View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7809_high_3 (Length: 322)
Name: NF7809_high_3
Description: NF7809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7809_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 50448994 - 50449281
Alignment:
| Q |
18 |
catttgtcgctctctagtttctcattctctaacctagcttgttgaggtctacaaaaaataccaacgctgtcttgtagcttcgactcttcgtattctattt |
117 |
Q |
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| T |
50448994 |
catttgtcgctctctagtttctcattctctaacctagcttgttaaggtgtacaaagaataccaacgctgtcttgtagcttcgactcttcgtattctattt |
50449093 |
T |
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| Q |
118 |
ttaagtactcataagctttcaacatacgagacattttggttgagttcttacattctctataagaacattcagactccctacatttggctcttgctttann |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50449094 |
ttaagtactcataagctttcaacatacgagacattttggttgagttcttacattctctataagaacattcagactccctacatttggctcttgctttatt |
50449193 |
T |
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| Q |
218 |
nnnnnctttcttcacccgcttaattaatcctccccatttgtatggtataatcatgtacaacatactttaaactttctagatttccaaa |
305 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50449194 |
tttatctttcttcacccacttaattaatcctccccatttgtatggtataatcatgtacaacatactttaaactttctagatttccaaa |
50449281 |
T |
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