View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7810_low_6 (Length: 404)

Name: NF7810_low_6
Description: NF7810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7810_low_6
NF7810_low_6
[»] chr4 (5 HSPs)
chr4 (10-388)||(54608772-54609150)
chr4 (214-281)||(37310024-37310091)
chr4 (230-300)||(39023188-39023258)
chr4 (230-300)||(45849060-45849130)
chr4 (220-260)||(6841540-6841580)
[»] chr7 (1 HSPs)
chr7 (223-300)||(48674549-48674626)
[»] chr5 (4 HSPs)
chr5 (226-303)||(10241734-10241811)
chr5 (223-298)||(10758793-10758868)
chr5 (230-300)||(11146516-11146586)
chr5 (226-300)||(19891413-19891487)
[»] chr6 (7 HSPs)
chr6 (226-300)||(7418287-7418361)
chr6 (230-300)||(7865342-7865412)
chr6 (230-300)||(9372188-9372258)
chr6 (223-260)||(15285549-15285586)
chr6 (223-300)||(29284272-29284349)
chr6 (235-300)||(30916339-30916404)
chr6 (221-300)||(32412299-32412379)
[»] chr8 (6 HSPs)
chr8 (230-260)||(8971539-8971569)
chr8 (226-300)||(13406609-13406683)
chr8 (226-260)||(36918501-36918535)
chr8 (223-300)||(10573107-10573184)
chr8 (235-300)||(24790311-24790376)
chr8 (208-300)||(11289410-11289502)
[»] chr3 (1 HSPs)
chr3 (226-300)||(53752687-53752761)
[»] chr2 (2 HSPs)
chr2 (226-300)||(17601088-17601162)
chr2 (235-300)||(27016295-27016360)
[»] chr1 (2 HSPs)
chr1 (226-300)||(3560368-3560442)
chr1 (226-300)||(15390229-15390303)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 54609150 - 54608772
Alignment:
Q  10 attatacttatcattcggtaccctaacccaaattttgtttcgatgtgtcaatgtagcccgattcaaattcaaaattcaagcttaccatccagattccaga 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54609150 attatacttatccttcggtaccctaacccaaattttgtttcgatgtgtcaatgtagcccgattcaaattcaaaattcaagcttaccatccagattccaga 54609051  T
Q  110 gtaatagatttcatctcaatatattaagtgacattcttttaatccacatttgatccccaaataaannnnnnngcttctttgcatatagaaacgggaataa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||    
T  54609050 gtaatagatttcatctcaatatattaagtgacattcttttaatccacatttgatccccaaataaattcctttgcttctttacatatagaaacgggaataa 54608951  T
Q  210 aagaatcttcataagtttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctccagaaaatata 309  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||| ||||||||    
T  54608950 aagaatcttcttaagtttaactcatttagtaaggatattacatattatatgtcggggttggaatttgaaccctggagactccacttctccataaaatata 54608851  T
Q  310 agagatgactagataacattaataagtgaagattggggaagagtcactcttcttgcacgagaaagagagttgtccttcc 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54608850 agagatgactagataacattaataagtgaagattggggaagagtcactcttcttgcacgagaaagagagttgtccttcc 54608772  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 37310024 - 37310091
Alignment:
Q  214 atcttcataagtttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccc 281  Q
    |||||| | ||||||||||| |||||| ||||||| |||||||||||  |||||||| ||| ||||||    
T  37310024 atcttcgtgagtttaactcagttggtatggatattgcatattatatgtaggggttggggttcaaaccc 37310091  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 39023188 - 39023258
Alignment:
Q  230 ctcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||| |||||| ||||||| |||||||||||  ||||| || |||  ||||||||| ||||||||||||||    
T  39023188 ctcagttggtagggatattgcatattatatgcaggggtcggggttcgaaccctggacactccacttctcca 39023258  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 45849060 - 45849130
Alignment:
Q  230 ctcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||| |||||| ||||||| |||||| ||||  |||| |||||||  ||||||||| ||||||||||||||    
T  45849060 ctcagttggtagggatattgcatattttatgcaggggctggagttcgaaccctggacactccacttctcca 45849130  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 6841580 - 6841540
Alignment:
Q  220 ataagtttaactcatttggtaaggatattacatattatatg 260  Q
    |||||||||||||| |||||||||| |||||||| ||||||    
T  6841580 ataagtttaactcagttggtaaggacattacataatatatg 6841540  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 48674626 - 48674549
Alignment:
Q  223 agtttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    ||||||||||| ||| |||||||||| ||| |||||||  |||||||| ||| |||||| ||| ||||||||||||||    
T  48674626 agtttaactcagttgataaggatattgcattttatatgcaggggttggggttcaaaccccggacactccacttctcca 48674549  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 10241734 - 10241811
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctccagaa 303  Q
    |||||||| |||||| ||||||| |||||||||||  |||||||| ||| ||||||  || |||||||||||||||||    
T  10241734 ttaactcagttggtagggatattgcatattatatgcaggggttggggttcaaaccccagacactccacttctccagaa 10241811  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 10758868 - 10758793
Alignment:
Q  223 agtttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctc 298  Q
    |||||| |||| ||||||| |||||| |||||||||||  |||| ||| ||||||||||  || ||||||||||||    
T  10758868 agtttagctcaattggtaaagatattgcatattatatgtaggggctggggtttaaaccccagacactccacttctc 10758793  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 11146586 - 11146516
Alignment:
Q  230 ctcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||| ||| |||||||||| ||| |||||||  ||||||||||||  ||||| ||| ||||||||||||||    
T  11146586 ctcagttgataaggatattgcatgttatatgtaggggttggagttcgaaccccggacactccacttctcca 11146516  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 19891487 - 19891413
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||||| |||||||||||||| ||| |||||||  |||||||| |||  || || ||| ||||||||||||||    
T  19891487 ttaactcagttggtaaggatattgcattttatatgcaggggttggggttcgaatcccggatactccacttctcca 19891413  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 7418287 - 7418361
