View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7810_low_5 (Length: 434)

Name: NF7810_low_5
Description: NF7810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7810_low_5
NF7810_low_5
[»] chr7 (28 HSPs)
chr7 (226-429)||(19735503-19735706)
chr7 (207-354)||(17503245-17503392)
chr7 (96-354)||(17549822-17550080)
chr7 (233-327)||(1964227-1964321)
chr7 (212-318)||(8352633-8352738)
chr7 (207-296)||(2842562-2842651)
chr7 (99-346)||(8515440-8515686)
chr7 (97-299)||(1837760-1837961)
chr7 (307-432)||(583889-584013)
chr7 (207-295)||(8488713-8488801)
chr7 (195-298)||(48294026-48294132)
chr7 (187-296)||(584070-584182)
chr7 (209-298)||(25173480-25173569)
chr7 (207-296)||(44592100-44592189)
chr7 (207-298)||(27399762-27399853)
chr7 (207-295)||(38974813-38974900)
chr7 (220-298)||(21294841-21294919)
chr7 (207-296)||(48557962-48558050)
chr7 (183-298)||(48767846-48767964)
chr7 (207-298)||(8055305-8055396)
chr7 (97-146)||(19735787-19735836)
chr7 (229-296)||(43786686-43786753)
chr7 (293-430)||(2842379-2842520)
chr7 (298-348)||(48767475-48767525)
chr7 (221-298)||(3641570-3641647)
chr7 (96-173)||(17503134-17503211)
chr7 (304-368)||(27399428-27399492)
chr7 (326-397)||(36452258-36452330)
[»] chr6 (12 HSPs)
chr6 (207-426)||(29465298-29465515)
chr6 (99-364)||(27753002-27753267)
chr6 (207-397)||(31766425-31766612)
chr6 (207-298)||(6812053-6812144)
chr6 (207-299)||(12919069-12919161)
chr6 (295-434)||(6811347-6811486)
chr6 (207-258)||(17096023-17096074)
chr6 (295-369)||(10373875-10373949)
chr6 (295-380)||(28188005-28188089)
chr6 (233-296)||(19687610-19687673)
chr6 (295-380)||(24326049-24326134)
chr6 (121-173)||(6812177-6812229)
[»] scaffold0110 (5 HSPs)
scaffold0110 (16-173)||(21924-22081)
scaffold0110 (202-307)||(13663-13769)
scaffold0110 (202-307)||(21400-21506)
scaffold0110 (340-434)||(13585-13670)
scaffold0110 (340-434)||(21322-21407)
[»] chr1 (32 HSPs)
chr1 (260-432)||(5939688-5939859)
chr1 (207-434)||(28522879-28523105)
chr1 (207-349)||(46688759-46688899)
chr1 (251-434)||(50011719-50011903)
chr1 (296-434)||(15456740-15456878)
chr1 (207-341)||(26991775-26991914)
chr1 (207-296)||(30627134-30627223)
chr1 (207-296)||(45467983-45468072)
chr1 (221-298)||(23082429-23082506)
chr1 (207-296)||(49650119-49650208)
chr1 (207-298)||(6597462-6597553)
chr1 (207-298)||(27163054-27163145)
chr1 (207-271)||(39092967-39093031)
chr1 (293-432)||(47677021-47677160)
chr1 (295-432)||(45370780-45370919)
chr1 (207-341)||(35718836-35718975)
chr1 (233-299)||(38790605-38790671)
chr1 (293-432)||(1834817-1834956)
chr1 (295-368)||(27163173-27163246)
chr1 (207-298)||(2356231-2356323)
chr1 (295-365)||(13004224-13004294)
chr1 (295-397)||(39092820-39092922)
chr1 (295-368)||(18898275-18898348)
chr1 (221-258)||(22767175-22767212)
chr1 (293-380)||(12705325-12705412)
chr1 (307-434)||(26991921-26992045)
chr1 (295-347)||(31437064-31437116)
chr1 (229-281)||(37586495-37586547)
chr1 (295-354)||(52898403-52898462)
chr1 (238-296)||(47675909-47675967)
chr1 (219-288)||(44343422-44343491)
chr1 (208-241)||(50011647-50011680)
[»] chr2 (26 HSPs)
chr2 (207-370)||(25749880-25750042)
chr2 (207-366)||(42029584-42029742)
chr2 (295-432)||(21848576-21848713)
chr2 (295-432)||(37847265-37847402)
chr2 (266-350)||(27957498-27957582)
chr2 (207-298)||(21848228-21848319)
chr2 (290-432)||(39446166-39446308)
chr2 (207-299)||(37456044-37456136)
chr2 (221-281)||(44059281-44059341)
chr2 (221-298)||(2968869-2968946)
chr2 (208-296)||(10624826-10624914)
chr2 (207-299)||(27559033-27559125)
chr2 (207-380)||(28967600-28967776)
chr2 (222-298)||(37847690-37847766)
chr2 (219-298)||(3703501-3703580)
chr2 (207-298)||(12671787-12671878)
chr2 (226-296)||(12863601-12863671)
chr2 (183-271)||(11916161-11916247)
chr2 (207-296)||(12184735-12184823)
chr2 (295-380)||(19140982-19141067)
chr2 (295-379)||(2969198-2969282)
chr2 (295-377)||(12671677-12671759)
chr2 (291-367)||(12184619-12184695)
chr2 (96-271)||(39446348-39446521)
chr2 (333-397)||(12016184-12016248)
chr2 (326-366)||(3703897-3703937)
[»] chr4 (35 HSPs)
chr4 (207-424)||(37450695-37450915)
chr4 (207-396)||(56397091-56397280)
chr4 (187-346)||(44991744-44991911)
chr4 (97-299)||(13678514-13678715)
chr4 (207-296)||(12191524-12191613)
chr4 (209-298)||(38068088-38068177)
chr4 (187-296)||(51175526-51175638)
chr4 (221-298)||(36904174-36904251)
chr4 (307-432)||(51175345-51175469)
chr4 (207-299)||(5744804-5744896)
chr4 (207-298)||(27064454-27064545)
chr4 (207-298)||(27085558-27085649)
chr4 (219-343)||(4711545-4711665)
chr4 (195-297)||(38168122-38168227)
chr4 (187-341)||(38068459-38068627)
chr4 (220-346)||(40445712-40445843)
chr4 (187-291)||(17058793-17058900)
chr4 (295-380)||(36622281-36622366)
chr4 (223-299)||(13665782-13665858)
chr4 (212-434)||(31767838-31768057)
chr4 (212-299)||(30482923-30483010)
chr4 (208-397)||(45832132-45832322)
chr4 (265-368)||(49551789-49551892)
chr4 (221-298)||(19853994-19854071)
chr4 (295-432)||(38067670-38067807)
chr4 (307-432)||(38068328-38068452)
chr4 (338-432)||(4711311-4711403)
chr4 (293-397)||(40445623-40445725)
chr4 (208-298)||(56228205-56228294)
chr4 (232-288)||(34929264-34929320)
chr4 (295-353)||(27064573-27064631)
chr4 (295-353)||(27085677-27085735)
chr4 (100-173)||(37450946-37451019)
chr4 (304-348)||(36456510-36456554)
chr4 (304-380)||(56228562-56228637)
[»] chr3 (35 HSPs)
chr3 (183-380)||(25701529-25701729)
chr3 (207-380)||(47142675-47142848)
chr3 (207-379)||(46981748-46981920)
chr3 (208-298)||(1559590-1559680)
chr3 (207-298)||(31833957-31834048)
chr3 (207-298)||(32552306-32552397)
chr3 (263-380)||(32721914-32722031)
chr3 (290-397)||(1559900-1560007)
chr3 (97-299)||(23059103-23059304)
chr3 (187-296)||(19611149-19611261)
chr3 (221-298)||(1151610-1151687)
chr3 (295-430)||(38585784-38585919)
chr3 (207-296)||(55222401-55222490)
chr3 (299-430)||(1292033-1292164)
chr3 (97-258)||(38585977-38586138)
chr3 (212-298)||(37526766-37526851)
chr3 (244-313)||(7325564-7325633)
chr3 (307-432)||(19610967-19611091)
chr3 (266-343)||(40242606-40242684)
chr3 (212-297)||(14903368-14903453)
chr3 (295-432)||(28131159-28131296)
chr3 (97-281)||(28131342-28131526)
chr3 (209-253)||(1294572-1294616)
chr3 (207-297)||(5992202-5992285)
chr3 (96-144)||(40243198-40243246)
chr3 (218-297)||(3935755-3935834)
chr3 (207-294)||(13778185-13778271)
chr3 (333-432)||(35540547-35540646)
chr3 (207-254)||(48098387-48098434)
chr3 (293-370)||(48098288-48098365)
chr3 (295-397)||(33428690-33428792)
chr3 (326-432)||(1151987-1152093)
chr3 (293-397)||(1292415-1292517)
chr3 (293-430)||(3935875-3936011)
chr3 (97-146)||(47142901-47142950)
[»] chr8 (19 HSPs)
chr8 (98-298)||(7176952-7177152)
chr8 (207-404)||(1581377-1581578)
chr8 (96-298)||(22800462-22800667)
chr8 (207-348)||(14523171-14523316)
chr8 (207-298)||(11989717-11989808)
chr8 (298-369)||(45251232-45251303)
chr8 (221-295)||(12795955-12796029)
chr8 (295-434)||(13281960-13282097)
chr8 (295-431)||(29637882-29638018)
chr8 (295-369)||(7177375-7177449)
chr8 (295-432)||(12796294-12796429)
chr8 (295-432)||(22800695-22800830)
chr8 (207-298)||(8693032-8693123)
chr8 (207-257)||(5423517-5423567)
chr8 (207-296)||(12532328-12532417)
chr8 (233-341)||(43976594-43976707)
chr8 (207-297)||(13282128-13282221)
chr8 (295-370)||(41438096-41438171)
chr8 (307-430)||(14523317-14523439)
[»] chr5 (16 HSPs)
chr5 (212-333)||(4898156-4898278)
chr5 (207-298)||(31066332-31066423)
chr5 (208-298)||(565353-565443)
chr5 (295-432)||(2552655-2552790)
chr5 (187-298)||(31046367-31046481)
chr5 (207-298)||(4396221-4396312)
chr5 (99-173)||(4740334-4740408)
chr5 (207-297)||(8516926-8517016)
chr5 (208-257)||(15958740-15958789)
chr5 (295-369)||(12883523-12883597)
chr5 (207-298)||(12883183-12883274)
chr5 (210-298)||(30312968-30313056)
chr5 (233-298)||(30350411-30350476)
chr5 (221-295)||(2553196-2553270)
chr5 (295-368)||(4395654-4395727)
chr5 (307-432)||(15958862-15958986)
[»] scaffold0568 (1 HSPs)
scaffold0568 (187-291)||(726-833)
[»] scaffold0007 (1 HSPs)
scaffold0007 (295-432)||(175217-175354)
[»] scaffold0086 (2 HSPs)
scaffold0086 (221-296)||(33242-33317)
scaffold0086 (299-432)||(33569-33701)
[»] scaffold0020 (1 HSPs)
scaffold0020 (219-296)||(11490-11567)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 226 - 429
Target Start/End: Complemental strand, 19735706 - 19735503
Alignment:
Q  226 taataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttgcaagtgggaccaaccaa 325  Q
    ||||||||| ||||||  ||| ||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||     
T  19735706 taataaggaatccaataaaaagtacttaaataggtctcactaactttatatcattatacaaaaataatttattacttcttttacaagtgagaccaaccag 19735607  T
Q  326 tacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatg-tccttatatagttccccgttgcataatagagactcatttt 424  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| |  ||||| |||||||||||||||||    
T  19735606 tacatattttattacttcttttacacgtcggacccgttagttgcccatgagagag-atgatccttatatagttgcatgttgcttaatagagactcatttt 19735508  T
Q  425 ttctt 429  Q
    |||||    
T  19735507 ttctt 19735503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 207 - 354
Target Start/End: Original strand, 17503245 - 17503392
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  17503245 gactccaatgacaatacactaataaggactccaataaaaaatacttaaataagtcccagtaactttacataattatacaaaaataatttattacttcttt 17503344  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtg 354  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  17503345 tgcaagtgggaccaaccagtacatagtttattacttcttttacacgtg 17503392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 17550080 - 17549822
Alignment:
Q  96 cttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagct 195  Q
    |||| |||||||| ||||  |||| |||||||  |||||||||||||||||  || || | |||||||||||||||||         ||||||| ||  |    
T  17550080 cttaaagcatccagaatgacagtccactaataaggacttcttaaatggaccccacgtgaacacatcacttatttataa---ttttttaatgaaattacat 17549984  T
Q  196 attaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataa 292  Q
    ||||| || ||   |||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||| ||||||||||| |||||| ||||||||    
T  17549983 attaaggattcaatgactccaatgacaatacactaataaggactccaataaaaaatacttaaataagtcccagtaactttacataattatacaaaaataa 17549884  T
Q  293 tttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtg 354  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  17549883 tttattacttcttttgcaagtgggaccaaccagtacatagtttattacttcttttacacgtg 17549822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 1964227 - 1964321
Alignment:
Q  233 gactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttgcaagtgggaccaaccaata 327  Q
    |||||||||  ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  1964227 gactccaataaaaagtatttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttacaagtgtgaccaaccaata 1964321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 8352738 - 8352633
Alignment:
Q  212 caatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttgcaa 311  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||  || ||||||||||||||||||| | ||||| || ||||||||||||||| ||    
T  8352738 caatgacaatacactaataaggacttcaatgaaaaatacttaaataagtctcactaactttacatcatta-aaaaaaaaaaattattacttcttttgaaa 8352640  T
Q  312 gtgggac 318  Q
     ||||||    
T  8352639 atgggac 8352633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 2842651 - 2842562
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||  |||||||| || |||||||||| | ||||||||||||    
T  2842651 gactccaatgacaatacactaataaggactccaatgaaaaatatttaaatatgtcccactatctgtacatcattaaacaaaaataattta 2842562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 346
Target Start/End: Original strand, 8515440 - 8515686
Alignment:
Q  99 agagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagctatt 198  Q
    |||||||||| |||||||||   ||||||  |||||||||||||||||  || || | |||||||||||||||||         ||| |||||| |||||    
T  8515440 agagcatccacaatggtagttctctaataaggacttcttaaatggaccccacgtg-acacatcacttatttataattttt----aataaaagtacctatt 8515534  T
Q  199 aaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattt 295  Q
    || || ||   |||||||||| |||||||||||||||||||| |||  ||||||||||||||  |||||||  ||||||||||||| | |||||||||||    
T  8515535 aaggattcaatgactccaatggcaatacactaataaggactcgaataaaaaatacttaaatatgtcccactgtctttacatcattaaacaaaaataattt 8515634  T
Q  296 attacttc-ttttgcaagtgggaccaaccaatacatattttattacttcttt 346  Q
       ||| | |||| |||||||||||||  |||||| ||||||||||| ||||    
T  8515635 tccactcctttttacaagtgggaccaagtaatacacattttattactccttt 8515686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 97 - 299
Target Start/End: Complemental strand, 1837961 - 1837760
Alignment:
Q  97 ttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagcta 196  Q
    ||||||||||||||||||||||    ||||||||||| ||||||||||||  || | || || ||||||||||||||         ||| ||||||  ||    
T  1837961 ttagagcatccataatggtagttccttaatagagactccttaaatggaccccacgt-tacacgtcacttatttataatatatt---aataaaagtactta 1837866  T
