View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_high_53 (Length: 246)

Name: NF7811_high_53
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_high_53
NF7811_high_53
[»] chr3 (10 HSPs)
chr3 (32-236)||(23420217-23420421)
chr3 (18-174)||(23466671-23466826)
chr3 (88-217)||(25045413-25045545)
chr3 (154-235)||(42029222-42029304)
chr3 (83-128)||(39439908-39439953)
chr3 (82-128)||(27011216-27011262)
chr3 (94-208)||(32278405-32278522)
chr3 (154-215)||(40024808-40024869)
chr3 (154-210)||(25909452-25909509)
chr3 (88-128)||(42029333-42029373)
[»] chr7 (5 HSPs)
chr7 (153-212)||(261710-261769)
chr7 (159-208)||(35759848-35759897)
chr7 (82-209)||(12633459-12633592)
chr7 (154-193)||(23417196-23417235)
chr7 (88-128)||(19625458-19625498)
[»] scaffold0022 (2 HSPs)
scaffold0022 (83-219)||(44073-44212)
scaffold0022 (83-219)||(77794-77933)
[»] chr5 (3 HSPs)
chr5 (88-217)||(30084941-30085073)
chr5 (88-235)||(4943568-4943719)
chr5 (83-128)||(11617270-11617315)
[»] scaffold0224 (1 HSPs)
scaffold0224 (88-236)||(12360-12511)
[»] scaffold0127 (1 HSPs)
scaffold0127 (154-209)||(30102-30157)
[»] chr1 (14 HSPs)
chr1 (154-209)||(41404178-41404233)
chr1 (88-236)||(42934260-42934411)
chr1 (163-212)||(7521239-7521288)
chr1 (82-128)||(48046433-48046479)
chr1 (155-220)||(39793688-39793753)
chr1 (82-125)||(16302758-16302801)
chr1 (83-128)||(42365918-42365963)
chr1 (88-128)||(15581607-15581647)
chr1 (88-143)||(7741146-7741201)
chr1 (154-193)||(50678132-50678171)
chr1 (155-193)||(42365993-42366031)
chr1 (82-128)||(50678183-50678229)
chr1 (83-128)||(49764933-49764978)
chr1 (88-128)||(34969816-34969856)
[»] chr4 (12 HSPs)
chr4 (83-213)||(46944082-46944215)
chr4 (90-204)||(50859210-50859327)
chr4 (83-128)||(3121264-3121309)
chr4 (88-220)||(4292596-4292728)
chr4 (88-128)||(22405077-22405117)
chr4 (88-217)||(35033773-35033905)
chr4 (154-209)||(41809856-41809911)
chr4 (82-204)||(35292080-35292205)
chr4 (88-228)||(21263527-21263671)
chr4 (83-147)||(31227734-31227797)
chr4 (83-147)||(48084718-48084781)
chr4 (83-124)||(41223714-41223755)
[»] chr2 (8 HSPs)
chr2 (88-235)||(28219059-28219210)
chr2 (83-148)||(7444706-7444770)
chr2 (88-128)||(44246372-44246412)
chr2 (88-212)||(1499183-1499310)
chr2 (158-217)||(28199170-28199229)
chr2 (82-128)||(10354290-10354336)
chr2 (154-192)||(44246441-44246479)
chr2 (154-207)||(17999914-17999967)
[»] scaffold0110 (1 HSPs)
scaffold0110 (88-193)||(38553-38661)
[»] chr8 (4 HSPs)
chr8 (83-127)||(38679777-38679821)
chr8 (83-124)||(34924794-34924835)
chr8 (83-128)||(42025398-42025443)
chr8 (88-128)||(30800223-30800263)
[»] scaffold0227 (1 HSPs)
scaffold0227 (88-128)||(239-279)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 23420217 - 23420421
Alignment:
Q  32 gaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaatagaatggaatggagtgtaatggaactcattccatccaatacccac 131  Q
    ||||||||| ||||||||||||||||||||| ||||||            ||||||||||||| ||||||||||||||||||||| ||||||||||| ||    
T  23420217 gaagtgggatagattcacattctattgtttggttttgtaaaaaaaa----ggaatagaatggagtggagtgtaatggaactcattacatccaatacc-ac 23420311  T
Q  132 ctatttaaccaattttccaaatc-----aatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttgtccttacttttgattcc 226  Q
    |||||||||||||||||||| ||     | | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  23420312 ctatttaaccaattttccaattcctcccattgtggggtgtatgcaatgaaatgaaacacattaataacacaattacaattttgtccctacttttgattcc 23420411  T
Q  227 cctatttcat 236  Q
    ||||||||||    
T  23420412 cctatttcat 23420421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 23466671 - 23466826
Alignment:
Q  18 gaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaatagaatggaatggagtgtaatggaactcattc 117  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||            |||||||||||||||| ||||||||||||||||||     
T  23466671 gaatggaattgaatgaagtgggatagattcacattctattgtttggttttgtaaaaaaa-----ggaatagaatggaatgtagtgtaatggaactcattg 23466765  T
Q  118 catccaatacccacctatttaaccaattttccaaat-----caatttggggtgtatgcaatg 174  Q
    ||||||||| |||||||||||||||||||||||  |     |||||||||||||||||||||    
T  23466766 catccaata-ccacctatttaaccaattttccagttcctcccaatttggggtgtatgcaatg 23466826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 25045413 - 25045545
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||  ||| | |||||||||||       ||| |||| |||||| ||||| ||||||||    
