View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7811_high_43 (Length: 265)
Name: NF7811_high_43
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_high_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 33817448 - 33817621
Alignment:
| Q |
1 |
atttactcgaataacttgacttattggactttctcggcaaatctacctttctcgatggatcaactccaaatcatttctaaggtttggaagagtgttaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33817448 |
atttactcgaataacttgacttattggactctctcggcaaatctatctttctcgatggatcaactccaaatcatttctaaggtttggaagagtgttaatc |
33817547 |
T |
|
| Q |
101 |
cggaaaaagatatcgcattttcttggaaactgctcctcgacaaggtcccgactcatcaaagtcttatgttgtcc |
174 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33817548 |
cggaaaaagttatcgcattttcttgaaaactgctcctcgacaaggccccgactcatcaaagtcttatgttgtcc |
33817621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 33817608 - 33817653
Alignment:
| Q |
192 |
gtcttatgttgtccatcttgtaatgagtttgagactttgaatactcc |
238 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
33817608 |
gtcttatgttgtccatcttgtaatgcgtttgagac-ttgaatactcc |
33817653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University