View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7810_high_3 (Length: 467)
Name: NF7810_high_3
Description: NF7810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7810_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 112 - 451
Target Start/End: Complemental strand, 29653545 - 29653208
Alignment:
| Q |
112 |
tagcttcaaagtcactccaagataataaccttacacctccaccactcagaatcaaacaaagacattatatatttcattatttaaaaacatcttaaggtaa |
211 |
Q |
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| T |
29653545 |
tagcttcaaagtctctccaagaaaataaccttacacctcaaccactcggaatcaaacaaagacattatat--ttcattatttaaaaacatctcaagataa |
29653448 |
T |
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| Q |
212 |
acatcatcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccatcaaattttcactaagat |
311 |
Q |
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| T |
29653447 |
acaccatcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccctcaaattttcactaagat |
29653348 |
T |
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| Q |
312 |
aaacattacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatccaacttcgctacggtcatagtctttcatataaga |
411 |
Q |
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| T |
29653347 |
aaacattacctcccgtgatatcaagagattcaagaagcggacatcgatcaagaatcgcaagccatccaacttcgctacggtcatagtctttcatataaaa |
29653248 |
T |
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| Q |
412 |
gtggcttagtcgatatactgggtctaaaacactcaacttg |
451 |
Q |
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| T |
29653247 |
gtggcttagtcgatatactgggtctgcaacactcaacttg |
29653208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 179 - 432
Target Start/End: Complemental strand, 29681825 - 29681571
Alignment:
| Q |
179 |
tatatttcattatttaaaaacatcttaaggtaaacatcatcatcataatagtgttcttcaatgtgagc-ccaaactggcagatgcaaaattttgatctgc |
277 |
Q |
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| T |
29681825 |
tatatttcatcatttaaatacatctcaagataaatatgatcatcataatagtgttcttcaatacgagggcctaactgacagccgcaaatttttgatcttc |
29681726 |
T |
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| Q |
278 |
tcacgacacctttccatcaaattttcactaagataaacattacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatc |
377 |
Q |
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| T |
29681725 |
tcatgacacctttccttcaaattttcattaaaataaacattgcctccccgaatgtcaagagattcaagaagcagacatcgatcaagaatcgcaagccatc |
29681626 |
T |
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| Q |
378 |
caacttcgctacggtcatagtctttcatataagagtggcttagtcgatatactgg |
432 |
Q |
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| T |
29681625 |
caacttcgctgcggtcatagtctttcatataaaagtggcttagtcgatacactgg |
29681571 |
T |
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