T  25045413 gaatggaatggaatgtgatggaactcattccatccaata-ccactcattcatccaattttccattcctcccaaattggtgtgtatccaatggaatggaac 25045511  T
Q  184 acattaataacacaattacaattttgtccttact 217  Q
    ||||||||||| |||||||| |||| ||| ||||    
T  25045512 acattaataactcaattacatttttatccctact 25045545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 42029304 - 42029222
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaac-acattaataacacaattacaattttgtccttacttttgattcccctatttca 235  Q
    ||||||||||||||| ||||| |||||||| |||||||||| | |||||| |||||||||| | |||| ||||||| ||||||    
T  42029304 caatttggggtgtatccaatggaatggaaccacattaataatataattaccattttgtcctcaattttcattccccaatttca 42029222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 39439953 - 39439908
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  39439953 gaatggaatggaatggagtgtgatggaactcattccatccaatacc 39439908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 27011216 - 27011262
Alignment:
Q  82 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  27011216 ggaatggaatggaatggagtgtgatggaacccattccatccaatacc 27011262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 32278405 - 32278522
Alignment:
Q  94 aatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttccaaatc----aatttggggtgtatgcaatgtaatggaacacatta 189  Q
    |||||| ||| |||||||||||||||||||||||| ||  ||| | |||||||||||   |    || ||||||||||| ||||| ||| ||||||||||    
T  32278405 aatggaatgtgatggaactcattccatccaatacc-actcattcatccaattttccattcctcccaaattggggtgtatccaatggaattgaacacatta 32278503  T
Q  190 ataacacaattacaatttt 208  Q
    ||||| |||||||| ||||    
T  32278504 ataactcaattacattttt 32278522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 40024869 - 40024808
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttgtcctta 215  Q
    ||||||||||||||| ||||| |||||||||||||||||| |  ||||||| ||| ||||||    
T  40024869 caatttggggtgtatccaatggaatggaacacattaataataatattacaactttatcctta 40024808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 25909452 - 25909509
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaac-acattaataacacaattacaattttgt 210  Q
    ||||||||||||||||||||| |||||||| || |||||||   ||||||||||||||    
T  25909452 caatttggggtgtatgcaatgaaatggaacaaccttaataatgtaattacaattttgt 25909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 42029373 - 42029333
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  42029373 gaatggaatggagtatgatggaacccattccatccaatacc 42029333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 261769 - 261710
Alignment:
Q  153 tcaatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttgtcc 212  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  261769 tcaatttggggtgtatccaatgaaatggaacacattaataacacaattacaattttgtcc 261710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 35759848 - 35759897
Alignment:
Q  159 tggggtgtatgcaatgtaatggaacacattaataacacaattacaatttt 208  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  35759848 tggggtgtatgcaatggaatggaacacattaataattcaattacaatttt 35759897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 12633459 - 12633592
Alignment:
Q  82 ggaatagaatggaatggagtgtaatggaactcattccatc---caatacccacctatttaaccaattttccaaatc----aatttggggtgtatgcaatg 174  Q
    ||||| ||||||| |||||||| |||||||||||||||||   ||||||| ||  ||||| |||||||||||   |    || || |||||||| |||||    
T  12633459 ggaatggaatggagtggagtgtgatggaactcattccatcgaccaatacc-actcatttagccaattttccattcctcccaaattagggtgtatccaatg 12633557  T
Q  175 taatggaacacattaataacacaattacaattttg 209  Q
     |||| || |||||||||| |||||||||||||||    
T  12633558 gaatgaaatacattaataatacaattacaattttg 12633592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 23417235 - 23417196
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaataa 193  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  23417235 caatttggggtgtatccaatggaatggaacacattaataa 23417196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 19625458 - 19625498
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  19625458 gaatggaatggaatgtgatggaactaattccatccaatacc 19625498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 44212 - 44073
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaat 178  Q
    |||| |||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||       ||||||| |||||   ||||| |||    
T  44212 gaatggaatggaatggagtgtgatggaacccattccatccaata-ccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaat 44114  T