Q  197 ttaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataat 293  Q
    ||||||||||   ||||||||||||||||||||||||||||||| |||  ||| ||||||||||   |||||||||||| |||||||| | |||| ||||    
T  1837865 ttaaagactcaatgactccaatgacaatacactaataaggactcaaataaaaagtacttaaatatgccccactaactttgcatcattaaacaaaagtaat 1837766  T
Q  294 ttatta 299  Q
    ||||||    
T  1837765 ttatta 1837760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 307 - 432
Target Start/End: Complemental strand, 584013 - 583889
Alignment:
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    |||||||||||||||  | ||||||||||||||||| ||||| ||||| |||||||||||| |||| |||||||   |||||||||||||| |||||| |    
T  584013 tgcaagtgggaccaagtagtacatattttattactt-ttttaaacgtgggacccgttagttacccaggagagagagggtccttatatagttgcccgttcc 583915  T
Q  407 ataatagagactcattttttcttcct 432  Q
     |||  | ||||||||||||||||||    
T  583914 ttaagggggactcattttttcttcct 583889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 8488713 - 8488801
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattt 295  Q
    |||||||||| ||||||||||||||||||| ||||  ||||||||||||||  |||||||| ||||||||||||| | |||||||||||    
T  8488713 gactccaatggcaatacactaataaggacttcaataaaaaatacttaaatatgtcccactatctttacatcattaaacaaaaataattt 8488801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 48294026 - 48294132
Alignment:
Q  195 tattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaata 291  Q
    ||||||||||||   ||||||||||  | |||||||||||||||||||||| ||| ||  ||||||| |||||||||||||||||||||| | |||||||    
T  48294026 tattaaagactcattgactccaatggaagtacactaataaggactccaatgtaaagtatctaaataggtcccactaactttacatcattaaacaaaaata 48294125  T
Q  292 atttatt 298  Q
    |||||||    
T  48294126 atttatt 48294132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 584182 - 584070
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattata 283  Q
    |||||| ||||||| |||||   |||||||||| ||||||||||| || |||||||||| ||| ||||||||||  || ||||| ||||||||||||| |    
T  584182 aaagtatctattaaggactcaatgactccaatggcaatacactaacaaagactccaatgaaaagtacttaaatatgtctcactatctttacatcattaaa 584083  T
Q  284 taaaaataattta 296  Q
     ||||||||||||    
T  584082 caaaaataattta 584070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 25173569 - 25173480
Alignment:
Q  209 ctccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||| |  ||||| |||| ||| ||||||||||| || |||||| |||||||||||||| |||| |||||||||    
T  25173569 ctccaatgacaatacactaacagtgactcaaatgaaaagtacttaaataggtctcactaattttacatcattatacaaaagtaatttatt 25173480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 44592189 - 44592100
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    ||||||||| ||||||||||||||||||||| |||| ||| ||||||||||  ||||| || ||||||||||||| | || |||||||||    
T  44592189 gactccaataacaatacactaataaggactctaatgaaaagtacttaaatatgtcccattatctttacatcattaaacaacaataattta 44592100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 27399853 - 27399762
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||||| |  |||||||||| ||| || |||||||| | |||||| ||||||||||||||  |||| |||||||||    
T  27399853 gactccaatgacaatacactaacattgactccaatgaaaagtaattaaataggttccactacctttacatcattatgcaaaagtaatttatt 27399762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 38974813 - 38974900
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattt 295  Q
    ||||||||||| | ||||||||||||||||| || | ||| |||||||||||  ||||||||| ||||||||||| | |||||||||||    
T  38974813 gactccaatgagagtacactaataaggactctaaagaaaagtacttaaataggccccactaac-ttacatcattaaacaaaaataattt 38974900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 21294919 - 21294841
Alignment:
Q  220 atacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||| |||||||||  |||||| |||||||  ||| |||||||||||||||||| | | ||||||||||||    
T  21294919 atacactaataaagactccaattaaaaatatttaaatatgtcctactaactttacatcattaaacacaaataatttatt 21294841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 48558050 - 48557962
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    ||||||||||| |||||| |||||| || ||||||| ||| |||||||||| ||| ||||| ||||||||||||  | ||||||||||||    
T  48558050 gactccaatgagaatacattaataatgagtccaatgaaaagtacttaaata-atcgcactatctttacatcattgaacaaaaataattta 48557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 298
Target Start/End: Complemental strand, 48767964 - 48767846
Alignment:
Q  183 aatgaaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcat 279  Q
    |||||||||  ||||||| |||||   ||||||||||  ||||||| || | ||||||||||| ||| | ||||||||  || |||||||||||||||||    
T  48767964 aatgaaagttcctattaaggactcaatgactccaatggtaatacaccaacagggactccaatgaaaagtgcttaaatatgtctcactaactttacatcat 48767865  T
Q  280 tatataaaaataatttatt 298  Q
    |||| |||| |||| ||||    
T  48767864 tatacaaaagtaatatatt 48767846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 8055305 - 8055396
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||||| ||||| |   ||  ||| |  |||||||| || ||||||||||||||||||| |||||| |||||||||    
T  8055305 gactccaatgacaatacactaacaaggaatatgataaaaagtgattaaataggtctcactaactttacatcattacataaaagtaatttatt 8055396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 19735836 - 19735787
Alignment:
Q  97 ttagagcatccataatggtagtctactaatagagacttcttaaatggacc 146  Q
    |||||| ||||| |||||||||| ||||||||||||| ||||||||||||    
T  19735836 ttagagtatccacaatggtagtccactaatagagactccttaaatggacc 19735787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 43786753 - 43786686
Alignment:
Q  229 taaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||||| | ||| ||||||||||  || ||||| ||||||||||||| | ||||||||||||    
T  43786753 taaggactccaaagaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataattta 43786686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 430
Target Start/End: Complemental strand, 2842520 - 2842379
Alignment:
Q  293 tttattacttcttt-tgcaagtgggaccaaccaatacatattttatta-cttcttttacacgtgtgacccgttagttgccca--tgagagagcatgtcct 388  Q
    ||||||||| |||| |||||||||||||||  | |||||||||||||| ||| ||||| ||||| ||||||||| || |  |   ||||||| |  ||||    
T  2842520 tttattactcctttatgcaagtgggaccaagtagtacatattttattacctttttttaaacgtgggacccgttaattacttaggagagagagaagatcct 2842421  T
Q  389 tatatagttccccgttgcataatagagactcattttttcttc 430  Q
    |||||||||  ||||| | ||| || ||||||||||||||||    
T  2842420 tatatagttgtccgttccttaacagggactcattttttcttc 2842379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 48767525 - 48767475
Alignment:
Q  298 tacttcttttgcaagtgggaccaaccaatacatattttattacttctttta 348  Q
    ||||||||| | |||||||||||||   |||||||||||||||||||||||    
T  48767525 tacttctttcgaaagtgggaccaacttgtacatattttattacttctttta 48767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 3641647 - 3641570
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||| |||| ||||  ||| |||||||||| | ||||||||| ||| | ||||| | ||||||||||||||    
T  3641647 tacactaataaagacttcaattaaaagtacttaaataaaccccactaacattatagcattaaacaaaaataatttatt 3641570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 17503134 - 17503211
Alignment:
Q  96 cttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataa 173  Q
    |||| |||||||| ||||  |||| |||||||  |||||||||||||||||  || || | |||||||||||||||||    
T  17503134 cttaaagcatccagaatgacagtccactaataaggacttcttaaatggaccccacgtgaacacatcacttatttataa 17503211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 27399492 - 27399428
Alignment:
Q  304 ttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttg 368  Q
    |||||||||| |||||||  |||| || ||||||||||||||||| ||| |||||  ||||||||    
T  27399492 ttttgcaagtaggaccaattaatatatcttttattacttcttttaaacgcgtgacttgttagttg 27399428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 36452330 - 36452258
Alignment:
Q  326 tacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcat-gtccttatatagtt 397  Q
    ||||||||||||| ||||||||||||||| |  |||||||||  | ||||||||  || ||||||||||||||    
T  36452330 tacatattttattgcttcttttacacgtggggtccgttagttatcaatgagagaaaatggtccttatatagtt 36452258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 207 - 426
Target Start/End: Original strand, 29465298 - 29465515
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    ||||| ||||||||| ||||||||| |||||||||| ||||| |||||||||||| |||||| |||||||||||||| |||| || ||||||| ||||||    
T  29465298 gactcaaatgacaattcactaataatgactccaatgaaaaattcttaaatagatctcactaagtttacatcattatacaaaattagtttattatttcttt 29465397  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    || ||||  ||||||||| |||||||||||| |||||||||||||||| | |||||||||||||||||||||||   |||||||||||||| | ||||||    
T  29465398 tgtaagttagaccaaccagtacatattttatcacttcttttacacgtgaggcccgttagttgcccatgagagag--agtccttatatagttgctcgttgc 29465495  T
Q  407 ataatagagactcatttttt 426  Q
     ||| |||||||||||||||    
T  29465496 ttaacagagactcatttttt 29465515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 364
Target Start/End: Original strand, 27753002 - 27753267
Alignment:
Q  99 agagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagctatt 198  Q
    ||||||| |||| |||||||||||||||||||||| ||||||| || |  ||||||| | |||||||||||||||         ||| |||||| |||||    
T  27753002 agagcattcatagtggtagtctactaatagagactccttaaatagatctcacatgtacatatcacttatttataatttttt---aataaaagtacctatt 27753098  T
Q  199 aaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattt 295  Q
    || || ||   ||||| |||| |||||||||||||||||||| |||| ||| ||||||||||  |||||||||||||||| ||||| | |||| ||||||    
T  27753099 aaggattcaatgactcaaatgtcaatacactaataaggactcaaatgaaaagtacttaaataagtcccactaactttacaacattaaacaaaactaattt 27753198  T
Q  296 attacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgtta 364  Q
    ||||||||||||||||||| || |||  | ||||||||||||||||||||||| ||||| || ||||||    
T  27753199 attacttcttttgcaagtgagatcaaatagtacatattttattacttcttttaaacgtgagatccgtta 27753267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 207 - 397
Target Start/End: Original strand, 31766425 - 31766612
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    ||||| |||||||||||||||||||| ||||||||  | | ||||||||||||||||||||||||||||| |||||| |||||| |||||| |||| |||    
T  31766425 gactcaaatgacaatacactaataag-actccaataaagagtacttaaatagatcccactaactttacattattatacaaaaattatttataacttattt 31766523  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagtt 397  Q
    || ||||| ||| ||||  |||||||||||||||||||||||||| ||  ||||||| ||| |||||||||||| |  |||||||||||||    
T  31766524 tgtaagtgagactaacccgtacatattttattacttcttttacacatggaacccgttggtttcccatgagagagaa--tccttatatagtt 31766612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 6812144 - 6812053
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||| |||||||||||||| |||||||||| ||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||    
T  6812144 gactccaatggcaatacactaataaagactccaatgaaaagtacttaaataggttccactaactttacatcattatacaaaaataatttatt 6812053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 12919161 - 12919069
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta 299  Q
    |||||||||| ||||||||||||||||| || |||| ||||||||||||||   |||||||||||| | | |||| | |||||||||||||||    
T  12919161 gactccaatggcaatacactaataaggattcaaatgaaaaatacttaaatatgccccactaactttgccttattaaacaaaaataatttatta 12919069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 434
Target Start/End: Complemental strand, 6811486 - 6811347
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||| |||| ||||||| || ||| |||||||||||||||  |||||||| || ||  |||||||||||| ||| ||||||    |||||||||||    
T  6811486 tattacttattttacaagtggaacaaactaatacatattttattttttcttttaaacatgatacccgttagttgtccaagagagaaagggtccttatata 6811387  T
Q  395 gttccccgttgcataatagagactcattttttcttccttc 434  Q
    |||    ||||  |||||| ||||||||||||||||||||    
T  6811386 gttgtatgttgtctaatagggactcattttttcttccttc 6811347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 17096023 - 17096074
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatag 258  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  17096023 gactccaatgacaatacactaataaggacttcaatgaaaagtacttaaatag 17096074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 10373875 - 10373949
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgc 369  Q
    ||||| |||||||| ||||| |||||||   ||||||||||||||||||||||| ||||||||| | ||||||||    
T  10373875 tattatttcttttgaaagtgagaccaacatgtacatattttattacttcttttaaacgtgtgacacattagttgc 10373949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 28188089 - 28188005
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
    |||||||||||||| |||||  ||||||   |||||||||||||||||||||||  | || |||||||||||||| || |||||||    
T  28188089 tattacttcttttgaaagtga-accaacttgtacatattttattacttcttttaagcatgagacccgttagttgctcaagagagag 28188005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 19687673 - 19687610
Alignment:
Q  233 gactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||| ||| ||||||||||  ||||| || ||||||||||||| | ||||||||||||    
