View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7810_high_7 (Length: 349)

Name: NF7810_high_7
Description: NF7810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7810_high_7
NF7810_high_7
[»] chr1 (4 HSPs)
chr1 (1-207)||(23996777-23996983)
chr1 (258-333)||(2068176-2068251)
chr1 (63-125)||(42785579-42785641)
chr1 (252-317)||(40847515-40847580)
[»] chr5 (9 HSPs)
chr5 (1-143)||(27843195-27843337)
chr5 (252-333)||(27842449-27842530)
chr5 (81-207)||(32251854-32251980)
chr5 (252-333)||(18270773-18270854)
chr5 (254-333)||(34685818-34685897)
chr5 (257-311)||(34430532-34430586)
chr5 (255-333)||(34678670-34678748)
chr5 (254-312)||(34422259-34422317)
chr5 (63-125)||(34177448-34177510)
[»] chr3 (3 HSPs)
chr3 (8-196)||(45967208-45967396)
chr3 (63-125)||(23049861-23049923)
chr3 (71-123)||(4740747-4740799)
[»] chr7 (2 HSPs)
chr7 (69-207)||(25107037-25107175)
chr7 (63-125)||(35515875-35515937)
[»] chr4 (4 HSPs)
chr4 (3-125)||(26169448-26169570)
chr4 (63-125)||(32807723-32807785)
chr4 (68-111)||(13136840-13136883)
chr4 (69-123)||(22495664-22495718)
[»] chr2 (1 HSPs)
chr2 (1-157)||(21578896-21579052)
[»] chr8 (1 HSPs)
chr8 (71-125)||(38738170-38738224)
[»] chr6 (1 HSPs)
chr6 (71-125)||(18673110-18673164)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 23996983 - 23996777
Alignment:
Q  1 attgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaa 100  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||    
T  23996983 attgaacaaaatgatctgccacattagcgggcatgaccgcagatacacctacccaccgataaatatagctccaaacaaagccaaacaaattacaacgtaa 23996884  T
Q  101 aaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacccgacggcataatagattgtccttggtagag 200  Q
    |||||| || ||||||||||||||   |||||||||||||||| || |||| || ||||  |||||||| ||||| || |||||||||||||||||||||    
T  23996883 aaataagtgggaagatgattccacgacaccacatcctcctatacaatattgggcatctatgtcaataactcgacgacagaatagattgtccttggtagag 23996784  T
Q  201 agtctat 207  Q
    |||||||    
T  23996783 agtctat 23996777  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 2068251 - 2068176
Alignment:
Q  258 aaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagat 333  Q
    |||||| ||||| ||||||||  |||||||||| ||| ||||||||||||||||| || ||||| |||||||||||    
T  2068251 aaatagtatattggagaaagcccctgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagat 2068176  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 42785641 - 42785579
Alignment:
Q  63 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 125  Q
    |||| |||||||||||| ||||| | ||||||||| |||||||| |||||||||| |||||||    
T  42785641 atatggttccaaacagatccaaaaatattacaatgaaaaaataagtgagaagatgtttccacc 42785579  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 40847580 - 40847515
Alignment:
Q  252 ttattaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactc 317  Q
    |||||||||||| ||||| || |||||| |||||||||||||| |||| |||||||| ||| ||||    
T  40847580 ttattaaaatagtatattggataaagcacctgcagcaaaaggcatgttttcttttctaaaggactc 40847515  T

