View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7808_low_1 (Length: 561)

Name: NF7808_low_1
Description: NF7808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7808_low_1
NF7808_low_1
[»] chr7 (26 HSPs)
chr7 (5-315)||(20279695-20280005)
chr7 (182-549)||(20231524-20231887)
chr7 (182-549)||(20243589-20243959)
chr7 (182-549)||(20263983-20264346)
chr7 (185-549)||(20284922-20285265)
chr7 (16-345)||(20303865-20304201)
chr7 (5-350)||(20062126-20062466)
chr7 (182-345)||(20289418-20289581)
chr7 (403-549)||(20168021-20168167)
chr7 (182-350)||(20294819-20294987)
chr7 (175-364)||(20167812-20168001)
chr7 (392-549)||(20294639-20294796)
chr7 (424-549)||(20303671-20303796)
chr7 (424-549)||(20279492-20279617)
chr7 (424-549)||(20273788-20273913)
chr7 (222-340)||(20273978-20274096)
chr7 (424-549)||(20062523-20062648)
chr7 (218-345)||(19939299-19939426)
chr7 (218-345)||(19970438-19970565)
chr7 (424-550)||(20005335-20005461)
chr7 (183-350)||(20005104-20005271)
chr7 (424-514)||(19939123-19939213)
chr7 (424-514)||(19970262-19970352)
chr7 (405-531)||(20289251-20289377)
chr7 (15-91)||(20004940-20005016)
chr7 (30-97)||(20289679-20289746)
[»] chr4 (4 HSPs)
chr4 (182-337)||(40823570-40823725)
chr4 (424-531)||(40823793-40823900)
chr4 (30-97)||(40823398-40823465)
chr4 (252-292)||(31708590-31708630)
[»] chr8 (6 HSPs)
chr8 (264-345)||(4159639-4159720)
chr8 (183-345)||(4130194-4130356)
chr8 (282-345)||(4142638-4142701)
chr8 (270-341)||(23189885-23189956)
chr8 (183-345)||(4120113-4120275)
chr8 (297-343)||(15943412-15943458)
[»] chr2 (12 HSPs)
chr2 (263-350)||(2716872-2716959)
chr2 (263-350)||(2723495-2723582)
chr2 (263-350)||(2745325-2745412)
chr2 (263-345)||(2711955-2712037)
chr2 (263-340)||(2704305-2704382)
chr2 (424-516)||(2717038-2717130)
chr2 (424-516)||(2723660-2723752)
chr2 (424-516)||(2745490-2745582)
chr2 (249-340)||(2681800-2681891)
chr2 (424-517)||(2707268-2707361)
chr2 (252-340)||(2698270-2698358)
chr2 (424-516)||(2712514-2712606)
[»] chr1 (3 HSPs)
chr1 (270-340)||(47627663-47627733)
chr1 (233-346)||(21936637-21936750)
chr1 (267-337)||(47593640-47593710)
[»] chr5 (2 HSPs)
chr5 (270-340)||(453819-453889)
chr5 (282-341)||(469788-469847)
[»] chr3 (1 HSPs)
chr3 (243-292)||(5829923-5829972)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 20280005 - 20279695
Alignment:
Q  5 aaatattctcatgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaagcaaaag 104  Q
    ||||||||| || || |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20280005 aaatattcttatcatgactatgatcatatatttctggatctattaaagataaaatatttccttccctccattgtatccagacctaaatgaaaagcaaaag 20279906  T
Q  105 caaatttcaaatatttgtaagttgcggcagcaaaaggaaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactca 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20279905 caaatttcaaatatttgtaagttgcggtagcaaaaggaaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactca 20279806  T
Q  205 gagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20279805 gagcatgctcattgtcataaaagcttgagtttcttctcccgctaacgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaag 20279706  T
Q  305 tccttgcattg 315  Q
    |||||||||||    
T  20279705 tccttgcattg 20279695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 182 - 549
Target Start/End: Complemental strand, 20231887 - 20231524
Alignment:
Q  182 gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaa 281  Q
    ||||||| |||||| ||| ||||||  |||| ||| ||||||||| |||||||||||||| ||| |||  |||||||||| ||| |||||||||||||||    
T  20231887 gcttacatatcctaaaaggctcagattatgcacatcgtcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaa 20231788  T
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaatgtaaaaaattattcaaggtgcaaaataatac 381  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| ||||||||||| ||    
T  20231787 acatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtaacc----cattaaaatgtaaaaaattattcaatgtgcaaaataacac 20231692  T
Q  382 ttgacatttattactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagat 481  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  20231691 ttgacatttattagtactaatatattggataagaaaggcaatcttactaagttccgacaatccttctggtattggcctgatcttcacctcctccaaagat 20231592  T
Q  482 tctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttca 549  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  20231591 tctagccataccaaagtctgatatttttggattcaacttctcatctaacaggacattacttgccttca 20231524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 182 - 549
Target Start/End: Complemental strand, 20243959 - 20243589
Alignment:
Q  182 gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaa 281  Q
    ||||||| |||||| ||| || |||  ||||||||  |||||||| |||||||||||||| ||| |||  |||||||||| ||| |||||||||||||||    
T  20243959 gcttacatatcctaaaaggctaagattatgctcatcatcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaa 20243860  T
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaatgtaaaaaattattcaaggtgcaaaataatac 381  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||    
T  20243859 acatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtagccactacattaaaatgtaaaaagttaatcaagttgcaaaataatac 20243760  T
Q  382 ttgacatttattactactaatatattggataagaaaggcaa---tcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaa 478  Q
    |||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20243759 ttgacaattattactactaatatattggataagaaaggcaatcttcttactaagttccgacaatccttctagtattggcctgatcttcacctcctccaaa 20243660  T
Q  479 gattctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttca 549  Q
     |||||||||| ||||||||| || |||||||||||||||  |||||||||||||||||||||||||||||    
T  20243659 tattctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttca 20243589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 182 - 549
Target Start/End: Complemental strand, 20264346 - 20263983
Alignment:
Q  182 gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaa 281  Q
    |||||||||||||| |||||| |||  ||||||||  |||||||| |||||||||||||||||| |||  |||||||||| ||| |||||||||||||||    
T  20264346 gcttacaaatcctaaaagactaagattatgctcatcatcataaaaacttgagtttcttctcccgataacaatctctagtagcaatacaccaaagctaaaa 20264247  T
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaatgtaaaaaattattcaaggtgcaaaataatac 381  Q
    |||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||   ||||||||||||||||| ||||| ||| |||||||||    
T  20264246 acatctgacttctctgaaaataatccttgcattgcatattcgggagacatgtaaccacta---taaaatgtaaaaaattaatcaagttgctaaataatac 20264150  T
Q  382 ttgacatttattactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagat 481  Q
    || ||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20264149 tttacaattattactactaatatattagatat-aaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcacctcctccaaagat 20264051  T
Q  482 tctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttca 549  Q
    |||||||||||||||||| || |||||||||||||||  |||||||||||| ||||||||||||||||    
T  20264050 tctagccataccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgccttca 20263983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 185 - 549
Target Start/End: Complemental strand, 20285265 - 20284922
Alignment:
Q  185 tacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaaca 284  Q
    ||||||||||| ||| ||||||  |||||||||||||||||| | |||||| ||||||||  |||  |||||||||| |||||||||||| ||||||| |    
T  20285265 tacaaatcctaaaaggctcaga--atgctcattgtcataaaaacatgagttccttctcccagtaacaatctctagtatcaaaacaccaaaactaaaaaaa 20285168  T
Q  285 tctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaatgtaaaaaattattcaaggtgcaaaataatacttg 384  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||| || ||||| ||||||||| ||||||||||||                 |||     
T  20285167 tctgatttctctgaaaataatccttgcattgcatattccggagacatatagccactgcattaaaatataaaaaattatt-----------------cttt 20285085  T
Q  385 acatttattactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattct 484  Q
    |   ||||||||||||| ||||||||||||||| | |  |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  20285084 aa--ttattactactaaaatattggataagaaaaggatacttactaagttccgactatccttctagtattggcctgatcttctccccctccaaagattct 20284987  T
Q  485 agccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttca 549  Q
    | ||||||||||||| || ||||||||||||| |  ||||||||||| |||||||||||||||||    
T  20284986 aaccataccaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttca 20284922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 20304201 - 20303865
Alignment:
Q  16 tgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaagcaaaag--caaatttca 113  Q
    |||| |||||||  |||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||   ||| |||||    
T  20304201 tgatgactatgatcatatatttctggatctattaaagataacatattttcttccctccattgtatccagacctaaatgaaaagaaaaaaatcaagtttca 20304102  T
Q  114 aatatttgtaagttgcg---gcagcaaaagg--aaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactcagagc 208  Q
     |||||||||||||||    ||||||| | |  |||||| ||  | ||||| || ||  |  ||||||||||  ||||||||||||| ||||||| | ||    
T  20304101 gatatttgtaagttgcatcagcagcaataagcaaaaaaagagagtgttattaagtcaaaatcgaactgttaagtcttacaaatcctagaagactcggtgc 20304002  T