T  19687673 gactccaatgaaaagtacttaaatatgtcccagtatctttacatcattaaacaaaaataattta 19687610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 24326134 - 24326049
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
    ||||| |||||||| | |||||| ||   ||||||||||||||||||||||||| | ||| || ||||||||| || | |||||||    
T  24326134 tattatttcttttgtacgtgggatcatataatacatattttattacttcttttaaatgtgggatccgttagttacctaggagagag 24326049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 6812229 - 6812177
Alignment:
Q  121 actaatagagacttcttaaatggaccatacatgtaaacatcacttatttataa 173  Q
    ||||||||||  ||||||||||||||| ||||||| | |||| ||||||||||    
T  6812229 actaatagaggtttcttaaatggaccacacatgtacatatcatttatttataa 6812177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 22081 - 21924
Alignment:
Q  16 attccaatactacccttttgtttttcctnnnnnnnccacaatcatcaccataaaaacatcaaaacaaattgaataaaccacttagagcatccataatggt 115  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22081 attccaatactacccttttgtttttcctaaaaaaaccacaatcatcaccataaaaacatcaaaacaaattgaataaaccacttagagcatccacaatggt 21982  T
Q  116 agtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataa 173  Q
    | || ||||| ||||||||||| |||||||||||||| || |||||||||||||||||    
T  21981 aatccactaacagagacttcttcaatggaccatacatatatacatcacttatttataa 21924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 13769 - 13663
Alignment:
Q  202 gactcgactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta-c 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |    
T  13769 gactcgactccaatgacaatacactaataaggattccaatggaaaatatttaaataggtcccactaactttacatcattatataaaaataatctattagc 13670  T
Q  301 ttctttt 307  Q
    |||||||    
T  13669 ttctttt 13663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 21506 - 21400
Alignment:
Q  202 gactcgactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta-c 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |    
T  21506 gactcgactccaatgacaatacactaataaggattccaatggaaaatatttaaataggtcccactaactttacatcattatataaaaataatctattagc 21407  T
Q  301 ttctttt 307  Q
    |||||||    
T  21406 ttctttt 21400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 13670 - 13585
Alignment:
Q  340 cttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgcataatagagactcattttttcttccttc 434  Q
    |||||||||||||||||||||||||||||||||         ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  13670 cttcttttacacgtgtgacccgttagttgccca---------atgtccttacataattccccgttgcataatagagactcattttttcttccttc 13585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 21407 - 21322
Alignment:
Q  340 cttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgcataatagagactcattttttcttccttc 434  Q
    |||||||||||||||||||||||||||||||||         ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  21407 cttcttttacacgtgtgacccgttagttgccca---------atgtccttacataattccccgttgcataatagagactcattttttcttccttc 21322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 260 - 432
Target Start/End: Complemental strand, 5939859 - 5939688
Alignment:
Q  260 tcccactaactttacatcattatataaaaataatttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacc 359  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | ||    
T  5939859 tccctctaactttacatcattatacaaaaataatttattacttcttctgcaagtgggaccaaccagtacatattttattacttcttttacacgtggggcc 5939760  T
Q  360 cgttagttgcccatgagagagcatgtccttatatagttccccgttgcataatagagactcattttttcttcct 432  Q
    ||||||||||||| |||||||   |||||| |||||||  ||||||| | |||| ||||||||||||||||||    
T  5939759 cgttagttgcccaggagagagagggtccttgtatagtt-gccgttgctttatagggactcattttttcttcct 5939688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 207 - 434
Target Start/End: Original strand, 28522879 - 28523105
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    ||||||||||||||||||||||||||||||| |||| ||| |  ||||||||  | || |||||||| ||||||||  ||||||||||||||||||||||    
T  28522879 gactccaatgacaatacactaataaggactctaatgcaaagtttttaaataggccacattaactttatatcattatgcaaaaataatttattacttcttt 28522978  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    ||||||||  | |||  | ||||||||||||||||||||||||||||| | | ||||||||||| | ||||||| | ||| |||||||||| | ||||||    
T  28522979 tgcaagtgatatcaattagtacatattttattacttcttttacacgtggggctcgttagttgcctaagagagag-aggtcattatatagttgctcgttgc 28523077  T
Q  407 ataatagagactcattttttcttccttc 434  Q
     ||||| |||||||||||||||| ||||    
T  28523078 ttaataaagactcattttttctttcttc 28523105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 207 - 349
Target Start/End: Original strand, 46688759 - 46688899
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  46688759 gactccaatgacaatacactaataatgactccaatgaaaagtacttaaatagg-cccactaactttacatcattatacaaaaataatttattacttcttt 46688857  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttac 349  Q
    ||||||| |||||||||| |||||| |||||||||||||||||    
T  46688858 tgcaagtaggaccaaccagtacata-tttattacttcttttac 46688899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 251 - 434
Target Start/End: Original strand, 50011719 - 50011903
Alignment:
Q  251 ttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttgcaagtgggaccaaccaa-----tacatattttattacttctt 345  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||     ||||||||||||||||||||    
T  50011719 ttaaatataccccgctaactttacatcattatacaaaaataatttattacttcttttgcaagtggtaccaaccaaaccagtacatattttattacttctt 50011818  T
Q  346 ttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgcataatagagactcattttttcttccttc 434  Q
    |||| |||| ||||||||||||| ||||||||||    ||||||||||||||    ||||| ||||| |||||||||||||||| ||||    
T  50011819 ttacgcgtgcgacccgttagttgtccatgagaga----gtccttatatagttgtatgttgcttaataaagactcattttttctttcttc 50011903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 296 - 434
Target Start/End: Complemental strand, 15456878 - 15456740
Alignment:
Q  296 attacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatag 395  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||| ||||||| |||| |||||||   ||||||||||||    
T  15456878 attacctcttttgcaagtgggaccaactaatacatattttattacttcttttaaatgtgggaccagttagttacccaggagagagggggtccttatatag 15456779  T
Q  396 ttccccgttgcataatagagactcattttttcttccttc 434  Q
    ||   |||||| |||||| |||||| |||||| ||||||    
T  15456778 ttgttcgttgcttaatagggactcaatttttcctccttc 15456740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 26991775 - 26991914
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta----ttactt 302  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||||||  || ||||| ||||||||||||| | ||||||||||||    |||||     
T  26991775 gactccaataacaatacactaataaggactccaatgaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataatttacatattactc 26991874  T
Q  303 cttttg-caagtgggaccaaccaatacatattttattact 341  Q
    |||||  |||||||||||||  | |||| |||||||||||    
T  26991875 ctttttacaagtgggaccaagtagtacacattttattact 26991914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 30627134 - 30627223
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||||||||||| |||||| ||||| |||| ||||||||||||||  |||||||| ||||||||||||| | ||||||||||||    
T  30627134 gactccaatgacaatacattaataaagactcaaatgaaaaatacttaaatatgtcccactatctttacatcattaaacaaaaataattta 30627223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 45467983 - 45468072
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||||||||||||| |||| |||||||||| |||||| |||||||  |||||||| ||||||||||||| | ||||||||||||    
T  45467983 gactccaatgacaatacactgataatgactccaatgaaaaatatttaaatatgtcccactatctttacatcattaaacaaaaataattta 45468072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 23082506 - 23082429
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||||| ||||||||||||||||   ||||||||||||| ||||| | ||||||||||||||    
T  23082506 tacactaataaggactccaatgaaaaatacttaaatagacttcactaactttacaacattaaacaaaaataatttatt 23082429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 49650208 - 49650119
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    ||||||||| |||||||| ||||||||||||||||| ||| ||||||||||  || ||||| ||||||||||||| | ||||||||||||    
T  49650208 gactccaataacaatacattaataaggactccaatgaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataattta 49650119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 6597553 - 6597462
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| |||||||| |  ||||||||||||||||||||| |||| | |||||||    
T  6597553 gactccaatgacagtacactaacaaggactccaatgaataatatttaaataggttacactaactttacatcattatacaaaagtgatttatt 6597462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 27163054 - 27163145
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||||| |  |||||||||| ||||| ||||||||| |  |||||||||||||| |||||| |||| |||||||||    
T  27163054 gactccaatgacaatacactaacagagactccaatgaaaaatgcttaaataggtgacactaactttacataattatacaaaagtaatttatt 27163145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 39093031 - 39092967
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactt 271  Q
    |||||||||||||||||| ||||||||||||||||  ||| ||||||||||  ||||||||||||    
T  39093031 gactccaatgacaatacaataataaggactccaattaaaagtacttaaatatgtcccactaactt 39092967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 432
Target Start/End: Original strand, 47677021 - 47677160
Alignment:
Q  293 tttattacttcttt-tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttat 391  Q
    |||||||||||||| ||||| || ||||||  | |||| |||||||||| | ||||| ||||| || ||||||||| |||| |||||||   ||||||||    
T  47677021 tttattacttctttatgcaaatgagaccaaatagtacacattttattacct-ttttaaacgtgggatccgttagttacccaagagagagagagtccttat 47677119  T
Q  392 atagttccccgttgcataatagagactcattttttcttcct 432  Q
    ||||||  ||||| | ||| | |||||||||||||||||||    
T  47677120 atagttgaccgttccttaacatagactcattttttcttcct 47677160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 45370919 - 45370780
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag-catg-tccttata 392  Q
    |||||||||||| | ||||||||| |   | |||| |||||||||||||||||| ||||| ||||||||||||||| | |||||||  ||| ||||||||    
T  45370919 tattacttctttagtaagtgggacaacatagtacaaattttattacttcttttaaacgtgggacccgttagttgcctaggagagagagatgatccttata 45370820  T
Q  393 tagttccccgttgcataatagagactcattttttcttcct 432  Q
     ||||    ||| | |||| ||||||||||||||||||||    
T  45370819 cagttatatgttccttaatggagactcattttttcttcct 45370780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 35718836 - 35718975
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta----ttact- 301  Q
    |||||||||| ||||||||||| |||||| |||||| ||| ||||||||||  || ||||| |||||| | |||| | ||||||||||||    |||||     
T  35718836 gactccaatggcaatacactaacaaggaccccaatgaaaagtacttaaatatgtctcactatctttactttattaaacaaaaataatttacttattactc 35718935  T
Q  302 tcttttgcaagtgggaccaaccaatacatattttattact 341  Q
    | |||| |||||||||||||  | |||| |||||||||||    
T  35718936 ttttttacaagtgggaccaagtagtacacattttattact 35718975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 38790605 - 38790671
Alignment:
Q  233 gactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta 299  Q
    |||||||||| ||||| ||||||||  || ||||||||||||||||||||| |||| ||||||||||    
T  38790605 gactccaatgaaaaatgcttaaataagtctcactaactttacatcattatacaaaagtaatttatta 38790671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 432
Target Start/End: Complemental strand, 1834956 - 1834817
Alignment:
Q  293 tttattacttcttt-tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatg-tcctta 390  Q
    ||||||||| |||| |||||||||||||||  | ||||  ||||||||||| ||||| ||||| |||||||||||| || ||||||||| ||| ||||||    
T  1834956 tttattactcctttatgcaagtgggaccaaatagtacacgttttattactt-ttttaaacgtgggacccgttagttaccaatgagagag-atgatcctta 1834859  T
Q  391 tatagttccccgttgcataatagagactcattttttcttcct 432  Q
    |||||||  ||||| | |||  | ||||| ||||||||||||    
T  1834858 tatagttgtccgttccttaacggggactcgttttttcttcct 1834817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 27163173 - 27163246
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttg 368  Q
    |||||||||||||| |||||| ||||||   || |||||||||||||||||||| ||||| |||| ||||||||    
T  27163173 tattacttcttttgaaagtggaaccaacttgtatatattttattacttcttttaaacgtgagacctgttagttg 27163246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 2356323 - 2356231
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatata-aaaataatttatt 298  Q
    ||||||||| |||||||| ||||   |||||||||  ||| || ||||| |||| ||||| |||||||||||||||||| |||||||||||||    
T  2356323 gactccaataacaatacattaattgagactccaataaaaagtatttaaaaagattccactgactttacatcattatataaaaaataatttatt 2356231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 13004224 - 13004294
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttag 365  Q
    |||||||||||||| |||||||||||   | ||||||||| ||||||||||||| ||||| ||||| ||||    
T  13004224 tattacttcttttgtaagtgggaccatatagtacatatttgattacttcttttaaacgtgggacccattag 13004294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 397
Target Start/End: Complemental strand, 39092922 - 39092820
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    ||||||||  |||||||||| ||||||| | || ||||||||||| |||||||| |||||  | |||||||||||| | || | || ||| |||||||||    
