View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7808_high_4 (Length: 242)
Name: NF7808_high_4
Description: NF7808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7808_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 29094428 - 29094287
Alignment:
| Q |
78 |
caggatagatgaaggtgggtgtactaattgaaacagatatcctccagctatatgaagaggtgttaggacaagccatcgatttataaaagccagttatcct |
177 |
Q |
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| T |
29094428 |
caggatagatgaaggtgggtgtactaattgaaacagat--cctccagctatatgaagaggtgttaggacaagccatcgatttataaaagccagttatcct |
29094331 |
T |
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| Q |
178 |
tttcaaaaagcagtacacaagctaatttgagggagcctatgaag |
221 |
Q |
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| T |
29094330 |
tttcaaaaagcagtacacaagctaatttgagggagcctatgaag |
29094287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29094505 - 29094460
Alignment:
| Q |
1 |
catgaaatcaaagagtgcagaggagctccggtactctttgcacacc |
46 |
Q |
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| T |
29094505 |
catgaaatcaaagtgtgtagagaagctccagtactctttgcacacc |
29094460 |
T |
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