Q  209 atgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtcct 308  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  20304001 atgctcattgtcataaaagcttgagtttcttctcccactaacgatctctagaatcaatacaccaaagctaaaaacatctgatttctctgaaaaaagtcct 20303902  T
Q  309 tgcattgcatattcaggagacatgtaaccactacatt 345  Q
     ||||||| |||||||||||||| || ||||| ||||    
T  20303901 cgcattgcgtattcaggagacatatagccactgcatt 20303865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 5 - 350
Target Start/End: Original strand, 20062126 - 20062466
Alignment:
Q  5 aaatattctcatgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaagcaaaag 104  Q
    ||||||||| ||||| |||||||  |||||||||||  |||||||| |||||||||||| ||||||||||||||| ||| |||||||| ||||||| |      
T  20062126 aaatattcttatgatgactatgatcatatatttctgtatctattaaggataaaatattttcttccctccattgtaaccatacctaaataaaaagcataca 20062225  T
Q  105 caaatttcaaatatttgtaagttgcggcagcaaaaggaaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactca 204  Q
    ||  ||||| ||||  |||| || |  |||||||||||||||  ||  | ||||||||  |  ||| |||| | || |||||||||||||| |||| |||    
T  20062226 catgtttcatatatcggtaattttcatcagcaaaaggaaaaaggag--tgttattgagtaaaaaattaactataaaggcttacaaatcctaaaagagtca 20062323  T
Q  205 gagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaag 304  Q
    |||    |||||||||||||||||||||||||||||||||  |||  ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  20062324 gagt---ctcattgtcataaaagcttgagtttcttctcccagtaagaatctcaagtatcaaaacaccaaagctaaaaacatctgatttctctgaaaaaag 20062420  T
Q  305 tccttgcattgcatattcaggagacatgtaaccactacattaaaat 350  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||    
T  20062421 tccttgcattgcgtattcaggagacatataaccactgcattaaaat 20062466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 345
Target Start/End: Complemental strand, 20289581 - 20289418
Alignment:
Q  182 gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaa 281  Q
    |||||||||||||| |||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||     
T  20289581 gcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcccgctaataatctctagtaacaaaacaccaaagctaaag 20289482  T
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacatt 345  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||    
T  20289481 acatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatataaccactgcatt 20289418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 403 - 549
Target Start/End: Original strand, 20168021 - 20168167
Alignment:
Q  403 atattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcgga 502  Q
    |||||||||||| |||||   ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||    
T  20168021 atattggataaggaaggcgcacttactaagttccaacaatcctgctagtattggcctgatcttcacctcctccaaagattctagccataccaaattctga 20168120  T
Q  503 aatttttggattcaacatctcatctaacaggacattacttgccttca 549  Q
     |||||||||||||||  ||||||||||| |||||||||||||||||    
T  20168121 tatttttggattcaactcctcatctaacaagacattacttgccttca 20168167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 182 - 350
Target Start/End: Complemental strand, 20294987 - 20294819
Alignment:
Q  182 gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaa 281  Q
    |||||||||||||| |||  |||||| || ||||  |||||||||  ||||||| ||||||||| |||  |||||||| | |||||||||||||||||||    
T  20294987 gcttacaaatcctataagggtcagagaattctcaaagtcataaaaaattgagttccttctcccggtaacaatctctagcatcaaaacaccaaagctaaaa 20294888  T
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaat 350  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||| |||||||||    
T  20294887 acatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactgcattaaaat 20294819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 175 - 364
Target Start/End: Original strand, 20167812 - 20168001
Alignment:
Q  175 tgttaatgcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaa 274  Q
    |||||| ||||||| |||| | ||| ||||||||||| ||||| || ||||| |||||||| ||||||||| |||  ||||||| || ||||||||||||    
T  20167812 tgttaaggcttacatatcccaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctcccggtaacaatctctaatatcaaaacaccaaa 20167911  T
Q  275 gctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaatgtaaaaaattattc 364  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| || ||||| ||| |||||  ||||| ||||||    
T  20167912 gctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccactgcatcaaaatacaaaaatttattc 20168001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 392 - 549
Target Start/End: Complemental strand, 20294796 - 20294639
Alignment:
Q  392 ttactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccata 491  Q