T  39092922 tattactttgtttgcaagtgagaccaactagtatatattttattatttcttttaaacgtgaaatccgttagttgcctaggaaaaagaatgcccttatata 39092823  T
Q  395 gtt 397  Q
    |||    
T  39092822 gtt 39092820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 18898275 - 18898348
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttg 368  Q
    |||||||| ||||| |||||||| ||||   ||||||||||||||||||||||  ||||| ||| |||||||||    
T  18898275 tattacttattttgaaagtgggatcaacttgtacatattttattacttcttttgaacgtgagactcgttagttg 18898348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 22767212 - 22767175
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatag 258  Q
    |||||||||||||||||||||| |||||||||||||||    
T  22767212 tacactaataaggactccaatgaaaaatacttaaatag 22767175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 12705325 - 12705412
Alignment:
Q  293 tttattacttcttt-tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
    ||||||||| |||| |||||||| ||||||  | |||| |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||    
T  12705325 tttattactcctttatgcaagtgagaccaagtagtacacattttattactt-ttttaaacgtgggacccattagttgcccaagagagag 12705412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 434
Target Start/End: Original strand, 26991921 - 26992045
Alignment:
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    |||||||||||||||  |||||| |||||||||||| ||||| ||||| | ||||||||||  ||| |||||||   ||||||||||||||  | |||      
T  26991921 tgcaagtgggaccaagtaatacacattttattactt-ttttaaacgtgaggcccgttagttatccaggagagag--ggtccttatatagttgtctgttct 26992017  T
Q  407 ataatagagactcattttttcttccttc 434  Q
     |||  | ||||||||||||||||||||    
T  26992018 ttaaccgggactcattttttcttccttc 26992045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 31437116 - 31437064
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttctttt 347  Q
    |||||||||||||| |||| ||||||||  |||||||||||||||||| ||||    
T  31437116 tattacttcttttgaaagtaggaccaacttatacatattttattacttatttt 31437064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 37586495 - 37586547
Alignment:
Q  229 taaggactccaatggaaaatacttaaatagatcccactaactttacatcatta 281  Q
    |||||||||||||| ||||||||||||||  || || ||||||||||||||||    
T  37586495 taaggactccaatgaaaaatacttaaataattctcattaactttacatcatta 37586547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 52898462 - 52898403
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtg 354  Q
    ||||| || ||||| ||||| |||||||  |||||||||||||||||||||||| |||||    
T  52898462 tattatttattttgaaagtgtgaccaacttatacatattttattacttcttttaaacgtg 52898403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 47675909 - 47675967
Alignment:
Q  238 caatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    ||||| ||||||||||||||  |||||||| ||||||||||||| | |||| |||||||    
T  47675909 caatgaaaaatacttaaatatgtcccactatctttacatcattaaacaaaagtaattta 47675967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 44343491 - 44343422
Alignment:
Q  219 aatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaa 288  Q
    |||| |||| |||||||||||||| ||||||||||||||  || || ||||||| || ||||||| ||||    
T  44343491 aatatactagtaaggactccaatgaaaaatacttaaatatgtctcattaactttgcaacattatacaaaa 44343422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 50011647 - 50011680
Alignment:
Q  208 actccaatgacaatacactaataaggactccaat 241  Q
    ||||||||||||||||| ||||||||||||||||    
T  50011647 actccaatgacaatacaataataaggactccaat 50011680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 207 - 370
Target Start/End: Original strand, 25749880 - 25750042
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    |||||||||| ||||||||||||||| |||||| || ||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||| |||    
T  25749880 gactccaatggcaatacactaataagaactcca-tgaaaaatacttaaatatgtcccactaactttacattattatacaaaaataatttattacttattt 25749978  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcc 370  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||| || ||||||||||||    
T  25749979 tgcaagtgggaccaaccagtacatattttattacttttttgacacgtgggatccgttagttgcc 25750042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 207 - 366
Target Start/End: Original strand, 42029584 - 42029742
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||| |||||||||||||||||| | |||||||| |||||| ||||||    
T  42029584 gactccaatgacaatacactaataaagacttcaatgaaaaatacttaaataaatccaactaactttacatcattaaacaaaaataa-ttattatttcttt 42029682  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagt 366  Q
    |  ||||| ||||||  ||||||||||||||||||||||||| | || ||||||||||||    
T  42029683 tataagtgagaccaaataatacatattttattacttcttttaaatgtatgacccgttagt 42029742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 21848576 - 21848713
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||||||| |||| |||||  ||| |||||||||||| ||||||  |||||||||||||    
T  21848576 tattactttttttgcaagtgggacaaactaatacatattttattacttcatttaaacgtggaacctgttagttgcccaggagagataatgtccttatata 21848675  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    |||    ||||| |||||| ||||| ||||||||||||    
T  21848676 gttgtttgttgcttaatagggactcgttttttcttcct 21848713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 37847402 - 37847265
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||||||||| |||||||||||   | ||||||||||||||||||||||| |||||  ||||||||||| || | ||||||| |||||||||||||    
T  37847402 tattacttcttttgtaagtgggaccacatagtacatattttattacttcttttaaacgtggaacccgttagtttcctaagagagagaatgtccttatata 37847303  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    ||| |||||| | |||| |  |||||||||||||||||    
T  37847302 gttacccgttccttaatgggaactcattttttcttcct 37847265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 27957582 - 27957498
Alignment:
Q  266 taactttacatcattatataaaaataatttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttaca 350  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||| |||||| ||||| || ||||||||||||||||||||||    
T  27957582 taactttacatcattttacaaaaataatttattatttcttttgcaattgggactaaccagtatatattttattacttcttttaca 27957498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 21848228 - 21848319
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||| ||||||||||| | |||||||||  ||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  21848228 gactccaatgaaaatacactaatcaagactccaataaaaagtacttaaataggtcccactaactttatatcattatacaaaaataatttatt 21848319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 432
Target Start/End: Complemental strand, 39446308 - 39446166
Alignment:
Q  290 taatttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtcctt 389  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| | ||| |||| |||||  | ||||||     |||||    
T  39446308 taatatattacttcttttgcaagtgggatcaactaatacatattttattacttcttttagacgcgagactcgtttgttgcttaggagagaaataatcctt 39446209  T
Q  390 atatagttccccgttgcataatagagactcattttttcttcct 432  Q
    ||||||||    ||||| |||||| ||||| ||||||||||||    
T  39446208 atatagttgtttgttgcttaatagggactcgttttttcttcct 39446166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 37456136 - 37456044
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta 299  Q
    |||||||||| ||||||||||||||||| || |||| ||||||||||||||   |||||||||||| ||| |||| | |||||||||||||||    
T  37456136 gactccaatggcaatacactaataaggattcaaatgaaaaatacttaaatatgccccactaactttgcattattaaacaaaaataatttatta 37456044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 44059341 - 44059281
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcatta 281  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  44059341 tacactaataaggactccaatgaaaagtacttaaatagatcccactaactttacgtcatta 44059281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 2968869 - 2968946
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||| | ||| |||||||||||   |||||||||||||||||||| | ||||||||||||||    
T  2968869 tacactaataaggactccaacgaaaagtacttaaataggctccactaactttacatcattaaacaaaaataatttatt 2968946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 10624914 - 10624826
Alignment:
Q  208 actccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||| |||| ||||||||| ||||||||  ||| |||||||||| ||||||||| |||||||| |||| | ||||||||||||    
T  10624914 actccaatgagaatatactaataagaactccaattaaaagtacttaaatatatcccactatctttacattattaaacaaaaataattta 10624826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 27559125 - 27559033
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta 299  Q
    |||||||||| ||||||| ||||||||| || |||| ||||||||||||||   |||||||||||| ||| |||| | |||||||||||||||    
T  27559125 gactccaatggcaatacattaataaggattcaaatgaaaaatacttaaatatgccccactaactttgcattattaaacaaaaataatttatta 27559033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 380
Target Start/End: Original strand, 28967600 - 28967776
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatt----tattact- 301  Q
    |||||||||||||||| | |||||| |||||||||| ||| ||||||||||  | ||| || ||||||||||||| | ||||||||||    |||||||     
T  28967600 gactccaatgacaataaagtaataatgactccaatgaaaagtacttaaatatgttccattatctttacatcattaaacaaaaataatttacatattactc 28967699  T
Q  302 tcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
      |||| |||||||||||||  | || | |||||||||||  ||||| ||||| |||||||||||| || | |||||||    
T  28967700 atttttacaagtgggaccaagtagtatacattttattact--ttttaaacgtgggacccgttagttacctaagagagag 28967776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 37847766 - 37847690
Alignment:
Q  222 acactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||| |||| |||||||||||||||  | |||| |||||||||| ||| | ||||||||||||||    
T  37847766 acactaataaggactctaatgaaaaatacttaaataggccacacttactttacatctttaaacaaaaataatttatt 37847690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 3703501 - 3703580
Alignment:
Q  219 aatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||| ||||||||| | ||||  ||| |||||| |||| |||||||||||||||||||||| | ||||||||||||||    
T  3703501 aatacattaataaggattacaataaaaagtacttatataggtcccactaactttacatcattaaacaaaaataatttatt 3703580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 12671878 - 12671787
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||| ||||||||||||||||||  |||||||||| |||||| ||||||   ||| ||||||||||||| |||||| |||| | |||||||    
T  12671878 gactcaaatgacaatacactaatacagactccaatgaaaaatatttaaatgagtcctactaactttacattattatacaaaagtcatttatt 12671787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 12863601 - 12863671
Alignment:
Q  226 taataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    ||||||||||  ||||| |||||||||||||||| ||||||||||||| ||| ||| | ||||||||||||    
T  12863601 taataaggacatcaatgaaaaatacttaaatagaccccactaactttatatcgttaaacaaaaataattta 12863671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 11916161 - 11916247
Alignment:
Q  183 aatgaaagtagctattaaagactcgactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactt 271  Q
    |||||||||| ||||||| |||  ||||| |||| |||||||||||||| ||||| |||  ||||||||||||||| || |||||||||    
T  11916161 aatgaaagtacctattaaggac--gactctaatgtcaatacactaataaagactcaaattaaaaatacttaaatagctcacactaactt 11916247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 12184823 - 12184735
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||||||||||||||||||  | | ||||| ||| ||||||||||  |||||||| ||||||||||||| | ||| ||||||||    
T  12184823 gactccaatgacaatacactaataaa-atttcaatgaaaagtacttaaatatgtcccactatctttacatcattaaacaaatataattta 12184735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 19141067 - 19140982
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
    |||||||||||||| || ||||||||||  |||||||| ||| ||||||||||| || || |||| ||||||||| || |||||||    
T  19141067 tattacttcttttgaaaatgggaccaacttatacatatcttaatacttcttttaaacatgagacctgttagttgctcaggagagag 19140982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 2969198 - 2969282
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagaga 379  Q
    |||||||||||||| ||||| || ||   | ||||||||||||||||||||||| ||||| ||||| ||||||||| | ||||||    
T  2969198 tattacttcttttgtaagtgagatcacatattacatattttattacttcttttaaacgtgggacccattagttgcctaggagaga 2969282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 12671759 - 12671677
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgaga 377  Q
    |||||||||||||  ||||||||| | |  |||||||||||| ||||||||||| ||||  | |||||||||||| |||||||    
T  12671759 tattacttcttttaaaagtgggacaaccttatacatattttaatacttcttttaaacgtaggtcccgttagttgctcatgaga 12671677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 12184695 - 12184619
Alignment:
Q  291 aatttattacttcttt-tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagtt 367  Q
    ||||||||||| |||| |||||||| ||||||  | ||||||||||||||||| ||||| || |||||||||||||||    
T  12184695 aatttattactcctttatgcaagtgagaccaagtagtacatattttattactt-ttttaaacatgtgacccgttagtt 12184619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 39446521 - 39446348
Alignment:
Q  96 cttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagct 195  Q
    |||||||||||||  ||||||||  | |||||  |||| ||||||||||| | || |||| |||||||||||||||||         ||||||| ||  |    
T  39446521 cttagagcatccacgatggtagtacagtaatatggactacttaaatggactacacgtgtacacatcacttatttataatttttt---aatgaaaatactt 39446425  T
Q  196 attaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactt 271  Q
    ||||| |||||   ||||||||||||||||||||  |||||||||||||  ||| ||||||||||  | ||||||||||    
T  39446424 attaaggactcaatgactccaatgacaatacact--taaggactccaattaaaagtacttaaatatgttccactaactt 39446348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 12016248 - 12016184
Alignment:
Q  333 tttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagtt 397  Q
    ||||||| |||||||| ||||| |||||||||||||| |  ||||||| | ||||||||||||||    
T  12016248 tttattatttcttttaaacgtgagacccgttagttgctcgggagagagaaggtccttatatagtt 12016184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 3703897 - 3703937
Alignment:
Q  326 tacatattttattacttcttttacacgtgtgacccgttagt 366  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  3703897 tacatattttattacttcttttaaacgtgagacccattagt 3703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 207 - 424
Target Start/End: Complemental strand, 37450915 - 37450695
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaa----atacttaaatagatcccactaactttacatcattatataaaaataatttattactt 302  Q
    |||||||||||||||| |||||| | |||| ||||  |||    |||||||||||| | ||||||| ||||||||||||   ||||||||||||||||||    
T  37450915 gactccaatgacaatatactaatgatgacttcaataaaaaaaatatacttaaataggt-ccactaattttacatcattacccaaaaataatttattactt 37450817  T
Q  303 cttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccg 402  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |  |||||||||||| |  |||| |   |||||||||||||| | ||    
T  37450816 cttttgcaagtgggatcaaccaatacatattttattacttcttttacacgtggggtccgttagttgcctagaagagggagggtccttatatagttgctcg 37450717  T
Q  403 ttgcataatagagactcatttt 424  Q
    |||| |||||||||||||||||    
T  37450716 ttgcttaatagagactcatttt 37450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 207 - 396
Target Start/End: Original strand, 56397091 - 56397280
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    ||||||||||||||||| | |||||||||| ||||| ||||||||||||||  |  || |||||||||||||||||| ||||||||||||| ||||||||    
T  56397091 gactccaatgacaatacgcgaataaggacttcaatgaaaaatacttaaatatgtgtcattaactttacatcattatacaaaaataatttataacttcttt 56397190  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagt 396  Q
    | ||||| ||| |||| | | |||||||||||| |||||||||| ||||||||||||||||||| |||| |||| |  ||||||||||||    
T  56397191 tacaagtcggatcaactactgcatattttattatttcttttacatgtgtgacccgttagttgcctatgaaagagaaaatccttatatagt 56397280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 346
Target Start/End: Original strand, 44991744 - 44991911
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattata 283  Q
    |||||| ||||||| |||||   |||||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||||| ||||||||||||| |    
T  44991744 aaagtacctattaaggactcaatgactccaatggcaatacactaataaggactccaatgaaaaatacttaaatatgtcccactatctttacatcattaaa 44991843  T
Q  284 taaaaataattta----ttacttcttttg-caagtgggaccaaccaatacatattttattacttcttt 346  Q
     ||||||||||||    ||||| |||||  |||||||||||||  | |||| ||||||||||| ||||    
T  44991844 caaaaataatttacctattactcctttttacaagtgggaccaagtagtacacattttattactccttt 44991911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 13678514 - 13678715
Alignment:
Q  97 ttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagcta 196  Q
    ||||||||||||||||||||||    ||||||||||| ||||||||||||  || | || || ||||||||||||||         ||| ||||||  ||    
T  13678514 ttagagcatccataatggtagttccttaatagagactccttaaatggaccccacgt-tacacgtcacttatttataatatatt---aataaaagtactta 13678609  T
Q  197 ttaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataat 293  Q
    ||||||||||   ||||||||||||||||||||||||||||||| |||| ||| ||||||||||   |||||||||||| |||||||| | |||||||||    
T  13678610 ttaaagactcaatgactccaatgacaatacactaataaggactcaaatgaaaagtacttaaatatgccccactaactttgcatcattaaacaaaaataat 13678709  T
Q  294 ttatta 299  Q
    ||||||    
T  13678710 ttatta 13678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 12191613 - 12191524
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||  || ||||| ||||||||||||| | ||||||||||||    
T  12191613 gactccaatgacaatacactaataaggactccaatgaaaaatacttaaatatgtctcactatctttacatcattaaacaaaaataattta 12191524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 38068177 - 38068088
Alignment:
Q  209 ctccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||| | |||||||||||||||||||||  ||| |||||||||||  ||||||||||||||||||||| | ||||||||||||||    
T  38068177 ctccaatgagagtacactaataaggactccaataaaaagtacttaaataggccccactaactttacatcattaaacaaaaataatttatt 38068088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 51175638 - 51175526
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattata 283  Q
    |||||| ||||||| |||||   |||||||||| ||||||| ||||||||||||||||  ||||||||||||||  |||||||| ||||||||||||| |    
T  51175638 aaagtacctattaaggactcaatgactccaatggcaatacattaataaggactccaattcaaaatacttaaatatgtcccactatctttacatcattaaa 51175539  T
Q  284 taaaaataattta 296  Q
      |||||||||||    
T  51175538 cgaaaataattta 51175526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 36904251 - 36904174
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||||||||||| || |||||||||||||||   |||||||||||||||||||| | ||||||||||||||    
T  36904251 tacactaataaggactccagtgaaaaatacttaaataggctccactaactttacatcattaaacaaaaataatttatt 36904174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 432
Target Start/End: Complemental strand, 51175469 - 51175345
Alignment:
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    |||||||||||||||  | |||| ||||||||| || ||||| ||||| |||||||||||| ||||||||||||   |||||||||||||| |||||| |    
T  51175469 tgcaagtgggaccaagtagtacacattttattaatt-ttttaaacgtgggacccgttagttacccatgagagagagggtccttatatagttgcccgttcc 51175371  T
Q  407 ataatagagactcattttttcttcct 432  Q
     |||  | ||||||||||||||||||    
T  51175370 ttaacggggactcattttttcttcct 51175345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 299
Target Start/End: Original strand, 5744804 - 5744896
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta 299  Q
    |||||||||| ||||||||||||||||| || |||| ||||||||||||||   |||||||||||| ||| |||| | |||||||||||||||    
T  5744804 gactccaatggcaatacactaataaggattcaaatgaaaaatacttaaatatgccccactaactttgcattattaaacaaaaataatttatta 5744896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 27064454 - 27064545
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||| |||||||||||||||||| ||||||||||  ||| |  |||||||  || ||||||||||||||||||||| ||||||||||||||    
T  27064454 gactctaatgacaatacactaatagggactccaataaaaactgtttaaatatgtctcactaactttacatcattatacaaaaataatttatt 27064545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 27085558 - 27085649
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||| |||||||||||||||||| ||||||||||  ||| |  |||||||  || ||||||||||||||||||||| ||||||||||||||    
T  27085558 gactctaatgacaatacactaatagggactccaataaaaactgtttaaatatgtctcactaactttacatcattatacaaaaataatttatt 27085649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 4711665 - 4711545
Alignment:
Q  219 aatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttgcaagtgggac 318  Q
    |||||| ||||||||||||||||| ||    ||||||||  |  ||||||||||||||||||| | ||||||||||||||| ||||||| ||||| |||     
T  4711665 aatacattaataaggactccaatgaaa----cttaaatatgttgcactaactttacatcattaaacaaaaataatttattatttcttttacaagttggat 4711570  T
Q  319 caaccaatacatattttattacttc 343  Q
     ||  | ||||||||||||||||||    
T  4711569 taagtagtacatattttattacttc 4711545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 38168122 - 38168227
Alignment:
Q  195 tattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaata 291  Q
    ||||||||||||   |||||||||   |||||| ||||||||||||||||| ||| ||||||||||   |||||||| |||||||||||| | |||||||    
T  38168122 tattaaagactcaatgactccaatagaaatacattaataaggactccaatgaaaagtacttaaataagccccactaattttacatcattaaacaaaaata 38168221  T
Q  292 atttat 297  Q
    ||||||    
T  38168222 atttat 38168227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 341
Target Start/End: Complemental strand, 38068627 - 38068459
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaataga------tcccactaactttacatc 277  Q
    |||||| ||||||| |||||   ||||| |||||||||||||||||||||||||||| | ||| |||||||||| |      |||||||| |||||||||    
T  38068627 aaagtacctattaaggactcaatgactctaatgacaatacactaataaggactccaaagaaaagtacttaaatataaatatgtcccactatctttacatc 38068528  T
Q  278 attatataaaaataatt----tattacttc-ttttgcaagtgggaccaaccaatacatattttattact 341  Q
    |||| | ||||||||||    ||||||| | |||| |||||||||||||  | |||| |||||||||||    
T  38068527 attaaagaaaaataatttacatattactcctttttacaagtgggaccaagtagtacacattttattact 38068459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 40445843 - 40445712
Alignment:
Q  220 atacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta----ttacttcttttg-caagtg 314  Q
    ||||||||||||||||||||| | ||||||||||||||   ||||||| ||||||||||||| | |||||| |||||    ||||| |||||  ||||||    
T  40445843 atacactaataaggactccaacgaaaaatacttaaatatggcccactatctttacatcattaaacaaaaatgatttacctattactcctttttacaagtg 40445744  T
Q  315 ggaccaaccaatacatattttattacttcttt 346  Q
    |||||||  | |||| ||||||||||| ||||    
T  40445743 ggaccaagtagtacacattttattactccttt 40445712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 17058793 - 17058900
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattata 283  Q
    |||||||||||||| |||||   |||||||||   | ||||||||||||||||| |||| ||| |||||||||||  ||||||| ||||||||||||| |    
T  17058793 aaagtagctattaaggactcaatgactccaataggagtacactaataaggactcaaatgaaaagtacttaaataggccccactatctttacatcattaaa 17058892  T
Q  284 taaaaata 291  Q
     |||||||    
T  17058893 caaaaata 17058900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 36622281 - 36622366
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
    |||||||||||||  |||||||||||||  ||| |||||| ||||||||||||| | ||| |||||||||||||| || |||||||    
T  36622281 tattacttcttttaaaagtgggaccaacttatatatatttgattacttcttttaaatgtgggacccgttagttgctcaggagagag 36622366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 13665782 - 13665858
Alignment:
Q  223 cactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta 299  Q
    ||||||||||||||| |||| ||| ||||||||||   |||||||||||| |||||||| | |||||||||||||||    
T  13665782 cactaataaggactcaaatgaaaagtacttaaatatgccccactaactttgcatcattaaacaaaaataatttatta 13665858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 434
Target Start/End: Original strand, 31767838 - 31768057
Alignment:
Q  212 caatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta----ttacttctttt 307  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||       |||  ||||||| |||| | ||||||||||||    |||||  ||||    
T  31767838 caatgacaatacactaatatggactccaatgaaaagtacttaaata-------ctatatttacatgattaaacaaaaataatttacctattactcatttt 31767930  T
Q  308 g-caagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
      |||||||||| ||  | |||| |||||||||||| ||||| ||||| |||||||||||| |||| |||||||   || ||||||||||| | || | |    
T  31767931 tacaagtgggactaagtagtacacattttattactt-ttttaaacgtgggacccgttagttacccaggagagagagagttcttatatagttgctcgatcc 31768029  T
Q  407 ataatagagactcattttttcttccttc 434  Q
     |||  | ||||||||||||||||||||    
T  31768030 ttaacggtgactcattttttcttccttc 31768057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 30482923 - 30483010
Alignment:
Q  212 caatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatta 299  Q
    |||||| |||||| |||||  |||||||||  |||||| |||||||| || || |||||||||||||||||| |||| ||||||||||    
T  30482923 caatgataatacattaatagagactccaataaaaaatatttaaataggtcgcattaactttacatcattatacaaaagtaatttatta 30483010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 397
Target Start/End: Original strand, 45832132 - 45832322
Alignment:
Q  208 actccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataat----ttattacttc 303  Q
    ||||||||| ||||||||||||||||||||||||| ||  ||||||||||  | | |||| |||||   ||||| | |||||||||    |||||||| |    
T  45832132 actccaatggcaatacactaataaggactccaatgaaaggtacttaaatatgttctactatcttta---cattaaacaaaaataatttacttattactgc 45832228  T
Q  304 -ttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagtt 397  Q
     ||||  ||||||||||||  | |||| |||||||||||| ||||| |||||  ||||||||||| |||| |||||||   ||| ||||||||||    
T  45832229 tttttaaaagtgggaccaagtagtacacattttattactt-ttttaaacgtggaacccgttagttacccaggagagagagggtctttatatagtt 45832322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 368
Target Start/End: Original strand, 49551789 - 49551892
Alignment:
Q  265 ctaactttacatcattatataaaaataatttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgtta 364  Q
    |||||||||||| |||| | ||||||||||||||| || ||| | |||| ||| ||||  |||||||||||||||||||||||  || || |||| ||||    
