View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7809_low_5 (Length: 265)
Name: NF7809_low_5
Description: NF7809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7809_low_5 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: scaffold0061 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 51337 - 51092
Alignment:
| Q |
4 |
tatatattaaagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggttggtgtgtaattaaaatctaatatgcaaataaaagg |
103 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |
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| T |
51337 |
tatatactaaagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggtttgtgtgtaattcaaatctaatatgcaaatgaaagg |
51238 |
T |
|
| Q |
104 |
tctcagaggaaaaataaatagtgaacatactctccattttcataataaaaa---agctgcattcaagtgaaagnnnnnnnctgtaccattaatttacgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
51237 |
tctcagaggaaaaataaatagtgaacatactctccattttcataataaaaaagcagctgcattcaagtgaaagaaaaaaattgtaccattaatttacgtt |
51138 |
T |
|
| Q |
201 |
atttgtgacttatcaattgtcattgaacttccatcatgcttggtta |
246 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51137 |
atttgtgacttaccaattgtcattgaacttccatcatgcttggtta |
51092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 147297 - 147542
Alignment:
| Q |
4 |
tatatattaaagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggttggtgtgtaattaaaatctaatatgcaaataaaagg |
103 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |
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| T |
147297 |
tatatactaaagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggtttgtgtgtaattcaaatctaatatgcaaatgaaagg |
147396 |
T |
|
| Q |
104 |
tctcagaggaaaaataaatagtgaacatactctccattttcataataaaaa---agctgcattcaagtgaaagnnnnnnnctgtaccattaatttacgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
147397 |
tctcagaggaaaaataaatagtgaacatactctccattttcataataaaaaagcagctgcattcaagtgaaagaaaaaaattgtaccattaatttacgtt |
147496 |
T |
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| Q |
201 |
atttgtgacttatcaattgtcattgaacttccatcatgcttggtta |
246 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
147497 |
atttgtgacttaccaattgtcattgaacttccatcatgcttggtta |
147542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 40652081 - 40652312
Alignment:
| Q |
4 |
tatatattaaagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggttggtgtgtaattaaaatctaatatgcaaataaaagg |
103 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40652081 |
tatatactaaagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggttggtgtgtaattaaaatctaatatgcaaatgaaagg |
40652180 |
T |
|
| Q |
104 |
tctcagaggaaaaataaatagtgaacatactctccattttcataataaaaaagctgcattcaagtgaaagnnnnnnnctgtaccattaatttacgttatt |
203 |
Q |
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||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40652181 |
tcttagaggaaaaataaatagtgatcattctctccattttcataataaaaaagctgcattcaagtgaaagaaaaaaactgtaccattaatttacgttatt |
40652280 |
T |
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| Q |
204 |
tgtgacttatcaattgtcattgaacttccatc |
235 |
Q |
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| T |
40652281 |
tgtgacttaccaattgtcattgaacttccatc |
40652312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 5881111 - 5881345
Alignment:
| Q |
12 |
aaagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggttggtgtgtaattaaaatctaatatgcaaataaaaggtctcagag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
5881111 |
aaagaattacaacatttggttttcaattagtgaaataaatatgtgaactaaaaggttggtgtgtaattaaaatctaatatgcaaatgaaaggtctcatag |
5881210 |
T |
|
| Q |
112 |
gaaaaataaatagtgaacatactctccattttcataat-aaaaaagctgcattcaagtgaaagnnnnnnnctgtaccattaatttacgttatttgtgact |
210 |
Q |
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||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5881211 |
aaaaaataaatagtgaacatgctcttcattttcataataaaaaaagctgcattcaagtgaaag-aaaaaactgtaccattaatttacgttatttgtgact |
5881309 |
T |
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| Q |
211 |
tatcaattgtcattgaacttccatcatgcttggtta |
246 |
Q |
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|| ||||||||||||||| ||||||||||||||||| |
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| T |
5881310 |
taccaattgtcattgaacctccatcatgcttggtta |
5881345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 25539582 - 25539444
Alignment:
| Q |
113 |
aaaaataaatagtgaacata-ctctccattttcataataaaaaagctgcattcaagtgaa---agnnnnnnnctgtaccattaatttacgttatttgtga |
208 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || | ||| ||||||| ||||||||||||| |
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| T |
25539582 |
aaaaataaagagtgaacataactctccattttcataataaaaaagctgcattcaagtgaaagtagaaaaaagcagta-cattaatgcacgttatttgtga |
25539484 |
T |
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| Q |
209 |
cttatcaattgtcattga--acttccatcatgcttggtta |
246 |
Q |
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||||||||| |||||||| |||||||||||||||||||| |
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| T |
25539483 |
cttatcaatcgtcattgatcacttccatcatgcttggtta |
25539444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 37332970 - 37333000
Alignment:
| Q |
134 |
tctccattttcataataaaaaagctgcattc |
164 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37332970 |
tctccattttcataataaaaaagctgcattc |
37333000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 4521 - 4451
Alignment:
| Q |
13 |
aagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggttggtgtgtaattaaaa |
83 |
Q |
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|
|||||| | |||||||||||||||||||||| |||| ||||||||||||||| |||| ||| ||||||||| |
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|
| T |
4521 |
aagaatcataacatttggttttcaattagtgcaataaatatgtgaactaaaaagttgatgtataattaaaa |
4451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 4657226 - 4657156
Alignment:
| Q |
13 |
aagaattacaacatttggttttcaattagtgaaatacatatgtgaactaaaaggttggtgtgtaattaaaa |
83 |
Q |
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|
|||||| | |||||||||||||||||||||| |||| ||||||||||||||| |||| ||| ||||||||| |
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| T |
4657226 |
aagaatcataacatttggttttcaattagtgcaataaatatgtgaactaaaaagttgatgtataattaaaa |
4657156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 27778328 - 27778379
Alignment:
| Q |
190 |
taatttacgttatttgtgacttatcaattgtcattgaacttccatcatgctt |
241 |
Q |
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|||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
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| T |
27778328 |
taatttacgttacttgtgacttgctaattgccattgaacttccatcatgctt |
27778379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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