    ||||| |||| || |||||||||  || ||| ||||||| ||||| |||||||| |||||||||||||||| ||| |  ||||||||||||||||||||     
T  20294796 ttactgctaaaatgttggataaggtagacaaacttactacgttccaacaatcctgctagtattggcctgatgttctctgcctccaaagattctagccatt 20294697  T
Q  492 ccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttca 549  Q
    |||||||| || ||||||||||||| |  |||||||||||||||||||||||||||||    
T  20294696 ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttca 20294639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 424 - 549
Target Start/End: Complemental strand, 20303796 - 20303671
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc 523  Q
    |||||||||||||||||| |||  ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  20303796 cttactaagttccgacaaccctggtagtattggcctgattttctctccctccaaagattctagccataccaaagtcggaaatttttggattcagctcctc 20303697  T
Q  524 atctaacaggacattacttgccttca 549  Q
    |||||||| || |||||||| |||||    
T  20303696 atctaacaagatattacttgtcttca 20303671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 424 - 549
Target Start/End: Complemental strand, 20279617 - 20279492
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc 523  Q
    ||||||| ||||||||||| ||   ||||||| ||||||  || |||||||||||||||||||||||||||||||| || ||||||||||||| |  |||    
T  20279617 cttactatgttccgacaattctggaagtattgacctgattgtctccccctccaaagattctagccataccaaagtctgatatttttggattcagctcctc 20279518  T
Q  524 atctaacaggacattacttgccttca 549  Q
    ||||||||||||||||||||||||||    
T  20279517 atctaacaggacattacttgccttca 20279492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 424 - 549
Target Start/End: Complemental strand, 20273913 - 20273788
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc 523  Q
    ||||||||||||| ||||| ||    |||||| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |  |||    
T  20273913 cttactaagttccaacaattctggaggtattgacctgatcgtctccccctccaaagattctagccataccaaagtcggcaatttttggattcagctcctc 20273814  T
Q  524 atctaacaggacattacttgccttca 549  Q
     ||||||| |||||||||||||||||    
T  20273813 gtctaacaagacattacttgccttca 20273788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 222 - 340
Target Start/End: Complemental strand, 20274096 - 20273978
Alignment:
Q  222 taaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatatt 321  Q
    ||||| |||||||||||| ||||| |||  |||||||| | ||||||||||||||||||||||||||  ||||| ||||| | |||||||||||||||||    
T  20274096 taaaaacttgagtttcttttcccggtaagaatctctaggatcaaaacaccaaagctaaaaacatctgtcttctcggaaaataatccttgcattgcatatt 20273997  T
Q  322 caggagacatgtaaccact 340  Q
    |||||||||| || |||||    
T  20273996 caggagacatatagccact 20273978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 424 - 549
Target Start/End: Original strand, 20062523 - 20062648
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc 523  Q
    |||||||||||||||||| |||  ||||||||||||||||||| |  || ||||||||||||||||| |||||||| |||| ||| ||||| |||  |||    
T  20062523 cttactaagttccgacaaccctagtagtattggcctgatcttctcttccaccaaagattctagccattccaaagtcagaaactttgggattaaactcctc 20062622  T
Q  524 atctaacaggacattacttgccttca 549  Q
    |||||||||||  |||||||||||||    
T  20062623 atctaacaggatgttacttgccttca 20062648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 19939426 - 19939299
Alignment:
Q  218 gtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgca 317  Q
    ||||||||||||||| |||||||| || ||||| ||||| || |  ||||| ||||||||||| ||||| ||||| || ||||| |||||||||||||||    
T  19939426 gtcataaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgca 19939327  T
Q  318 tattcaggagacatgtaaccactacatt 345  Q
    ||||| |||||||| |||||||| ||||    
T  19939326 tattctggagacatataaccactgcatt 19939299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 19970565 - 19970438
Alignment:
Q  218 gtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgca 317  Q
    ||||||||||||||| |||||||| || ||||| ||||| || |  ||||| ||||||||||| ||||| ||||| || ||||| |||||||||||||||    
T  19970565 gtcataaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgca 19970466  T
Q  318 tattcaggagacatgtaaccactacatt 345  Q
    ||||| |||||||| |||||||| ||||    
T  19970465 tattctggagacatataaccactgcatt 19970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 424 - 550
Target Start/End: Original strand, 20005335 - 20005461
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc 523  Q
    ||||||| |||||||||| ||||  ||||||||| |||||||||| | ||||||||||||| |||||||||||||| || |||||||||||||   ||||    
T  20005335 cttactatgttccgacaaccctttgagtattggcatgatcttcactcactccaaagattctggccataccaaagtcagatatttttggattcaggttctc 20005434  T
Q  524 atctaacaggacattacttgccttcat 550  Q