T  49551789 ctaactttacattattacacaaaaataatttattagttatttagaaagtaggatcaactcatacatattttattacttcttttgaacatgagacctgtta 49551888  T
Q  365 gttg 368  Q
    ||||    
T  49551889 gttg 49551892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 19854071 - 19853994
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||||||||  |||  ||| |||||||||||  ||||||||||||||||||| | | ||||||||||||||    
T  19854071 tacactaataaggactttaataaaaagtacttaaataggccccactaactttacatcatcaaacaaaaataatttatt 19853994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 38067807 - 38067670
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||||||||| ||| |||||||   | ||||||||||||||||||||||| |||||  | ||||||||| || | |||||||    | ||||||||    
T  38067807 tattacttcttttgtaagcgggaccacatattacatattttattacttcttttaaacgtgaaatccgttagttacctaggagagaggggattcttatata 38067708  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    ||| || ||| | |||| | || |||||||||||||||    
T  38067707 gttacctgttccttaatggggattcattttttcttcct 38067670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 432
Target Start/End: Complemental strand, 38068452 - 38068328
Alignment:
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    |||||||||||||||  | |||| ||||||||| || ||||| ||||| ||| |||||||| |||| ||||||| | |||||||||||||| | |||| |    
T  38068452 tgcaagtgggaccaagtagtacacattttattattttttttaaacgtgagactcgttagttacccaggagagag-aggtccttatatagttactcgttcc 38068354  T
Q  407 ataatagagactcattttttcttcct 432  Q
     |||  | ||||| ||||||||||||    
T  38068353 ttaagggggactcgttttttcttcct 38068328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 4711403 - 4711311
Alignment:
Q  338 tacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgcataatagagactcattttttcttcct 432  Q
    ||||||||||| ||| ||||||||||||||| ||| |||||||   ||| ||||||||||  | ||||| |||||  ||||||||||||||||||    
T  4711403 tacttcttttaaacgcgtgacccgttagttgtccaagagagag--agtctttatatagttgtcagttgcttaatatggactcattttttcttcct 4711311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 397
Target Start/End: Complemental strand, 40445725 - 40445623
Alignment:
Q  293 tttattacttcttt-tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttat 391  Q
    ||||||||| |||| ||||||||||  ||| || |||| |||||||||||| ||||| ||||| |||||||||||| | ||||||||||   ||||||||    
T  40445725 tttattactcctttatgcaagtggggtcaagcagtacacattttattactt-ttttaaacgtgggacccgttagttactcatgagagag--agtccttat 40445629  T
Q  392 atagtt 397  Q
    ||||||    
T  40445628 atagtt 40445623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 56228205 - 56228294
Alignment:
Q  208 actccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||  | |||| ||||||||||||||||| ||| || |||||||||  |||||||| ||||||||||| | |||| |||||||||    
T  56228205 actccaatggaagtacattaataaggactccaatgaaaagtatttaaatagacaccactaac-ttacatcattaaacaaaactaatttatt 56228294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 34929320 - 34929264
Alignment:
Q  232 ggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaa 288  Q
    ||||||||||| ||||||| ||||||  | ||||||||||||||| |||||||||||    
T  34929320 ggactccaatgaaaaatacctaaatatgttccactaactttacattattatataaaa 34929264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 27064573 - 27064631
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgt 353  Q
    |||||||||||| | |||||| ||||||  ||||||||||| |||||||||||| ||||    
T  27064573 tattacttctttcgaaagtggaaccaacttatacatattttcttacttcttttaaacgt 27064631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 27085677 - 27085735
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgt 353  Q
    |||||||||||| | |||||| ||||||  ||||||||||| |||||||||||| ||||    
T  27085677 tattacttctttcgaaagtggaaccaacttatacatattttcttacttcttttaaacgt 27085735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 37451019 - 37450946
Alignment:
Q  100 gagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataa 173  Q
    ||||||||| |||||||||| | |||||| |||||||||||| || |  ||||||  || ||||||||||||||    
T  37451019 gagcatccacaatggtagtccattaatagggacttcttaaatagatcccacatgtgcacgtcacttatttataa 37450946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 36456510 - 36456554
Alignment:
Q  304 ttttgcaagtgggaccaaccaatacatattttattacttctttta 348  Q
    ||||| ||||| |||||||  ||||||||||||||||||||||||    
T  36456510 ttttgaaagtgagaccaacttatacatattttattacttctttta 36456554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 56228562 - 56228637
Alignment:
Q  304 ttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
    |||| |||||||| ||||  | ||||||||||||||||| ||||| ||||| |||||||||||| | || |||||||    
T  56228562 ttttacaagtggggccaagtagtacatattttattactt-ttttaaacgtgggacccgttagttactcaggagagag 56228637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 183 - 380
Target Start/End: Original strand, 25701529 - 25701729
Alignment:
Q  183 aatgaaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcat 279  Q
    |||||||||| ||||||| || ||   |||||||||||||||||||||||||| ||| ||||  ||| ||||||||||  || ||| |||||||||| ||    
T  25701529 aatgaaagtacctattaaggattcaaagactccaatgacaatacactaataagaacttcaattaaaagtacttaaataagtctcaccaactttacattat 25701628  T
Q  280 tatataaaaataatttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagaga 379  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||   |||||||||||||||||||||||||||| || |||||||||| | ||||||||    
T  25701629 tatacaaaaataatttattatttcttttgcaagtgggacaaaccggaacatattttattacttcttttacacgtgggatccgttagttgtcgatgagaga 25701728  T
Q  380 g 380  Q
    |    
T  25701729 g 25701729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 207 - 380
Target Start/End: Complemental strand, 47142848 - 47142675
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||||||||||| || |||||||||||||||| || | |||||||||||||||||| |||    
T  47142848 gactccaatgacaagatactaataaggactccaatgaaaactacttaaataggtctcactaactttacatcactaaacaaaaataatttattacttattt 47142749  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagag 380  Q
    ||||||   ||||||  | ||||||||||||||||||||||| ||||| || | |||||||||| | |||||||    
T  47142748 tgcaaggaagaccaaatagtacatattttattacttcttttaaacgtgagatctgttagttgcctaggagagag 47142675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 379
Target Start/End: Complemental strand, 46981920 - 46981748
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttt 306  Q
    ||||||||||||||||||||||||||  || || || ||| ||  ||||||  || ||||||||||||||||||||| |||| ||||| |||||||||||    
T  46981920 gactccaatgacaatacactaataagagcttcattgaaaagtatctaaataagtctcactaactttacatcattatacaaaagtaattcattacttcttt 46981821  T
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagaga 379  Q
    || | | | |||||||   ||||| |||||||| |||||||  | ||| |||||||||||||| |||||||||    
T  46981820 tgaacgcgagaccaacttctacatgttttattatttcttttgaatgtgagacccgttagttgctcatgagaga 46981748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 1559590 - 1559680
Alignment:
Q  208 actccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||| ||||||||||||||| |||| |||| ||||||||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  1559590 actccaatgtcaatacactaataagaactctaatgaaaaatacttaaataggtctcactaactttacatcattatacaaaaattatttatt 1559680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 31834048 - 31833957
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||| | | |||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31834048 gactccaataaaagtacactaataagaactctaataaaaaatacttaaatagatcccactaactttacatcattaaacaaaaataatttatt 31833957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 32552397 - 32552306
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| | ||||| || |||||    
T  32552397 gactccaatgagagtacactaataaggactccaatgaaaaatacttaaataggtcccattaactttacatcattaaacaaaaaaaaattatt 32552306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 263 - 380
Target Start/End: Original strand, 32721914 - 32722031
Alignment:
Q  263 cactaactttacatcattatataaaaataatttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgt 362  Q
    ||||||||||||||||||||  |||| ||||||||||| ||||||| ||||  |||||||  |||||||||||||||||||||||| | ||  || ||||    
T  32721914 cactaactttacatcattattcaaaagtaatttattacatcttttgaaagtaagaccaacttatacatattttattacttcttttaaatgtaggatccgt 32722013  T
Q  363 tagttgcccatgagagag 380  Q
    ||||||| || |||||||    
T  32722014 tagttgctcaggagagag 32722031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 1559900 - 1560007
Alignment:
Q  290 taatttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtcctt 389  Q
    |||| |||||||||| ||||||||| ||||||| | ||||||||||||||||| ||||| ||||| |||| | ||||||||||||||| ||   ||||||    
T  1559900 taatatattacttctgttgcaagtgtgaccaactagtacatattttattactttttttaaacgtgagacctgctagttgcccatgagaaagatggtcctt 1559999  T
Q  390 atatagtt 397  Q
    ||||||||    
T  1560000 atatagtt 1560007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 299
Target Start/End: Complemental strand, 23059304 - 23059103
Alignment:
Q  97 ttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagcta 196  Q
    ||||||||||||||||||||||    ||||| ||||| ||||||||||||  || | || || ||||||||||||||         ||| ||||||  ||    
T  23059304 ttagagcatccataatggtagttccttaataaagactccttaaatggaccccacgt-tacacgtcacttatttataatatatt---aataaaagtactta 23059209  T
Q  197 ttaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataat 293  Q
    ||||||||||   |||||||||| |||| ||||||||||||||| |||| ||| ||||||||||   |||||||||||| |||||||| | |||||||||    
T  23059208 ttaaagactcaatgactccaatggcaatccactaataaggactcaaatgaaaagtacttaaatatgccccactaactttgcatcattaaacaaaaataat 23059109  T
Q  294 ttatta 299  Q
    ||||||    
T  23059108 ttatta 23059103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 19611261 - 19611149
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattata 283  Q
    |||||| ||||||| |||||   |||||||||||||||||||||||||| | | ||||| ||| ||||||||||  |||||||| ||||||||||||| |    
T  19611261 aaagtacctattaaggactcaatgactccaatgacaatacactaataagaaattcaatgaaaagtacttaaatatgtcccactatctttacatcattaaa 19611162  T
Q  284 taaaaataattta 296  Q
     ||||||||||||    
T  19611161 caaaaataattta 19611149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 1151610 - 1151687
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||||  ||| |||||||||||  ||||||||||||||||||||| | ||||||||||||||    
T  1151610 tacactaataaggactccaataaaaagtacttaaataggccccactaactttacatcattaaacaaaaataatttatt 1151687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 430
Target Start/End: Complemental strand, 38585919 - 38585784
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttc-ttttacacgtgtgacccgttagttgcccatgagagagcatg-tccttata 392  Q
    |||||||||||||| || |  ||||||| |||||||||||||||| ||| ||||| ||||| |||||||||||| |  ||||||||| ||| ||||||||    
T  38585919 tattacttcttttgtaaataagaccaactaatacatattttattatttctttttaaacgtgcgacccgttagtttcttatgagagag-atgatccttata 38585821  T
Q  393 tagttccccgttgcataatagagactcattttttcttc 430  Q
    |||||  ||||||| |||| ||||||||||||||||||    
T  38585820 tagttgtccgttgcttaat-gagactcattttttcttc 38585784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 55222490 - 55222401
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||||||||||||||||||||||  ||||||||| ||| ||||||||||  || ||||| ||||||||||||| | ||||||||||||    
T  55222490 gactccaatgacaatacactaataaatactccaatgaaaattacttaaatatgtctcactatctttacatcattaaacaaaaataattta 55222401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 430
Target Start/End: Original strand, 1292033 - 1292164
Alignment:
Q  299 acttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttc 398  Q
    |||||||||| || || ||||||  | ||||||||||||||||||||||| ||||| || |||||||||||| | ||||||    ||||||||||||||     
T  1292033 acttcttttggaaatgagaccaaatagtacatattttattacttcttttaaacgtgggatccgttagttgcctaggagagatagagtccttatatagtta 1292132  T
Q  399 cccgttgcataatagagactcattttttcttc 430  Q
    || ||| | |||| || |||||||||||||||    
T  1292133 cctgtttcttaatggatactcattttttcttc 1292164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 38586138 - 38585977
Alignment:
Q  97 ttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagcta 196  Q
    |||||||||||| |||||||||  ||||| | ||||| |||||||||||   || |||| || | ||||||||||||         ||||||||||||||    
T  38586138 ttagagcatccacaatggtagtacactaacatagactccttaaatggacttcacttgtacacgttacttatttataatttttt---aatgaaagtagcta 38586042  T
Q  197 ttaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatag 258  Q
    |||| |||||   ||||||||||||||||||||||||| |||||||||  || ||||||||||||    
T  38586041 ttaaggactcaatgactccaatgacaatacactaataaagactccaatcaaatatacttaaatag 38585977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 37526766 - 37526851
Alignment:
Q  212 caatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||| |||||||  |||| ||||| |||||||||||||| ||   ||||||||||||||||||||| |||||||||||||    
T  37526766 caatgacaataaactaatagagacttcaatgaaaaatacttaaatatattttactaactttacatcattatat-aaaataatttatt 37526851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 7325564 - 7325633
