View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_high_20 (Length: 382)

Name: NF7811_high_20
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_high_20
NF7811_high_20
[»] chr8 (1 HSPs)
chr8 (16-364)||(35619436-35619784)
[»] chr7 (2 HSPs)
chr7 (239-306)||(1528993-1529060)
chr7 (90-166)||(19813052-19813128)
[»] chr1 (1 HSPs)
chr1 (293-352)||(2361682-2361741)
[»] chr6 (1 HSPs)
chr6 (138-193)||(6567983-6568038)
[»] chr3 (2 HSPs)
chr3 (261-352)||(4643015-4643106)
chr3 (99-166)||(44666826-44666893)
[»] chr4 (1 HSPs)
chr4 (99-167)||(14040708-14040776)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 35619436 - 35619784
Alignment:
Q  16 atccgttctatattcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcactcaacaattaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35619436 atccgttctatattcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcactcaacaattaag 35619535  T
Q  116 ccaacttctcagcaaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatatatcttctttcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35619536 ccaacttctcagcaaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatatatcttctttcc 35619635  T
Q  216 tagagcctcatctttgcagattcaaggatacaagacgttccattccaggccaatgcttcttccttggtcaatcacttatctcttggagaacaaagaagta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  35619636 tagagcctcatctttgcagattcaaggatacaagacgttccattccaggccaatgcttcttccttggtcaatcacttatttcttggagaacaaagaagca 35619735  T
Q  316 ggttacggtctctagatcttcatctgaagctgaatattgtgtcttggct 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35619736 ggttacggtctctagatcttcatctgaagctgaatattgtgtcttggct 35619784  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 1529060 - 1528993
Alignment:
Q  239 aaggatacaagacgttccattccaggccaatgcttcttccttggtcaatcacttatctcttggagaac 306  Q
    |||||||| |||||||||||| |||| || |||||||| |||| |||||| ||||| |||||||||||    
T  1529060 aaggatactagacgttccatttcaggacattgcttctttcttgatcaatcccttatttcttggagaac 1528993  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 19813128 - 19813052
Alignment:
Q  90 attacctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt 166  Q
    ||||||| ||| || |||||||| |||||  |||||  |||||||||||| | ||| |||||||| |||||||||||    
T  19813128 attacctttattacacaacaattgagccagtttctctccaaacctacacacattcactataatgctgctatgagagt 19813052  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 2361682 - 2361741
Alignment:
Q  293 atctcttggagaacaaagaagtaggttacggtctctagatcttcatctgaagctgaatat 352  Q
    ||||||||||||||||||||  |  | || ||||||||||||||||||||||||||||||    
T  2361682 atctcttggagaacaaagaaacaaatcacagtctctagatcttcatctgaagctgaatat 2361741  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 6568038 - 6567983
Alignment:
Q  138 caaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcagg 193  Q
    |||||||| || ||||| | |||||||||||| |||||||||||||||||| ||||    
T  6568038 caaactcactacaatgctggtatgagagttctcaaatatctcaaaggatgtccagg 6567983  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 4643106 - 4643015
Alignment:
Q  261 caggccaatgcttcttccttggtcaatcacttatctcttggagaacaaagaagtaggttacggtctctagatcttcatctgaagctgaatat 352  Q
    |||||||||||||||| ||||| | |||||| ||||||||||| || |||||  || | || ||||| |||||||| || |||| |||||||    
T  4643106 caggccaatgcttctttcttggcccatcactgatctcttggaggactaagaaacagttgactgtctccagatcttcttcagaagttgaatat 4643015  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 44666893 - 44666826
Alignment:
Q  99 atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt 166  Q
    ||||| ||||||||||||||| ||||    ||||| |||||||||||| ||||||||||| |||||||    
T  44666893 atcacacaacaattaagccaatttctttctaaaccaacacaaactcatcataatgcagctctgagagt 44666826  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 14040708 - 14040776
Alignment:
Q  99 atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagtt 167  Q
    |||||||||||| | || ||| ||||||| ||||||||||| || ||||| ||||| ||| ||||||||    
T  14040708 atcactcaacaacttagtcaatttctcagtaaacctacacatacccattacaatgctgctctgagagtt 14040776  T

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