:
Q  329 taacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||| || || |||| ||| || ||||||||||||||||||||||||    
T  26992080 taacaaggaccattttccgttaaggacccttcattgaaggaagaaaaaatgagtc 26992026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 30796562 - 30796611
Alignment:
Q  334 aggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||| |||||||| |||| ||| |||||||||| ||||||||||||||||    
T  30796562 aggatcacttcccgttaaggaccctccattgaaagaagaaaaaatgagtc 30796611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 15456700 - 15456759
Alignment:
Q  323 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||||||||||| ||| |||| ||| | ||||||||||| |||||| ||||||    
T  15456700 cttacttaacaaggaccactccccgttaaggactc-ccattgaaggaggaaaaattgagtc 15456759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 583824 - 583906
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||||| | | |||||||||||||||||| | ||| |||| ||| |||||||| ||||||||||||||||||    
T  583824 agagcatctccaatggggggtccttacttaacaaggaccaatccccgttaaggaccctccattggaggaagaaaaaatgagtc 583906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 8515869 - 8515787
Alignment:
Q  301 agagcatctccaatgggagtttcttactt-aacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 382  Q
    ||||||||||||||||| | | ||||||| ||||||||| ||| ||| |||| ||| |||||||| |||||||||||||||||    
T  8515869 agagcatctccaatggggggtccttactttaacaaggactactccccgttaaggactctccattggaggaagaaaaaatgagt 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 48293932 - 48293850
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||| ||| | |||||| ||||||||||||| ||| |||| ||  |||||||| ||||||||||||| ||||    
T  48293932 agagcatctccaatgagaggtccttactaaacaaggaccactccccgttaaggatcctccattggaggaagaaaaaataagtc 48293850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 48557738 - 48557798
Alignment:
Q  323 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||| |||| |||||||| ||| || ||||| ||||||||||||||||||    
T  48557738 cttacttaacaaggatcactccccattaaggacccttcattggaggaagaaaaaatgagtc 48557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 8489060 - 8488978
Alignment:
Q  301 agagcatctccaatgggagtttcttactt-aacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 382  Q
    ||||||||||||||||| | | ||||||| ||||||||| ||| ||  |||| ||| |||||||| |||||||||||||||||    
T  8489060 agagcatctccaatggggggtccttactttaacaaggactactccctgttaaggactctccattggaggaagaaaaaatgagt 8488978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 17503534 - 17503457
Alignment:
Q  301 agagcatctccaatg-ggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa 377  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||| |||| ||   ||||||| ||||||||||||    
T  17503534 agagcatctccaatgtggggttccttacttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaa 17503457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 17549680 - 17549757
Alignment:
Q  301 agagcatctccaatg-ggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa 377  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||| |||| ||   ||||||| ||||||||||||    
T  17549680 agagcatctccaatgtggggttccttacttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaa 17549757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 6811284 - 6811366
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||| ||||||| | | |||||||||||| ||||||| ||  |||| ||| |||||||||||||||||||||||||||    
T  6811284 agagcatcttcaatggggggtccttacttaacaaagaccactccctgttaaggaccctccattgaaggaagaaaaaatgagtc 6811366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 17096661 - 17096581
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgag 381  Q
    ||||||||||||||||| | |  |||||| |||||||||||| | | |||| ||| |||||||| ||||||||||||||||    
T  17096661 agagcatctccaatggggggtcattacttgacaaggaccactcctcgttaaggaccctccattggaggaagaaaaaatgag 17096581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 382
Target Start/End: Original strand, 37847195 - 37847281
Alignment:
Q  296 cactaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 382  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||| ||| ||||  ||   |||||| |||||||||||||||||    
T  37847195 cacttagagcatctccaatgggaggtccttacttaacaaggaccactccccgttaagaacctcccattggaggaagaaaaaatgagt 37847281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 28967897 - 28967837
Alignment:
Q  323 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    |||||||||||||||||||||||| |||| ||| ||| |||  ||||||||||||||||||    
T  28967897 cttacttaacaaggaccacttcccgttaaggaccctctattagaggaagaaaaaatgagtc 28967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 14332676 - 14332596
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 382  Q
    ||||||||||||| ||| ||  ||||||||| ||||||| || || ||||| ||| ||||||||||| ||||||||||||||    
T  14332676 agagcatctccaacgggggtc-cttacttaataaggaccgctccctattaaggaccctccattgaagaaagaaaaaatgagt 14332596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 21848775 - 21848696
Alignment:
Q  304 gcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||| || ||| |||||||| |||||| |||| | | |||| ||| |||||||| |||||||||||| |||||    
T  21848775 gcatctccaataggggttccttacttagcaaggatcactcctcgttaaggaccctccattggaggaagaaaaaacgagtc 21848696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 36749735 - 36749805
Alignment:
Q  312 aatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 382  Q
    |||||||| | | |||||||||||||||||| |||||||| ||  || ||| | |||||||||||||||||    
T  36749735 aatgggaggtccctacttaacaaggaccactccccattaaggatccttcatcggaggaagaaaaaatgagt 36749805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 564979 - 565057
Alignment:
Q  305 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtct 384  Q
    ||||||||||| |  || |||||||||||||||||||| ||| || | ||| | ||||||||||||||||||||||||||    
T  564979 catctccaatgaggattccttacttaacaaggaccactccccgttgaggactc-ccattgaaggaagaaaaaatgagtct 565057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 2552221 - 2552266
Alignment:
Q  297 actaagagcatctccaatgggagtttcttacttaacaaggaccact 342  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||    
T  2552221 actaagagcatctccaatgggaggtccttacttaacaagggccact 2552266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 33766 - 33684
Alignment:
Q  301 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 383  Q
    ||||||||||||||| ||| | ||||||| |||||||||||| ||  |||| |||   |||||| ||||||||||||||||||    
T  33766 agagcatctccaatgcgaggtccttactttacaaggaccactccctgttaaggacctcccattggaggaagaaaaaatgagtc 33684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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