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Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27843337 - 27843195
Alignment:
Q  1 attgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27843337 attgaataaaatgatctaacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaataaattacaatgtaa 27843238  T
Q  101 aaataactgagaagatgattccacccaaccacatcctcctata 143  Q
    |||||| || |||||||||||||||   |||||||||||||||    
T  27843237 aaataagtgggaagatgattccacctcgccacatcctcctata 27843195  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 27842530 - 27842449
Alignment:
Q  252 ttattaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagat 333  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  27842530 ttattaaaatagcatattagagaaagcacctgcggcaaaaggcttgttctcttttcttaaggactcagctggagtacaagat 27842449  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 32251980 - 32251854
Alignment:
Q  81 ccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacccgacggcata 180  Q
    ||||| ||||||||||| |||||||| || ||||||| ||||||| ||||||| ||||||| | |||||||||| |||| ||||||||| || ||    |    
T  32251980 ccaaataaattacaatgcaaaaataaatgggaagatgtttccaccaaaccacaccctcctacacaagattgagcttctatatcaataactcgccgatgga 32251881  T
Q  181 atagattgtccttggtagagagtctat 207  Q
    | ||||||||||| |||||||||||||    
T  32251880 aaagattgtccttagtagagagtctat 32251854  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 18270773 - 18270854
Alignment:
Q  252 ttattaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagat 333  Q
    |||||||||||| |||||||| |||||| |||||||||| ||| ||||||||||||||||| | |||||| |||||||||||    
T  18270773 ttattaaaatagtatattagacaaagcacctgcagcaaagggcatgttctcttttcttaaggattcagctggagtacaagat 18270854  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 34685818 - 34685897
Alignment:
Q  254 attaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagat 333  Q
    |||||||||| ||||||||||||||| |||||||||| ||  ||||||||||||||||| ||||| |  |||||||||||    
T  34685818 attaaaatagtatattagagaaagcacctgcagcaaagggtatgttctcttttcttaaggactcaacgggagtacaagat 34685897  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 34430586 - 34430532
Alignment:
Q  257 aaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaa 311  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  34430586 aaaatagtatattagagaaagcacctgcagcaaaaggcatgttctcttttcttaa 34430532  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 34678670 - 34678748
Alignment:
Q  255 ttaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaagtactcagctagagtacaagat 333  Q
    |||||| || ||||| ||||||||| |||||||||| ||  ||||||||||||||||| |||||||| |||||||||||    
T  34678670 ttaaaacagtatattggagaaagcacctgcagcaaagggtatgttctcttttcttaaggactcagctggagtacaagat 34678748  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 34422317 - 34422259
Alignment:
Q  254 attaaaatagcatattagagaaagcatctgcagcaaaaggcttgttctcttttcttaag 312  Q
    |||||| ||| ||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  34422317 attaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaag 34422259  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 34177510 - 34177448
Alignment:
Q  63 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 125  Q
    |||||||||||||| || ||||| ||||||||||| || ||||| |||||||||| |||||||    
T  34177510 atatagttccaaactgaaccaaaaaaattacaatgaaataataagtgagaagatgtttccacc 34177448  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 45967208 - 45967396
Alignment:
Q  8 aaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaaaaataac 107  Q
    ||||||||||| ||||||| | |||||  ||||| | ||||| | ||||   || ||||  ||||||||| ||||||| ||| ||||||||||||||||     
T  45967208 aaaatgatctgccacattatcaggcatctccgcataaacaccaatccactagtaaatatgattccaaacatagccaaataaactacaatgtaaaaataag 45967307  T
Q  108 tgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacccgacggcataatagattgtccttggt 196  Q
    |||| ||||| ||| ||| ||||||| ||||||| | |||||||||| |||| |||||| |  ||||| |  || ||||||||||||||    
T  45967308 tgaggagatgtttcgaccaaaccacaacctcctacacaagattgagcttctacatcaatgattcgacgacgaaagagattgtccttggt 45967396  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 23049923 - 23049861
Alignment:
Q  63 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 125  Q
    |||| ||| |||||||| ||||||||||||||||||||||| |  |||||||||  |||||||    
T  23049923 atatggtttcaaacagacccaaacaaattacaatgtaaaaaaaggtgagaagatatttccacc 23049861  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 4740799 - 4740747
Alignment:
Q  71 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattcca 123  Q
    ||||||||| ||||| |||||||||||||||||||| ||   |||||||||||    
T  4740799 ccaaacagatccaaaaaaattacaatgtaaaaataagtgttgagatgattcca 4740747  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 25107037 - 25107175
Alignment:
Q  69 ttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataa 168  Q
    ||||||||| ||||||| |||||||| ||||||||||| || | ||||| ||| ||| ||||||| ||||||| | |||||||||| |||| |||||| |    
T  25107037 ttccaaacacagccaaataaattacagtgtaaaaataagtgtggagatgtttcgaccaaaccacaacctcctacacaagattgagcttctacatcaatga 25107136  T
Q  169 cccgacggcataatagattgtccttggtagagagtctat 207  Q
      ||||| |  || |||||||||||||| || |||||||    
T  25107137 ttcgacgacgaaagagattgtccttggtcgatagtctat 25107175  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 35515937 - 35515875
Alignment:
Q  63 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 125  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |  |||||||||| |||||||    
T  35515937 atatggttccaaatagagccaaacaaaatacaatgtaaaaaaaggtgagaagatgtttccacc 35515875  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 26169448 - 26169570
Alignment:
Q  3 tgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaaaa 102  Q
    ||||||||||||||   ||||  ||| ||||| |||| ||| ||||||| |||| || | ||||  | ||||||||||||||| ||||||||||||||||    
T  26169448 tgaataaaatgatcaaccacaacagcaggcattaccgtagacacacctagccactgaaagatatgatgccaaacagagccaaataaattacaatgtaaaa 26169547  T
Q  103 ataactgagaagatgattccacc 125  Q
    |||| |||||| ||| |||||||    
T  26169548 ataagtgagaatatgtttccacc 26169570  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 32807723 - 32807785
Alignment:
Q  63 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 125  Q
    |||| |||||||||||| ||||| | |||||||||||||||||| |||||| ||| |||||||    
T  32807723 atatggttccaaacagacccaaaaacattacaatgtaaaaataagtgagaatatgtttccacc 32807785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 13136883 - 13136840
Alignment:
Q  68 gttccaaacagagccaaacaaattacaatgtaaaaataactgag 111  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  13136883 gttccaaacagagccaaaaagattacaatgtaaaaataaatgag 13136840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 22495664 - 22495718
Alignment:
Q  69 ttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattcca 123  Q
    ||||||||||| ||||| |||| ||||||||||||||  |||||||||| |||||    
T  22495664 ttccaaacagaaccaaaaaaatcacaatgtaaaaatagatgagaagatgtttcca 22495718  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 21578896 - 21579052
Alignment:
Q  1 attgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaa 100  Q
    |||||| |||||||||   ||||||| | ||||| |||| ||| ||||| | |||||  || |||| |||||||||| ||||| | ||| ||||||||||    
T  21578896 attgaaaaaaatgatccaccacattaacaggcataaccgtagaaacaccaatccacctgtaaatatggttccaaacacagccatagaaactacaatgtaa 21578995  T
Q  101 aaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctc 157  Q
    |||||| || ||||||| ||| ||| | || || ||||||| | |||||||||||||    
T  21578996 aaataagtgtgaagatgtttctaccaagccgcaacctcctacacaagattgagcctc 21579052  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 38738224 - 38738170
Alignment:
Q  71 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 125  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  38738224 ccaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 38738170  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 18673164 - 18673110
Alignment:
Q  71 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 125  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  18673164 ccaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 18673110  T

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