View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7809_low_2 (Length: 351)
Name: NF7809_low_2
Description: NF7809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7809_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 2793580 - 2793243
Alignment:
| Q |
1 |
ataattgcaggatgagaaggaaacattttatttttaattgaagcaacatagaacgaaatatatcatcttggagctgtatcacgaagaacccaaatgtctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2793580 |
ataattgcaggatgagaaggaaacattttatttttaattgaagcaacatagaacgaaatatgtcatcttggagctgtatcacgaagaacccaaacgtctg |
2793481 |
T |
|
| Q |
101 |
tccactgacatgagaaacaatttagtcagttatctcatacaattgtcaacttaattaaagaaataacacataaaattttttcaaaaaaggttaaacaaat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
2793480 |
tccactgacacgagaaacaatttagtcagttatctcatacaattgtcaacttaattaaagaaataagacattaaattttttcaaaaaaggttaaacaaat |
2793381 |
T |
|
| Q |
201 |
taaatgaagcatcgttgtaaaactgaatactagtacaagaataacttatatagtacattaaaatcaataaaatttaaagttataaccaaatttattcttg |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2793380 |
taaatgaagcatcactgtaaaactgaatactagtacaagaat-acttatatagtacattaaaatcaataaaatttaaagttataaccaaatttattcttg |
2793282 |
T |
|
| Q |
301 |
aaaagtttcaaattccaactttagaatttaccgtgtgtg |
339 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2793281 |
aaaagtttcaaattccaactttagtatttactgtgtgtg |
2793243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 2771602 - 2771459
Alignment:
| Q |
113 |
agaaacaatttagtcagttatctcatacaattgtc----aacttaattaaagaaataacacataaaat-tttttcaaaaaaggttaaacaaattaaatga |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||| ||| | |||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
2771602 |
agaaacaatttactcagttatctcatacaattgtcggtcaacttaattaaa-------cacgtcaaatctttttcaaaaaagattaaacacattaaatga |
2771510 |
T |
|
| Q |
208 |
agcatcgttgtaaaactgaatactagtacaagaataacttatatagtacat |
258 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
2771509 |
agcatcgctgtaaaactgaatgctagtgcaagaatactttatatagaacat |
2771459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 2752653 - 2752554
Alignment:
| Q |
5 |
ttgcaggatgagaaggaaacattttatttttaattgaagcaacatagaacgaaatatatcatcttggagctgtatcacgaagaacccaaatgtctgtcca |
104 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||| ||| |||||| ||||||||||||| |||||||| |||||| |||| ||||||||||| |||||||| |
|
|
| T |
2752653 |
ttgccggacgagaaggaagcattttattttgaat-gaagcactatagaacgaaatacatcatctttgagctgcatcatagagaacccaaatttctgtcca |
2752555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 2821078 - 2821032
Alignment:
| Q |
113 |
agaaacaatttagtcagttatctcatacaattgtcaacttaattaaa |
159 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2821078 |
agaaacaatcaagtcagttatctcatagaattgtcaacttaattaaa |
2821032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 2809728 - 2809679
Alignment:
| Q |
193 |
aaacaaattaaatgaagcatcgttgtaaaactgaatactagtacaagaat |
242 |
Q |
| |
|
||||| |||||||||| | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
2809728 |
aaacacattaaatgaaacgtcgttataaaactgaatgctagtacaagaat |
2809679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 11115044 - 11115090
Alignment:
| Q |
113 |
agaaacaatttagtcagttatctcatacaattgtcaacttaattaaa |
159 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11115044 |
agaaacaattgagtcagttatctcatacaattgtcaactaaattaaa |
11115090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University