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    ||||||||||||||| ||||||| |||||||||||  ||||   |||||  ||||||||| ||||||||||||||    
T  7418287 ttaactcatttggtagggatattgcatattatatgcaggggcctgagttcgaaccctggacactccacttctcca 7418361  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 7865412 - 7865342
Alignment:
Q  230 ctcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||| |||||| ||||||| |||||||||||  ||||  || |||| ||||||||| ||||||||||||||    
T  7865412 ctcagttggtagggatattgcatattatatgcaggggccggggtttgaaccctggacactccacttctcca 7865342  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 9372258 - 9372188
Alignment:
Q  230 ctcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||| |||||| ||||||| |||||||||||  ||||| || |||  ||||||||| ||||||||||||||    
T  9372258 ctcagttggtagggatattgcatattatatgcaggggtcggggttcgaaccctggacactccacttctcca 9372188  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 15285549 - 15285586
Alignment:
Q  223 agtttaactcatttggtaaggatattacatattatatg 260  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  15285549 agtttaactcagttggtagggatattacatattatatg 15285586  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 29284272 - 29284349
Alignment:
Q  223 agtttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||| |||| |||||| ||||||| |||||||||||| ||||  ||||||  ||||| ||| || |||||||||||    
T  29284272 agtttagctcagttggtagggatattgcatattatatgaaggggccggagttcgaaccccggacaccccacttctcca 29284349  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 30916339 - 30916404
Alignment:
Q  235 ttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||| ||||||| ||| |||||||  |||||||| |||  ||||||||| ||||||||||||||    
T  30916339 ttggtagggatattgcatgttatatgcgggggttggggttcgaaccctggacactccacttctcca 30916404  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 32412379 - 32412299
Alignment:
Q  221 taagtttaactcatttggtaaggatattacatattatatg-acggggttggagtttaaaccctggaaactccacttctcca 300  Q
    ||||||||| ||| |||||| ||||||| ||||||||||| | |||| |||||||  || || ||| ||||||||||||||    
T  32412379 taagtttaattcagttggtagggatattgcatattatatgcagggggctggagttcgaatcccggacactccacttctcca 32412299  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 260
Target Start/End: Complemental strand, 8971569 - 8971539
Alignment:
Q  230 ctcatttggtaaggatattacatattatatg 260  Q
    |||||||||||||||||||||||||||||||    
T  8971569 ctcatttggtaaggatattacatattatatg 8971539  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 13406609 - 13406683
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||||| |||||| ||||||| |||||||||||  || |  ||||||  ||||||||| ||||||||||||||    
T  13406609 ttaactcagttggtagggatattgcatattatatgcaggagccggagttcgaaccctggacactccacttctcca 13406683  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 36918501 - 36918535
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatg 260  Q
    |||||||| ||||||||||||||||||||||||||    
T  36918501 ttaactcagttggtaaggatattacatattatatg 36918535  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 10573107 - 10573184
Alignment:
Q  223 agtttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||| |||| |||||| ||||||| |||||||||||  |||||||| |||  ||||| | | ||||||||||||||    
T  10573107 agtttagctcagttggtagggatattgcatattatatgcaggggttggggttcgaaccccgaacactccacttctcca 10573184  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 24790376 - 24790311
Alignment:
Q  235 ttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||| |||||||||||||||||||  |||||||| |||  ||||||||| || |||||| ||||    
T  24790376 ttggtagggatattacatattatatgtaggggttggggttcgaaccctggacaccccacttttcca 24790311  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 11289502 - 11289410
Alignment:
Q  208 aaaagaatcttcataagtttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||| ||||||| | |||||| |||||||| || ||||||| ||| |||||||  |||| ||| |||  ||||||||| | ||||||||||||    
T  11289502 aaaacaatcttcgtgagtttagctcatttgatagggatattgcattttatatgtaggggctggggttcgaaccctggacattccacttctcca 11289410  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 53752761 - 53752687
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||||| |||||| ||||||  |||||||||||  ||||  ||||||  ||||||||| ||||||||||||||    
T  53752761 ttaactcagttggtagggatatggcatattatatgcaggggcaggagttcgaaccctggacactccacttctcca 53752687  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 17601088 - 17601162
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||||| |||||| ||||||| ||||| |||||  ||||| ||||||  |||| |||| ||||||||||||||    
T  17601088 ttaactcagttggtagggatattgcatatcatatgcaggggtcggagttcgaaccatggacactccacttctcca 17601162  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 27016295 - 27016360
Alignment:
Q  235 ttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||| ||||||| ||||||||||   ||||| ||||||  ||||||||| ||||||||||||||    
T  27016295 ttggtatggatattgcatattatatacaggggtcggagttcgaaccctggacactccacttctcca 27016360  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 3560442 - 3560368
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||||| |||||| |||||||| ||||||||||  |||| |||||||  |||||  || ||||||||||||||    
T  3560442 ttaactcagttggtagggatattatatattatatgcaggggctggagttcgaaccccagatactccacttctcca 3560368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 15390229 - 15390303
Alignment:
Q  226 ttaactcatttggtaaggatattacatattatatgacggggttggagtttaaaccctggaaactccacttctcca 300  Q
    |||||||| |||||| ||||||| ||||||| |||  ||||||||  ||  ||||||||| ||||||||||||||    
T  15390229 ttaactcagttggtagggatattgcatattagatgcaggggttgggattcgaaccctggacactccacttctcca 15390303  T

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