View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7810_low_11 (Length: 284)
Name: NF7810_low_11
Description: NF7810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7810_low_11 |
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| [»] scaffold1374 (1 HSPs) |
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| [»] scaffold0590 (1 HSPs) |
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| [»] scaffold1902 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 4955991 - 4955723
Alignment:
| Q |
7 |
catttagataacatttatatatttagattaactgctagattgccaccttacggtttccaaaagaaagtg--ggcttgttcactagttgtctctttggaag |
104 |
Q |
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| T |
4955991 |
catttagataacatttatatatttagattaactgctagattgccaccttacggtttccaaaagaaaatgctggctagttcactagttgtctctttggaag |
4955892 |
T |
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| Q |
105 |
ctttgccaatgcagaaaaggtatcatggaa-tccatacctaacactttggattattcaattttgttctctttaattcttatcctttatgtcgttatgcaa |
203 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955891 |
ctttgccaatgcagaaaaggtatcatggaaattcatacctaacactttggattattcaattttgttctctttaattcttatcctttatgtcgttatgcaa |
4955792 |
T |
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| Q |
204 |
ctactaaattaacatgttctgtagtcataagctaactttttgtgtcgtttatgaatatacgtaggattc |
272 |
Q |
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| T |
4955791 |
ctactaaattaacatgttctgtagtcataagctaactttttgcgtagtttatgaatatacgtaggattc |
4955723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1374 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold1374
Description:
Target: scaffold1374; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 217 - 1
Alignment:
| Q |
7 |
catttagataacatttatatatttagattaactgctagatt-----gccaccttacggtttccaaaagaaagtg--ggcttgttcactagttgtctcttt |
99 |
Q |
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| T |
217 |
catttagataacatttatatatttagattaactgctagattagattgccaccttacggtttccaaaagaaaatgctggctagttcactagttgtctcttt |
118 |
T |
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| Q |
100 |
ggaagctttgccaatgcagaaaaggtatcatggaa-tccatacctaacactttggattattcaattttgttctctttaattcttatcctttatgtcgtta |
198 |
Q |
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| T |
117 |
ggaagctttgccaatgcagaaaaggtatcatggaaattcatacctaacactttggattattcaattttgttctctttaattcttatcctttatgtcgtta |
18 |
T |
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| Q |
199 |
tgcaactactaaattaa |
215 |
Q |
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| T |
17 |
tgcaactactaaattaa |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 3627 - 3843
Alignment:
| Q |
7 |
catttagataacatttatatatttagattaactgctagatt-----gccaccttacggtttccaaaagaaagtg--ggcttgttcactagttgtctcttt |
99 |
Q |
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| T |
3627 |
catttagataacatttatatatttagattaactgctagattagattgccaccttacggtttccaaaagaaaatgctggctagttcactagttgtctcttt |
3726 |
T |
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| Q |
100 |
ggaagctttgccaatgcagaaaaggtatcatggaa-tccatacctaacactttggattattcaattttgttctctttaattcttatcctttatgtcgtta |
198 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3727 |
ggaagctttgccaatgcagaaaaggtatcatggaaattcatacctaacactttggattattcaattttgttctctttaattcttatcctttatgtcgtta |
3826 |
T |
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| Q |
199 |
tgcaactactaaattaa |
215 |
Q |
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||||||||||||||||| |
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| T |
3827 |
tgcaactactaaattaa |
3843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1902 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1902
Description:
Target: scaffold1902; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 36 - 1
Alignment:
| Q |
7 |
catttagataacatttatatatttagattaactgct |
42 |
Q |
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| T |
36 |
catttagataacatttatatatttagattaactgct |
1 |
T |
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