Q  179 ggaacacattaataacacaattacaattttgtccttacttt 219  Q
    | ||||||||||||| ||||||||||  |||||| ||||||    
T  44113 gaaacacattaataagacaattacaacattgtccctacttt 44073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 77933 - 77794
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaat 178  Q
    |||| |||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||       ||||||| |||||   ||||| |||    
T  77933 gaatggaatggaatggagtgtgatggaacccattccatccaata-ccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaat 77835  T
Q  179 ggaacacattaataacacaattacaattttgtccttacttt 219  Q
    | ||||||||||||| ||||||||||  |||||| ||||||    
T  77834 gaaacacattaataagacaattacaacattgtccctacttt 77794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 30084941 - 30085073
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttccaaatc----aatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||| ||| |||||||||||||||||||||||| ||  ||| | |||||||||||   |    || ||||||||||| ||||| ||||||||    
T  30084941 gaatggaatggaatgtgatggaactcattccatccaatacc-actcattcatccaattttccattcctcccaaattggggtgtatccaatggaatggaac 30085039  T
Q  184 acattaataacacaattacaattttgtccttact 217  Q
    ||||||||||| |||||||| |||| ||| ||||    
T  30085040 acattaataactcaattacatttttatccctact 30085073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 4943568 - 4943719
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||  |||    ||||||||||    |  ||||||||||||| | ||||| ||||||||    
T  4943568 gaatggaatggagtgtgatggaacccattccatccaatacc-actcattccttcaattttccattccacccaatttggggtgtttccaatggaatggaac 4943666  T
Q  184 -acattaataacacaattacaattttgtccttacttttgattcccctatttca 235  Q
     |||||||||| | |||||| |||||||||| |||||| ||||||| ||||||    
T  4943667 cacattaataatataattaccattttgtcctcacttttcattccccaatttca 4943719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 11617270 - 11617315
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  11617270 gaatggaatggaatggagtgtgatggaactcattccatccaatacc 11617315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 12511 - 12360
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||  |||    ||||||||||    |  ||||||| ||||||| ||||  ||||||||    
T  12511 gaatggaatggagtgtgatggaacccattccatccaatacc-actcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaac 12413  T
Q  184 acattaataacacaattacaattttgtccttacttttgattcccctatttcat 236  Q
    |||| ||||| | |||||| |||||||||||| |||| ||||||| |||||||    
T  12412 acatcaataatataattaccattttgtccttatttttcattccccaatttcat 12360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 30157 - 30102
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttg 209  Q
    ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  30157 caatttggggtgtatccaatgaaatggaacacattaataagacaattacaattttg 30102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 41404178 - 41404233
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttg 209  Q
    ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  41404178 caatttggggtgtatccaatgaaatggaacacattaataagacaattacaattttg 41404233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 42934260 - 42934411
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||  |||    ||||||||||    |  ||||||| ||||||| ||||  ||||||||    
T  42934260 gaatggaatggagtgtgatggaacccattccatccaatacc-actcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaac 42934358  T
Q  184 acattaataacacaattacaattttgtccttacttttgattcccctatttcat 236  Q
    |||| ||||| | |||||| |||||||||||| |||| ||||||| |||||||    
T  42934359 acatcaataatataattaccattttgtccttatttttcattccccaatttcat 42934411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 7521239 - 7521288
Alignment:
Q  163 gtgtatgcaatgtaatggaacacattaataacacaattacaattttgtcc 212  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  7521239 gtgtattcaatggaatggaacacattaataacacaattacaattttgtcc 7521288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 48046433 - 48046479
Alignment:
Q  82 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  48046433 ggaatggaatggaatggagtgtgatggaactcattccatccaatacc 48046479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 39793688 - 39793753
Alignment:
Q  155 aatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttgtccttactttt 220  Q
    ||||| |||||||| ||||| |||||||||||||||||| ||||||||||  ||||||||| ||||    
T  39793688 aatttagggtgtatccaatgaaatggaacacattaataatacaattacaacattgtccttattttt 39793753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 16302801 - 16302758
