View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7808_low_3 (Length: 398)
Name: NF7808_low_3
Description: NF7808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7808_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 3653654 - 3653906
Alignment:
| Q |
19 |
ggaactgttcaaatcttggccaagaggagaggccaagaactcctcccactttctatgtgtctcacttaaagggagccgtttcgacaacacaagtaaaact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3653654 |
ggaactgttcaaatcttggccaagaggagaggccaagaactcctcccattttctgtgtgtctcacttaatgggagccgtttcgacaacacaagtaaaact |
3653753 |
T |
|
| Q |
119 |
acctattttgtgtctaa--ctcgagtccaatattaaggttaatattgaaagctttaaacctcaatgtgaaactt--agtactgtgttatagttaaagaag |
214 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| || | |||||||||||| | | | |
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| T |
3653754 |
gcctagtttgtgtctaactctcgagtccaatattaaggttaatattaaaagccttaaacctcaatgaaaaacttagaggagtgtgttatagttgatggaa |
3653853 |
T |
|
| Q |
215 |
gcttgtttttgtaactcagactatgtactattacaaatgtccctttcttgatt |
267 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||| |||| |||||||||| |
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| T |
3653854 |
gcttgtttttgtaacttagaccatgtactattacaaaggtccatttcttgatt |
3653906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 276 - 387
Target Start/End: Original strand, 3654016 - 3654131
Alignment:
| Q |
276 |
gaaagtgtaaaaaatagatcaaaaactaatacacaag-cacatacaatgttgtctgccaaacatgtagcaaaatcgcagactc---cttaaaataacaag |
371 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||| |||||||| |||||||||||||| |
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| T |
3654016 |
gaaagtgcaaaaaatagatcaaaaactaatacacaagtcacatacaatgttttctcccaaacatgtaacaaaatagcagactcctgcttaaaataacaag |
3654115 |
T |
|
| Q |
372 |
atcagtccaagcacca |
387 |
Q |
| |
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|||||||||||||||| |
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| T |
3654116 |
atcagtccaagcacca |
3654131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 3675508 - 3675287
Alignment:
| Q |
38 |
ccaagaggagaggccaagaactcctcccactttctatgtgtctcacttaaagggagccgtttcgacaacacaagtaaaactacctattttgtgtctaa-- |
135 |
Q |
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||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
3675508 |
ccaagaggagaggccaagaactcctcccattttccatgt--ctcgcttaaagggagccatttcgacaacacaagtgaaactacctagtttgtgtctaact |
3675411 |
T |
|
| Q |
136 |
ctcgagtccaatattaaggttaatattgaaagctttaaacctcaatgtgaaacttagtactgtgt----tatagttaaagaaggcttgtttttgtaactc |
231 |
Q |
| |
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||||||||| | || || ||||| ||||||||| ||| ||||||| | ||||| ||||||| ||| |||||||||||| ||||| |
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| T |
3675410 |
ctcgagtcc----------tcgatgttaaaagccttaaacctctatgagaaactt--cagtgtgttatatatagttgaaggaggcttgtttttctaactt |
3675323 |
T |
|
| Q |
232 |
agactatgtactattacaaatgtccctttcttgatt |
267 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |
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| T |
3675322 |
agactatgtactattacaaaggtccatttcttgatt |
3675287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 3706447 - 3706342
Alignment:
| Q |
164 |
aaagctttaaacctcaatgtgaaacttagt--actgtgttatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttc |
261 |
Q |
| |
|
||||| ||||||||||||| ||||||||| | ||||||||||| | | |||||||||||||||||| ||||||||||||| |||||| |||| |||| |
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| T |
3706447 |
aaagccttaaacctcaatgagaaacttagacgagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtactactacaaaggtccatttc |
3706348 |
T |
|
| Q |
262 |
ttgatt |
267 |
Q |
| |
|
|||||| |
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|
| T |
3706347 |
ttgatt |
3706342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 3651090 - 3651194
Alignment:
| Q |
164 |
aaagctttaaacctcaatgtgaaacttagt--actgtgttatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttc |
261 |
Q |
| |
|
||||| ||||||||||||| ||||||||| | ||||||||||| | | |||||||||||||||||| ||||||||||||| |||||| |||| |||| |
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| T |
3651090 |
aaagccttaaacctcaatgagaaacttagacgagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtactactacaaaggtccatttc |
3651189 |
T |
|
| Q |
262 |
ttgat |
266 |
Q |
| |
|
||||| |
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|
| T |
3651190 |
ttgat |
3651194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 3651299 - 3651373
Alignment:
| Q |
313 |
cacatacaatgttgtctgccaaacatgtagcaaaatcgc--agactccttaaaataacaagatcagtccaagcac |
385 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| || | ||||||||||||| |||||||||||||||||| |
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| T |
3651299 |
cacatacaacgttgtctgccaaacatgttgcaaaatagcaaaaactccttaaaatagcaagatcagtccaagcac |
3651373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 3679088 - 3679033
Alignment:
| Q |
19 |
ggaactgttcaaatcttggccaagaggagaggccaagaactcctcccactttctat |
74 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
3679088 |
ggaactgttcaaatcttggccaagaagagagaccaagaactcctcccattttctat |
3679033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 3701355 - 3701289
Alignment:
| Q |
324 |
ttgtctgccaaacatgtagcaaaatcgcagactcct---taaaataacaagatcagtccaagcacca |
387 |
Q |
| |
|
|||| |||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||| |
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| T |
3701355 |
ttgtgtgccaaacatgtagcaaagtagcatactcctccttaaaataacaagatcagtccaagcacca |
3701289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 3675179 - 3675059
Alignment:
| Q |
278 |
aagtgtaaaaaatagatcaaaaactaatacac-aagcacatacaatgttgtctgccaaa----catgtagcaaaatcgc---agac---tccttaaaata |
366 |
Q |
| |
|
||||| ||||||||||||||||||||||| || || ||||||||||| | | ||||||| ||||||||||||| || |||| |||| |||||| |
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| T |
3675179 |
aagtgaaaaaaatagatcaaaaactaataaacaaatcacatacaatgctatttgccaaacatgcatgtagcaaaatagcaaaagactcttcctaaaaata |
3675080 |
T |
|
| Q |
367 |
acaagatcagtccaagcacca |
387 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
3675079 |
acaagatcagtccaagcacca |
3675059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 3685851 - 3685817
Alignment:
| Q |
19 |
ggaactgttcaaatcttggccaagaggagaggcca |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
3685851 |
ggaactgttcaaatcttggccaagaggagaggcca |
3685817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 3693618 - 3693573
Alignment:
| Q |
19 |
ggaactgttcaaatctt-ggccaagaggagaggccaagaactcctc |
63 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
3693618 |
ggaactgttcacatctttggccaagaggagaggccaagaacccctc |
3693573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 24300572 - 24300459
Alignment:
| Q |
288 |
aatagatcaaaaactaatacacaagcaca---------tacaatgttgtctgccaaacatgtagcaaaatcgcagactcc---ttaaaataacaagatca |
375 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| | | |||||||||||||||||||| ||| ||||| ||||||||||||||||| |
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|
| T |
24300572 |
aatagatcaaaaactaatacacaagtacacaagtcaaatacaatgctatttgccaaacatgtagcaaaatagcacactcccccttaaaataacaagatca |
24300473 |
T |
|
| Q |
376 |
gtccaagcaccacc |
389 |
Q |
| |
|
|||||||||||| |
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|
| T |
24300472 |
aaccaagcaccacc |
24300459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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