View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7811_high_16 (Length: 406)
Name: NF7811_high_16
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_high_16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 51153225 - 51152837
Alignment:
| Q |
18 |
aaatgtacttattgtttgtttaagttcctagctatcacattcctacatcagggttccttagtcaccactattnnnnnnncaggcagtaacatgcactaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51153225 |
aaatgtacttattgtttgtttaagttcctagctatcatattcctacatcagggttccttagtcaccactattaaaaaaacaggcagtaacatgcactaaa |
51153126 |
T |
|
| Q |
118 |
tcaactcggccatcaattggagattagtcagctcacattacaacttcatcaaatcatatttaagtaatcttcccgattgatttgagatctgactgccatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153125 |
tcaactcggccatcaattggagattagtcagctcacattacaacttcatcaaatcatatttaagtaatcttcccgattgatttgagatctgactgccatg |
51153026 |
T |
|
| Q |
218 |
atcaataaatgtgtcaacattattgcatggacctcaaatcccctgtaaaagctaattcaacttcatgcctacatgttacatgaaccaaatcaactatcta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153025 |
atcaataaatgtgtcaacattattgcatggacctcaaatcccctgcaaaagctaattcaacttcatgcctacatgttacatgaaccaaatcaactatcta |
51152926 |
T |
|
| Q |
318 |
caggtcttaagaagcccaacctaggaatattactaaatgcaaatgaatatttacagttactaagatgaaccaatgtcttggtaaatggt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51152925 |
caggtcttaagaagcccaacctaggaatattactaaatgcaaatgaatatttacagttactaagatgaaccaatgtcttggtaaatggt |
51152837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 9908985 - 9908945
Alignment:
| Q |
193 |
attgatttgagatctgactgccatgatcaataaatgtgtca |
233 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
9908985 |
attgatttgagatttgacggccaagatcaataaatgtgtca |
9908945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University