View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7809_low_3 (Length: 346)
Name: NF7809_low_3
Description: NF7809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7809_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 49168825 - 49168487
Alignment:
| Q |
1 |
cccctggtttcaacaatattaaatctttcaacttatcccacagatcttttcctccccgccttacaaggtgcatatacatttactatagaaactggagttt |
100 |
Q |
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| T |
49168825 |
cccctggtttcaacaatattaaatctttcaacttatcccacagatcttttcctccccgccttacaaggtgcatatacatttactatagaaactggagttt |
49168726 |
T |
|
| Q |
101 |
cctcttgtccccacaatccatccaagcaaataaaatgatcccctctagcctcacattgtaattttaaatttttataattccaaatcaccaatagtcctcc |
200 |
Q |
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| T |
49168725 |
cctcttgtccccacaatccatccaagcaaataaaatgatcccctctagcctcacattgtaattttaaatttttataattccaaatcactaatagtcctcc |
49168626 |
T |
|
| Q |
201 |
tgatcttacctctgatgccttggccgcacaaaattttgcaaactttcctatacaccgcggctaatttagtttcttggacacaatatatctggattatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49168625 |
tgatcttacctctgatgccttggccgcacaaaattttgcaaactttcctatacaccgcggctaatttagtttcttggacacaatatatctggattatttt |
49168526 |
T |
|
| Q |
301 |
tcccgatcacttgtacacatccttcttctctgctactcc |
339 |
Q |
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||||||||||||||||||||||||||| | ||||||||| |
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| T |
49168525 |
tcccgatcacttgtacacatccttcttttttgctactcc |
49168487 |
T |
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