View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7810_low_8 (Length: 307)
Name: NF7810_low_8
Description: NF7810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7810_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 26392733 - 26393017
Alignment:
| Q |
15 |
aagaacaacagtagcttgcatgtgaatgatttagttttcaatggaagattttccataaagctcatttaaaaaatttccaattccactttacctttaatat |
114 |
Q |
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| T |
26392733 |
aagaacaacagtagcttgcatgtgaatgatttagttttcaatggaagattttccataaagctcatttaaaaaatttccaattccactttacctttaatat |
26392832 |
T |
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| Q |
115 |
atctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcattttcccgtctactttgctcttatga |
214 |
Q |
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| T |
26392833 |
atctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgtattttcccgtctactttgctcttatga |
26392932 |
T |
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| Q |
215 |
tcccaatcaacaagttcttgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatatattctt |
299 |
Q |
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| T |
26392933 |
tcccaatcaacaagttcctgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatattttctt |
26393017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 26264543 - 26264265
Alignment:
| Q |
15 |
aagaacaacagtagcttgcatgtgaatgatttagttttcaatggaagattttccataaagctcatttaaaaaatttccaattccactttacctttaatat |
114 |
Q |
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| T |
26264543 |
aagaacaacagtagcctgcatgcgaagtatttagttttcaatggaagattgcccataaagctcatttaaattttttgcaattccactttacctttaattt |
26264444 |
T |
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| Q |
115 |
atctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcattttcccgtctactttgctcttatga |
214 |
Q |
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| T |
26264443 |
atttttcatttcttgcagtatctttgcagcaccgagaagcatcgcaacatgggcatcgtgtgcacaagcatgcattttcccatctactttgctcttatga |
26264344 |
T |
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| Q |
215 |
tcccaatcaacaagttcttgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatat |
293 |
Q |
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| T |
26264343 |
tcccaatcaacaagttcctgtgggcaggaagtatagaccagattaaggatttgacgggaacaaacttactgtcctatat |
26264265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 31838645 - 31838782
Alignment:
| Q |
88 |
tttccaattccactttacctttaatatatctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgc |
187 |
Q |
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| T |
31838645 |
tttccaattccactttacctttaacttgtctttcatttcttgcagtatctttgcagcaccaagaagcatcgccacatgtgcatcgtgcgcacaagcatgc |
31838744 |
T |
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| Q |
188 |
attttcccgtctactttgctcttatgatcccaatcaac |
225 |
Q |
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| T |
31838745 |
atttttccgtctactttgcttttatgatcccaatcaac |
31838782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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