     |||| || || ||||||||| |||||    
T  20005435 gtctagcaagatattacttgctttcat 20005461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 350
Target Start/End: Original strand, 20005104 - 20005271
Alignment:
Q  183 cttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaa 282  Q
    |||||||||||||  ||| |||||| ||  ||||  ||||||||||||||||||| ||| || ||||  ||||||| || |||||| |||||||| || |    
T  20005104 cttacaaatcctaagagagtcagagaattttcatgttcataaaagcttgagtttcgtcttccactaacaatctctattagcaaaactccaaagctgaaga 20005203  T
Q  283 catctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaat 350  Q
    | |||||||| || ||||| | ||||||||||||||| || |||| ||| |||||||| |||| ||||    
T  20005204 cgtctgatttatccgaaaatactccttgcattgcatactctggagccatataaccactgcattgaaat 20005271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 19939213 - 19939123
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggatt 514  Q
    |||||||||| || ||||  ||||| |||||  | |||||||||| ||||||||||||||| |||||||||||||| || |||||||||||    
T  19939213 cttactaagtaccaacaactcttcttgtattttcttgatcttcactccctccaaagattctggccataccaaagtctgatatttttggatt 19939123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 19970352 - 19970262
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggatt 514  Q
    |||||||||| || ||||  ||||| |||||  | |||||||||| ||||||||||||||| |||||||||||||| || |||||||||||    
T  19970352 cttactaagtaccaacaactcttcttgtattttcttgatcttcactccctccaaagattctggccataccaaagtctgatatttttggatt 19970262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 531
Target Start/End: Complemental strand, 20289377 - 20289251
Alignment:
Q  405 attggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaa 504  Q
    |||||| ||| ||||||  |||||||||||||||||| |||| |||||||  |   |||||| | |||| | ||||||||||||||||||||||| || |    
T  20289377 attggacaaggaaggcacacttactaagttccgacaacccttatagtattttctgtatcttctctcccttcgaagattctagccataccaaagtctgata 20289278  T
Q  505 tttttggattcaacatctcatctaaca 531  Q
    |||| |||||||||  ||| |||||||    
T  20289277 ttttgggattcaactcctcgtctaaca 20289251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 20004940 - 20005016
Alignment:
Q  15 atgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaa 91  Q
    ||||| |||||||  |||||||||||||||||| ||||||||||||||  ||||| ||||||| |||||| ||||||    
T  20004940 atgatgactatgatcatatatttctggttctatcaaagataaaatattgtcttccttccattgaatccaagcctaaa 20005016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 20289746 - 20289679
Alignment:
Q  30 atatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaa 97  Q
    |||||||||||  | ||| |||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  20289746 atatatttctgtatttataaaagataaaatattgccttccttccattgtatccaaacctagatgaaaa 20289679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 182 - 337
Target Start/End: Original strand, 40823570 - 40823725
Alignment:
Q  182 gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaa 281  Q
    |||||||||||||| |||  |||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||     
T  40823570 gcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaatcttgagtttcttctcccactaataatctctagtatcaaaacaccaaagctaaag 40823669  T
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaacc 337  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  40823670 acatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataacc 40823725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 424 - 531
Target Start/End: Original strand, 40823793 - 40823900
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc 523  Q
    |||||||||||||||||| |||  ||||||||| || |||||| | |||||||||||||||||||||||||||||| || |||||||||||||||  |||    
T  40823793 cttactaagttccgacaaccctaatagtattggtcttatcttctctccctccaaagattctagccataccaaagtctgatatttttggattcaactcctc 40823892  T
Q  524 atctaaca 531  Q
     |||||||    
T  40823893 gtctaaca 40823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 40823398 - 40823465
Alignment:
Q  30 atatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaa 97  Q
    |||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  40823398 atatatttcttgatctataaaagataaaatattgccttccctccattgtatccaaacctacatgaaaa 40823465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 31708630 - 31708590
Alignment:
Q  252 atctctagtaccaaaacaccaaagctaaaaacatctgattt 292  Q
    ||||||||||  |||||||||||||| ||||||||||||||    
T  31708630 atctctagtagtaaaacaccaaagctgaaaacatctgattt 31708590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 4159639 - 4159720
Alignment:
