View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_high_23 (Length: 367)

Name: NF7811_high_23
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_high_23
NF7811_high_23
[»] chr8 (3 HSPs)
chr8 (16-110)||(4608512-4608606)
chr8 (170-243)||(4608379-4608452)
chr8 (307-356)||(4608266-4608315)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 4608606 - 4608512
Alignment:
Q  16 aaaacaagtggagtttagtgcaaaaatctaaagaatctaaacattaaggaaaatattattcaataccagataagtgctcaatagacaaacggtgg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4608606 aaaacaagtggagtttagtgcaaaaatctaaagaatctaaacattaaggaaaatattattcaataccaaataagtgctcaatagacaaacggtgg 4608512  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 4608452 - 4608379
Alignment:
Q  170 cttctgacactagctcgtgaagaactgtattacatgacaaaaagatgtcacagaaagttatcagagagaggctc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4608452 cttctgacactagctcgtgaagaactgtattacatgacaaaaagatgtcacagaaagttatcagagagaggctc 4608379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 4608315 - 4608266
Alignment:
Q  307 cccattagaatattacttgcataaaacttcaaaatctaaaacaccttcat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4608315 cccattagaatattacttgcataaaacttcaaaatctaaaacaccttcat 4608266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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