Alignment:
Q  244 aaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttgcaagt 313  Q
    |||||| |||||||  || ||||||||||||||||||| | ||||||||||||||||||||||| |||||    
T  7325564 aaaatatttaaatatttctcactaactttacatcattaaacaaaaataatttattacttcttttacaagt 7325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 432
Target Start/End: Complemental strand, 19611091 - 19610967
Alignment:
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    |||||||||||||||  | |||| ||||||||| || ||||| ||||| |||||||||||| |  | ||||||| | |||||||||||||| |||||| |    
T  19611091 tgcaagtgggaccaagtagtacacattttattaatt-ttttaaacgtgagacccgttagttacttaagagagagaaggtccttatatagttacccgttcc 19610993  T
Q  407 ataatagagactcattttttcttcct 432  Q
     |||  | ||||||||||||||||||    
T  19610992 ttaacggggactcattttttcttcct 19610967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 40242684 - 40242606
Alignment:
Q  266 taactttacatcattatataaaaa-taatttattacttcttttgcaagtgggaccaaccaatacatattttattacttc 343  Q
    ||||||||||| |||||| ||||| ||||| ||||||||||||| ||||||||  ||  ||||||||||||||||||||    
T  40242684 taactttacattattatacaaaaaataattaattacttcttttgtaagtgggattaattaatacatattttattacttc 40242606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 14903453 - 14903368
Alignment:
Q  212 caatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttat 297  Q
    |||||||||||||||||||| ||||| |||| ||| ||  ||||||   |||||||||||| |||||||| | |||||||||||||    
T  14903453 caatgacaatacactaataatgactcaaatgaaaagtatataaatatgccccactaactttgcatcattaaacaaaaataatttat 14903368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 28131296 - 28131159
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    ||||| |||||||||||||||||||||  ||||||||| |||||| || ||||| |||||  |||| ||||||||  | ||||||    ||| |||||||    
T  28131296 tattatttcttttgcaagtgggaccaagtaatacatatattattatttattttaaacgtggaacccattagttgcttaggagagaaagagtctttatata 28131197  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    ||  |||||| | |||||   |||||||||||||||||    
T  28131196 gtgacccgttccttaataagaactcattttttcttcct 28131159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 281
Target Start/End: Complemental strand, 28131526 - 28131342
Alignment:
Q  97 ttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagcta 196  Q
    |||||||||| | ||||||| |||  |||||| |||| |||||||||| |   |||||| |||||||||||||||||         ||| |||||| |||    
T  28131526 ttagagcatctacaatggtaatctt-taatagggactccttaaatggatcccgcatgtacacatcacttatttataattttttt--aataaaagtatcta 28131430  T
Q  197 ttaaagactcga---ctccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcatta 281  Q
    |||||||| |||   ||||||||  |||||||||| ||||||||| ||  ||| ||||||||||  || |||||||||||||||||||    
T  28131429 ttaaagacccgatgactccaatggtaatacactaacaaggactcccataaaaattacttaaataagtctcactaactttacatcatta 28131342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 1294616 - 1294572
Alignment:
Q  209 ctccaatgacaatacactaataaggactccaatggaaaatactta 253  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  1294616 ctccaatgacaatacactaataaggactccaatgaaaagtactta 1294572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 5992202 - 5992285
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttat 297  Q
    |||| ||||||||||||||||||||||||||||||| ||       | |||  |||||||| ||||||||||||| |||||||||||||||    
T  5992202 gacttcaatgacaatacactaataaggactccaatgaaa-------agatatgtcccactatctttacatcattaaataaaaataatttat 5992285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 40243246 - 40243198
Alignment:
Q  96 cttagagcatccataatggtagtctactaatagagacttcttaaatgga 144  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  40243246 cttagagcatccacaatggtaatctactaatagagactccttaaatgga 40243198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 3935755 - 3935834
Alignment:
Q  218 caatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttat 297  Q
    |||||| |||| ||||||||||||| ||| ||||||||||  || || || ||||||||||||| | |||||||||||||    
T  3935755 caatactctaacaaggactccaatgaaaagtacttaaatatgtctcattatctttacatcattaaacaaaaataatttat 3935834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 13778271 - 13778185
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatt 294  Q
    ||||| |||||||||||| ||| || |||||||||| ||| | ||||||||  || ||||||| |||||||||||||||||| |||||    
T  13778271 gactctaatgacaatacattaacaaagactccaatgaaaagtgcttaaatatgtctcactaac-ttacatcattatataaaagtaatt 13778185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 35540547 - 35540646
Alignment:
Q  333 tttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgcataatagagactcattttttcttcct 432  Q
    ||||||| |||||||| | ||| ||||||||||||||| | ||||||| |  ||||||||||||| |  ||| | |||||  ||||||||||||||||||    
T  35540547 tttattatttcttttaaatgtgagacccgttagttgcctaggagagagaaaatccttatatagttacatgttacttaatattgactcattttttcttcct 35540646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 48098434 - 48098387
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaa 254  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||    
T  48098434 gactccaatgacaatacattaataaggactccaataaaaaatacttaa 48098387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 48098365 - 48098288
Alignment:
Q  293 tttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcc 370  Q
    ||||||||||||||| ||||| |||| ||  | |||||||||||||| |||||||| ||||  ||| |||||||||||    
T  48098365 tttattacttcttttacaagtaggactaagtagtacatattttattagttcttttaaacgtaggactcgttagttgcc 48098288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 397
Target Start/End: Complemental strand, 33428792 - 33428690
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgt-ccttatat 393  Q
    |||||||||||||  | |||||||||   ||||||||||||||||||| ||||| || || ||||||||| ||| | | ||||||| |||| ||||||||    
T  33428792 tattacttcttttctatgtgggaccacataatacatattttattactttttttaaacatgagacccgttatttgtctaggagagag-atgtaccttatat 33428694  T
Q  394 agtt 397  Q
    ||||    
T  33428693 agtt 33428690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 1151987 - 1152093
Alignment:
Q  326 tacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgcataatagagactcattttt 425  Q
    ||||||||||||||||||||||| ||| | || || ||||||||| | |||||||   || |||||||| || | |||| | ||||   |||||||||||    
T  1151987 tacatattttattacttcttttaaacgcgggatcccttagttgcctaggagagagagggtacttatataattactcgtttcttaatgaggactcattttt 1152086  T
Q  426 tcttcct 432  Q
    |||||||    
T  1152087 tcttcct 1152093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 397
Target Start/End: Complemental strand, 1292517 - 1292415
Alignment:
Q  293 tttattacttcttt-tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttat 391  Q
    ||||||||| |||| |||||||||||||||  | |||| |||||||||||| ||||| | ||| |||||||||||| || | |||||||   ||||||||    
T  1292517 tttattactcctttatgcaagtgggaccaattagtacacattttattactt-ttttaaatgtgggacccgttagttacctaggagagag--ggtccttat 1292421  T
Q  392 atagtt 397  Q
    ||||||    
T  1292420 atagtt 1292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 430
Target Start/End: Original strand, 3935875 - 3936011
Alignment:
Q  293 tttattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttata 392  Q
    ||||||||| ||||| |||||||||  ||  | |||| |||||||||||| ||||| | ||   ||||||||||| |||| |||||||   |||||||||    
T  3935875 tttattactccttttacaagtgggattaagtagtacacattttattactt-ttttaaatgttgaacccgttagttacccaagagagagagggtccttata 3935973  T
Q  393 tagttccccgttgcataatagagactcattttttcttc 430  Q
    |||||   |||| | ||| || ||||||||||||||||    
T  3935974 tagtttttcgttccttaacagggactcattttttcttc 3936011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 47142950 - 47142901
Alignment:
Q  97 ttagagcatccataatggtagtctactaatagagacttcttaaatggacc 146  Q
    ||||| |||||| |||||||||| ||||| ||||||| ||||||||||||    
T  47142950 ttagaccatccacaatggtagtccactaaaagagactccttaaatggacc 47142901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 298
Target Start/End: Original strand, 7176952 - 7177152
Alignment:
Q  98 tagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagctat 197  Q
    |||||||||||||||| ||||  |||||||  ||||||||| |||||||  || |||| |||||| ||||||||||         |||||||||| ||||    
T  7176952 tagagcatccataatgatagtacactaataaggacttcttatatggaccccacgtgtacacatcatttatttataatttttt---aatgaaagtatctat 7177048  T
Q  198 taaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatt 294  Q
    ||| |||||   ||||||||||||||||||||||||||| |||||||| ||| ||||||||||  |||||||||||||||| ||||||| ||||||||||    
T  7177049 taaggactcaatgactccaatgacaatacactaataagggctccaatgaaaagtacttaaataagtcccactaactttacaccattatacaaaaataatt 7177148  T
Q  295 tatt 298  Q
    ||||    
T  7177149 tatt 7177152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 207 - 404
Target Start/End: Complemental strand, 1581578 - 1581377
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataat----ttattact- 301  Q
    ||||| |||||||||||| ||||||||||||||||| ||| ||||||||||  |||||||| ||||||||||||| | |||||||||    ||||||||     
T  1581578 gactcgaatgacaatacattaataaggactccaatgaaaagtacttaaatatgtcccactatctttacatcattaaacaaaaataatttacttattactc 1581479  T
Q  302 tcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttcccc 401  Q
      |||| |||||||||||||  | |||| |||||||||||| ||||| ||| | |||||||||||| |||| |||||||   |||||||||||||| |||    
T  1581478 atttttacaagtgggaccaagtagtacacattttattactt-ttttaaacgcgagacccgttagttacccaggagagagagggtccttatatagttgccc 1581380  T
Q  402 gtt 404  Q
    |||    
T  1581379 gtt 1581377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 96 - 298
Target Start/End: Original strand, 22800462 - 22800667
Alignment:
Q  96 cttagagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataannnnnnnnnaatgaaagtagct 195  Q
    ||||||||||||| |||||||||  ||||||||  ||| |||||||||||   ||||||| |||||| ||||||||||         ||  ||| |  ||    
T  22800462 cttagagcatccacaatggtagtacactaataggaactccttaaatggactccacatgtacacatcatttatttataattttttaataaaaaaaatgtct 22800561  T
Q  196 attaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataa 292  Q
    ||||| |||||   |||||||||||||||||||||||| ||||||||||| ||  ||||||||||| |||||||||||||||||||||||| |||| |||    
T  22800562 attaaggactcaatgactccaatgacaatacactaatagggactccaatgaaatgtacttaaataggtcccactaactttacatcattatacaaaagtaa 22800661  T
Q  293 tttatt 298  Q
    ||||||    
T  22800662 tttatt 22800667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 348
Target Start/End: Original strand, 14523171 - 14523316
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta----ttactt 302  Q
    |||| |||||||||||||||||||||||||||| || ||| ||||||||||  | |||||| ||||||||||||| | ||||||||||||    |||||     
T  14523171 gacttcaatgacaatacactaataaggactccactgaaaagtacttaaatatgttccactatctttacatcattaaacaaaaataatttacatattactc 14523270  T
Q  303 cttttg-caagtgggaccaaccaatacatattttattacttctttta 348  Q
    |||||  |||||||||||||  | | |||||||||||| ||||||||    
T  14523271 ctttttacaagtgggaccaagtagtgcatattttatta-ttctttta 14523316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 11989717 - 11989808
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||||| | ||||||||||| ||| | ||||||||  || |||||| ||||||||||||| ||||| |||||||||    
T  11989717 gactccaatgacaatacactaacatggactccaatgaaaagtgcttaaatatgtctcactaattttacatcattatgtaaaagtaatttatt 11989808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 45251232 - 45251303
Alignment:
Q  298 tacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgc 369  Q
    ||||||||||||||||| ||||||| | ||||| ||||||||||||||||| ||||| ||||||||||||||    
T  45251232 tacttcttttgcaagtgagaccaactagtacatgttttattacttcttttaaacgtgggacccgttagttgc 45251303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 12795955 - 12796029
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattt 295  Q
    ||||||| |||||||||||||| ||| |||||||||||  ||||||||||||||||||||| | |||||||||||    
T  12795955 tacactagtaaggactccaatgaaaagtacttaaataggccccactaactttacatcattaaacaaaaataattt 12796029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 434
Target Start/End: Complemental strand, 13282097 - 13281960
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||||||||||||||| ||||||  | ||||||| ||||||||||||||||| ||  || |||||||||||| | |||||||   ||||||||| |    
T  13282097 tattacttcttttgcaagtgagaccaagtagtacatatattattacttcttttacatgtaagatccgttagttgcctacgagagag--agtccttataga 13282000  T
Q  395 gttccccgttgcataatagagactcattttttcttccttc 434  Q
    ||  | | || | |||||  ||||||||||||||||||||    
T  13281999 gtgactcattccttaataatgactcattttttcttccttc 13281960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 431
Target Start/End: Original strand, 29637882 - 29638018
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||||||||| ||| |||||||   |||| |||||||||||||||||||||||||| ||  ||||||||||| | |||| ||   ||||||||| |    
T  29637882 tattacttcttttgtaagcgggaccacataatatatattttattacttcttttacacgtgagattcgttagttgcctaggagaaagagagtccttataca 29637981  T