Q  264 aaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacatt 345  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| | ||| |||||||| ||||    
T  4159639 aaaactccaaagctataaacatctgatttctcagaaaaaagtccttccattgcatattcaggcggcatataaccactgcatt 4159720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 345
Target Start/End: Original strand, 4130194 - 4130356
Alignment:
Q  183 cttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaa 282  Q
    |||||||| || ||||| || |||| || |||||| | |||||||||    |||||||  ||||| |  |||||||| |  ||||||||||||||| | |    
T  4130194 cttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatata 4130293  T
Q  283 catctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacatt 345  Q
    |||||||||||||||| ||||||||   ||||||||||||||| | ||| |||||||||||||    
T  4130294 catctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatt 4130356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 4142638 - 4142701
Alignment:
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacatt 345  Q
    ||||||||||||||||| ||||| || | ||||||||||||||| | ||| |||||||| ||||    
T  4142638 acatctgatttctctgagaaaagcccctccattgcatattcaggtggcatataaccactgcatt 4142701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 23189956 - 23189885
Alignment:
Q  270 ccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccacta 341  Q
    ||||||||||| || || |||||  |||| ||||| |||| ||| |||||||||||||||||||| ||||||    
T  23189956 ccaaagctaaagacgtcggatttaactgagaaaaggccttccatagcatattcaggagacatgtagccacta 23189885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 345
Target Start/End: Original strand, 4120113 - 4120275
Alignment:
Q  183 cttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaa 282  Q
    |||||||| |||||||| || || | || |||  ||| ||||||||| |  ||||||| ||| || |  |||||||| |  ||||| ||||||||| | |    
T  4120113 cttacaaagcctacaaggctaagtgaatcctcgctgtgataaaagctcgtatttcttcgcccactgacaatctctagcaataaaaccccaaagctatata 4120212  T
Q  283 catctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacatt 345  Q
    ||||||||||||| || ||||| || | |||||||||||| || | ||| |||||||| ||||    
T  4120213 catctgatttctcagagaaaagcccctccattgcatattctggcggcatataaccactgcatt 4120275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 15943458 - 15943412
Alignment:
Q  297 gaaaaaagtccttgcattgcatattcaggagacatgtaaccactaca 343  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||||    
T  15943458 gaaaaaattccttccatcgcatactcaggagacatgtaaccactaca 15943412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 2716872 - 2716959
Alignment:
Q  263 caaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaat 350  Q
    |||||| ||||| ||||| |||||||||||||||||||| | ||||| |||||||||||| ||||||||||| ||||| |||| ||||    
T  2716872 caaaaccccaaaactaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacatgtatccactgcatttaaat 2716959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 2723495 - 2723582
Alignment:
Q  263 caaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaat 350  Q
    |||||| ||||| ||||| |||||||||||||||||||| || |||| |||||||||||| ||||||||||| ||||| |||| ||||    
T  2723495 caaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgcatttaaat 2723582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 2745325 - 2745412
Alignment:
Q  263 caaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacattaaaat 350  Q
    |||||| ||||| ||||| |||||||||||||||||||| || |||| |||||||||||| ||||||||||| ||||| |||| ||||    
T  2745325 caaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgcatttaaat 2745412  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 2711955 - 2712037
Alignment:
Q  263 caaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccactacatt 345  Q
    |||||| ||||| ||||||| |||||||||||||||||| |  |||| |||||||||||| |||||||| || ||||| ||||    
T  2711955 caaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgcatattctggagacatatatccactgcatt 2712037  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 2704305 - 2704382
Alignment:
Q  263 caaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccact 340  Q
    |||||| |||||||||||||||||||||||||||||||| |  || | |||||| ||||| |||||||| || |||||    
T  2704305 caaaaccccaaagctaaaaacatctgatttctctgaaaacaacccctccattgcgtattctggagacatatatccact 2704382  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 516
Target Start/End: Original strand, 2717038 - 2717130
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca 516  Q
    ||||||| ||||| ||||||||||| |||||  |||  | ||| |  ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  2717038 cttactatgttcccacaatccttcttgtatttccctcgttttcgctacctccgaagattctagccatgccaaagtcggatatttttggattca 2717130  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 516