Q  395 gttccccgttgcataatagagactcattttttcttcc 431  Q
     || || ||| | |||| | |||||||||||||||||    
T  29637982 attacctgttccttaatggggactcattttttcttcc 29638018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 7177375 - 7177449
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgc 369  Q
    ||||||||||||| ||||||||| |||| | |||||||||||||| |||||||| ||||| || |||||||||||    
T  7177375 tattacttcttttacaagtgggatcaactagtacatattttattaattcttttaaacgtgagatccgttagttgc 7177449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 12796294 - 12796429
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    ||||||||||||||||||||||| |||| | |||||||||||||| ||| |||| |  || ||| ||||||||||| | |||||||   ||| |||||||    
T  12796294 tattacttcttttgcaagtgggatcaactagtacatattttattaattcctttaaatttgagactcgttagttgcctaggagagag--ggtcattatata 12796391  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    |||  | ||||| |||||  ||||| ||||||||||||    
T  12796392 gttgtctgttgcttaataaggactctttttttcttcct 12796429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 22800695 - 22800830
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||||||||| ||||||| |||||  |||||||||||||||||||||||   |||| || ||||||||||| || |||||||   ||| |||||||    
T  22800695 tattacttcttttgaaagtgggcccaacttatacatattttattacttcttttgatcgtgggatccgttagttgctcaggagagag--agtcgttatata 22800792  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    ||| || ||| | |||||   || ||||||||||||||    
T  22800793 gttgcctgttacctaataagtacccattttttcttcct 22800830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 8693032 - 8693123
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||| ||||||||||| || |||||||| ||||||| ||| |  |||||||| ||| ||||||||||||| |||||| |||| |||||||||    
T  8693032 gacttcaatgacaataaaccaataaggattccaatgaaaagttgttaaataggtcctactaactttacattattatacaaaagtaatttatt 8693123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 5423567 - 5423517
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaata 257  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  5423567 gactccaatgacaatacactaataaggacttcaatgaaaagtacttaaata 5423517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 12532328 - 12532417
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    ||||||||||  ||||||||||||| || || |||| ||| |||||||| |  |||||||| ||||||||||||| | ||||||||||||    
T  12532328 gactccaatggtaatacactaataaagattctaatgaaaagtacttaaacatgtcccactatctttacatcattaaacaaaaataattta 12532417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 341
Target Start/End: Complemental strand, 43976707 - 43976594
Alignment:
Q  233 gactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatt----tattacttc-ttttgcaagtgggaccaaccaata 327  Q
    |||||||||| ||| |||||||||| ||||||||| ||||||||||||| | ||||| ||||    ||||||| | |||| |||||||||||||  | ||    
T  43976707 gactccaatgaaaagtacttaaatatatcccactatctttacatcattaaacaaaaacaattgacctattactcctttttacaagtgggaccaagtagta 43976608  T
Q  328 catattttattact 341  Q
    || |||||||||||    
T  43976607 cacattttattact 43976594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 13282221 - 13282128
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaa---tacttaaatagatcccactaactttacatcattatataaaaataatttat 297  Q
    ||||| ||||||||||||||||  || ||||| |||  |||   || ||||||||||||||||||||||||||||||| | |||| ||||||||    
T  13282221 gactctaatgacaatacactaaccagaactcccatgacaaaaagtaattaaatagatcccactaactttacatcattaaacaaaactaatttat 13282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 370
Target Start/End: Complemental strand, 41438171 - 41438096
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcc 370  Q
    |||||||| ||||| |||||||||||   ||||||||||||||||||||||||| ||| |  ||| ||||||||||    
T  41438171 tattacttattttgtaagtgggaccacataatacatattttattacttcttttaaacgcggtaccggttagttgcc 41438096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 14523317 - 14523439
Alignment:
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    |||||||||||| ||  | |||||||||||||| || ||||| |||||  ||||| ||||| | || ||||||| | |||||||||||||| | |||| |    
T  14523317 tgcaagtgggacaaagtagtacatattttattattt-ttttaaacgtgaaacccgatagttactcaggagagagaaagtccttatatagttgctcgttcc 14523415  T
Q  407 ataatagagactcattttttcttc 430  Q
     ||| | | |||||||||||||||    
T  14523416 ttaacataaactcattttttcttc 14523439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 212 - 333
Target Start/End: Complemental strand, 4898278 - 4898156
Alignment:
Q  212 caatgacaatacactaataagg-actccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttgca 310  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||  || ||||| |||||||| |||||| ||||||||||||||||||||||| ||    
T  4898278 caatgacaatacactaataagggactccaatgaaaagtacttaaataagtctcactagctttacattattatacaaaaataatttattacttcttttaca 4898179  T
Q  311 agtgggaccaaccaatacatatt 333  Q
    |||||||||||||| | ||||||    
T  4898178 agtgggaccaaccagtgcatatt 4898156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 31066332 - 31066423
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||  |||||||||||||||||||||||| |||| |||||||||    
T  31066332 gactctaatgacaatacactaatatggattccaatgaaaaatacttaaatatgtcccactaactttacatcattatacaaaagtaatttatt 31066423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 565443 - 565353
Alignment:
Q  208 actccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  565443 actccaatgacaatacactaataaggactccattgaaaagtacttaaatatgttccactaaatttagatcattataaaaaaataatttatt 565353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 2552790 - 2552655
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    |||||||||||||  ||| |||||||   ||||||||||||| |||||||| || ||||| ||| ||||||||||| | ||||||| |  ||||||||||    
T  2552790 tattacttcttttataagcgggaccacataatacatattttactacttcttctaaacgtgggactcgttagttgcctaggagagagaa--tccttatata 2552693  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    ||| |||||| | |||  | ||||||||||||||||||    
T  2552692 gttacccgttccttaacggggactcattttttcttcct 2552655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 31046367 - 31046481
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattata 283  Q
    |||||| ||||||| |||||   ||||| || ||||||||||||||| ||| | ||||  ||||||||||||||  ||| ||||||||||||||||||||    
T  31046367 aaagtatctattaaggactcaatgactctaaagacaatacactaatatggatttcaataaaaaatacttaaatatgtccgactaactttacatcattata 31046466  T
Q  284 taaaaataatttatt 298  Q
     |||| |||||||||    
T  31046467 caaaagtaatttatt 31046481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 4396312 - 4396221
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||| || || ||||| |||||||  |||| |||||||||||||||  | ||||||||||||||||||||| |||| |||||||||    
T  4396312 gactccaatggcagtatactaacaaggactttaatgaaaaatacttaaataggccacactaactttacatcattataaaaaagtaatttatt 4396221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 4740334 - 4740408
Alignment:
Q  99 agagcatccataatggtagtctactaatagagacttcttaaatggaccatacatgtaaacatcacttatttataa 173  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||||  |  |||| |||||||||||||||||    
T  4740334 agagcatccataatggtagtccactaatagaaactttttaaatggacctcatgtgtacacatcacttatttataa 4740408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 8516926 - 8517016
Alignment:
Q  207 gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttat 297  Q
    ||||| |||||||||||||||| | | ||||||||  ||||||||||||||  | |||||| ||||||||||||| | |||||||||||||    
T  8516926 gactctaatgacaatacactaacatgaactccaataaaaaatacttaaatatgttccactatctttacatcattaaacaaaaataatttat 8517016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 15958740 - 15958789
Alignment:
Q  208 actccaatgacaatacactaataaggactccaatggaaaatacttaaata 257  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15958740 actccaatgacaatacactaataaggactccaatgaaaagtacttaaata 15958789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 12883523 - 12883597
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgc 369  Q
    |||||||||||||| ||||| || |||  | ||||||||||||||||| ||||| ||||| ||||||||||||||    
T  12883523 tattacttcttttgtaagtgagatcaaatagtacatattttattactttttttaaacgtgggacccgttagttgc 12883597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 12883183 - 12883274
Alignment:
Q  207 gactccaatgacaa-tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    ||||||||||| || |||||||||||| ||||||||| ||| |||||||||| | |||||| |||||| |||||||   ||||||||||||||    
T  12883183 gactccaatgagaagtacactaataag-actccaatgaaaagtacttaaatataccccacttactttatatcattaagcaaaaataatttatt 12883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 30312968 - 30313056
Alignment:
Q  210 tccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||  |||| |||||||  |||||||||| |||||| ||||  || || ||||||||||||||||||| | ||||||||||||||    
T  30312968 tccaatggaaatatactaatatagactccaatgaaaaatatttaatcaggtctcactaactttacatcattaaacaaaaataatttatt 30313056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 30350411 - 30350476
Alignment:
Q  233 gactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataatttatt 298  Q
    |||||||||| |||||| ||||  || || ||||||||||||||||||| | ||||||||||||||    
T  30350411 gactccaatgaaaaatatttaatcaggtctcactaactttacatcattaaacaaaaataatttatt 30350476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 2553270 - 2553196
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattt 295  Q
    |||||||||||||| | || || ||| |||||||||| ||  |||||||||||||||||||   |||||||||||    
T  2553270 tacactaataaggatttcagtgaaaagtacttaaatatatttcactaactttacatcattaaccaaaaataattt 2553196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 4395727 - 4395654
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttg 368  Q
    ||||||||||||||||  ||  |||||  ||||||| ||||||||||||||||| ||||| |||  ||||||||    
T  4395727 tattacttcttttgcagatgaaaccaattaatacatgttttattacttcttttaaacgtgagacatgttagttg 4395654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 432
Target Start/End: Original strand, 15958862 - 15958986
Alignment:
Q  307 tgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagttccccgttgc 406  Q
    |||||||| ||||||  | |||| |||||||||||| ||||| ||||| || ||||||||| | || |||| ||   ||||||||||||||  ||||| |    
T  15958862 tgcaagtgagaccaagtagtacacattttattactt-ttttaaacgtgggatccgttagttactcaagagaaagatggtccttatatagttgtccgtttc 15958960  T
Q  407 ataatagagactcattttttcttcct 432  Q
     ||| || || |||||||||||||||    
T  15958961 ttaacagggattcattttttcttcct 15958986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 726 - 833
Alignment:
Q  187 aaagtagctattaaagactc---gactccaatgacaatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattata 283  Q
    |||||||||||||| |||||   |||||||||   | ||||||||||||||||| |||| ||| |||||||||||  ||||||| ||||||||||||| |    
T  726 aaagtagctattaaggactcaatgactccaataggagtacactaataaggactcaaatgaaaagtacttaaataggccccactatctttacatcattaaa 825  T
Q  284 taaaaata 291  Q
     |||||||    
T  826 caaaaata 833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 175354 - 175217
Alignment:
Q  295 tattacttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatata 394  Q
    ||||||||||||||  ||||||| |||  | ||||||||||||||||||||||| |||||  |||  ||||||||  | |||||||   | |||||||||    
T  175354 tattacttcttttggtagtgggatcaaatagtacatattttattacttcttttaaacgtgaaacctattagttgcttaggagagagagggcccttatata 175255  T
Q  395 gttccccgttgcataatagagactcattttttcttcct 432  Q
    ||| | |||| | |||| || |||||||||||||||||    
T  175254 gttgctcgttccttaatggaaactcattttttcttcct 175217  T

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Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 33242 - 33317
Alignment:
Q  221 tacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||||| | ||||||| ||||| ||| ||||||||||| || ||||| ||||||||||||| ||||||||||||||    
T  33242 tacacttacaaggacttcaatgaaaagtacttaaataggtctcactatctttacatcattaaataaaaataattta 33317  T

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Target: scaffold0086; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 432
Target Start/End: Original strand, 33569 - 33701
Alignment:
Q  299 acttcttttgcaagtgggaccaaccaatacatattttattacttcttttacacgtgtgacccgttagttgcccatgagagagcatgtccttatatagtt- 397  Q
    |||||||||| || |||||| ||  | | ||||||||||||||||||||| ||||   |||||||||||||  |||||||||   |||||| |||||||     
T  33569 acttcttttgtaaatgggactaaatagtgcatattttattacttcttttaaacgttgaacccgttagttgcttatgagagag--agtccttctatagttg 33666  T
Q  398 ccccgttgcataatagagactcattttttcttcct 432  Q
      ||||| | |||| | ||||||||||||||||||    
T  33667 ttccgttccttaatggggactcattttttcttcct 33701  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 11490 - 11567
Alignment:
Q  219 aatacactaataaggactccaatggaaaatacttaaatagatcccactaactttacatcattatataaaaataattta 296  Q
    |||| |||||||||||||| |||| ||| ||||||||||  |||||  | ||||||||||||| | ||||||||||||    
T  11490 aatatactaataaggactcaaatgaaaagtacttaaatatgtcccataatctttacatcattaaacaaaaataattta 11567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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