Target Start/End: Original strand, 2723660 - 2723752
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca 516  Q
    ||||||| ||||| ||||||||||| |||||  |||  | ||| |  ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  2723660 cttactatgttcccacaatccttcttgtatttccctcgttttcgctacctccgaagattctagccatgccaaagtcggatatttttggattca 2723752  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 516
Target Start/End: Original strand, 2745490 - 2745582
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca 516  Q
    ||||||| ||||| ||||||||||| |||||  |||  | ||| |  ||||| |||||||||||||| ||||||| ||| |||||||||||||    
T  2745490 cttactatgttcccacaatccttcttgtatttccctcgttttcgctacctccgaagattctagccatgccaaagttggatatttttggattca 2745582  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 2681800 - 2681891
Alignment:
Q  249 atgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccact 340  Q
    ||||||||||| || | ||| |||||||||||||||||||||||  |||| ||   ||| | ||| ||||||||||||||||| || |||||    
T  2681800 atgatctctagcacaagaactccaaagctaaaaacatctgatttaactgagaagtttccgtccatagcatattcaggagacatatagccact 2681891  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 2707268 - 2707361
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaa 517  Q
    ||||||| ||||| |||||||| || |||||  ||| || ||| |  ||||| |||||||||||||| ||||| || || ||||||||||||||    
T  2707268 cttactatgttcccacaatcctccttgtatttccctcattttcgctacctccgaagattctagccatgccaaaatcagatatttttggattcaa 2707361  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 2698270 - 2698358
Alignment:
Q  252 atctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccact 340  Q
    ||||||||||  || |||||||| ||| | |||||||||||  ||||||  || |||| ||| || |||||||||||||| ||||||||    
T  2698270 atctctagtagtaatacaccaaaactatatacatctgatttgactgaaactaggccttccatagcgtattcaggagacatataaccact 2698358  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 516
Target Start/End: Original strand, 2712514 - 2712606
Alignment:
Q  424 cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca 516  Q
    ||||||| ||||||| ||||||||| |||||| |||  | ||||   |||||||| ||| | ||||| |||||||| || |||||||||||||    
T  2712514 cttactatgttccgaaaatccttcttgtattgccctcgttttcattgcctccaaaaattttggccatgccaaagtcagatatttttggattca 2712606  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 47627733 - 47627663
Alignment:
Q  270 ccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccact 340  Q
    ||||| ||||||||||| || |||||||||||  |||| |||||||||||||| |||||||||||||||||    
T  47627733 ccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccggagacatgtaaccact 47627663  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 21936750 - 21936637
Alignment:
Q  233 gtttcttctcccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatg 332  Q
    ||||||| | || ||||| ||||| ||||||| |||||| |||||||||||||| || ||| |||||||| |||| |  |  ||||| || |||||||||    
T  21936750 gtttctttttccactaataatctcaagtaccacaacaccgaagctaaaaacatcggacttcactgaaaaatgtccatcaagggcatactctggagacatg 21936651  T
Q  333 taaccactacatta 346  Q
    |||||||| |||||    
T  21936650 taaccactgcatta 21936637  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 47593710 - 47593640
Alignment:
Q  267 acaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaacc 337  Q
    |||||||| ||||||||||| || |||||||||||  ||||  ||||||||||||| || |||||||||||    
T  47593710 acaccaaaactaaaaacatccgacttctctgaaaagtgtccaagcattgcatattctggggacatgtaacc 47593640  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 453819 - 453889
Alignment:
Q  270 ccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccact 340  Q
    ||||||||||| ||||||||||| |||||| || |||| |||||||||||||| | |||||| ||||||||    
T  453819 ccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccact 453889  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 469788 - 469847
Alignment:
Q  282 acatctgatttctctgaaaaaagtccttgcattgcatattcaggagacatgtaaccacta 341  Q
    ||||| |||||||| |||||  |||| |||||||||||||| |||||||| |||||||||    
T  469788 acatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataaccacta 469847  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 5829972 - 5829923
Alignment:
Q  243 ccgctaatgatctctagtaccaaaacaccaaagctaaaaacatctgattt 292  Q
    |||||||||||||| ||||| | ||| ||||||||||||||||| |||||    
T  5829972 ccgctaatgatctcaagtacaacaactccaaagctaaaaacatcagattt 5829923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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