Alignment:
Q  82 ggaatagaatggaatggagtgtaatggaactcattccatccaat 125  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  16302801 ggaatggaatggaatggagtgtgatggaactcattccatccaat 16302758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 42365918 - 42365963
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||    
T  42365918 gaatggaatggaatggagtgtgatggaacccattccatccaatacc 42365963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 15581607 - 15581647
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  15581607 gaatggaatggagtgtgatggaacccattccatccaatacc 15581647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 7741146 - 7741201
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaa 143  Q
    ||||||||| |||||| ||||||| |||||| ||||||||||| | ||||||||||    
T  7741146 gaatggaatagagtgtgatggaacccattccttccaatacccatccatttaaccaa 7741201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 50678171 - 50678132
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaataa 193  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  50678171 caatttggggtgtatccaatggaatggaacacattaataa 50678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 42365993 - 42366031
Alignment:
Q  155 aatttggggtgtatgcaatgtaatggaacacattaataa 193  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  42365993 aatttggggtgtatccaatggaatggaacacattaataa 42366031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 50678229 - 50678183
Alignment:
Q  82 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||||||    
T  50678229 ggaatggaatggaatggagtgtgatggaacccattctatccaatacc 50678183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 49764933 - 49764978
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||| |||||||||||| | |||||||||||| |||||||||||    
T  49764933 gaataggatggaatggagtatgatggaactcatttcatccaatacc 49764978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 34969816 - 34969856
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  34969816 gaatggaatgaagtgtgatggaacccattccatccaatacc 34969856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 46944082 - 46944215
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaat 178  Q
    |||| |||||||||||||||| |||||||||||||||||||||| ||||  ||||   ||||||||||    |  ||||||||||||||| ||||| |||    
T  46944082 gaatggaatggaatggagtgtgatggaactcattccatccaata-ccactcattttgtcaattttccattccacccaatttggggtgtatccaatggaat 46944180  T
Q  179 ggaacacattaataacacaattacaattttgtcct 213  Q
    | | ||||||||||| | ||||||||  |||||||    
T  46944181 gtagcacattaataatataattacaacattgtcct 46944215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 50859210 - 50859327
Alignment:
Q  90 atggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttccaaatc----aatttggggtgtatgcaatgtaatggaacac 185  Q
    |||||||||||||| |||||| ||||||||||||||||| ||| ||||| |||| ||  ||   |    |||||||||||||| ||||| ||||||||||    
T  50859210 atggaatggagtgtgatggaattcattccatccaatacc-acccatttagccaaattgtcattcctcccaatttggggtgtatccaatggaatggaacac 50859308  T
Q  186 attaataacacaattacaa 204  Q
    |||||||| ||||||||||    
T  50859309 attaataatacaattacaa 50859327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 3121264 - 3121309
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  3121264 gaatggaatggaatggagtgtgatggaactcattccatccaatacc 3121309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 4292728 - 4292596
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||   |||||| | |||||||      |||||||||   |||| ||||| |||  |||    
T  4292728 gaatggaatggtgtgtgatggaactcattccatccaata-ccactattttaactagttttccattcccctcaatttgg---gtatccaatggaatataac 4292633  T
Q  184 acattaataacacaattacaattttgtccttactttt 220  Q
    |||||||||| |||||||||||||||||| |||||||    
T  4292632 acattaataatacaattacaattttgtccctactttt 4292596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 22405077 - 22405117
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  22405077 gaatggaatggagtgtgatggaactcattccatccaatacc 22405117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 35033905 - 35033773
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||  ||| | |||||||||||       ||| || || ||||| ||||| ||||||||    
T  35033905 gaatggaatggaatgtgatggaactcattccatccaata-ccactcattcatccaattttccattcctcccaaattaggatgtatccaatggaatggaac 35033807  T
Q  184 acattaataacacaattacaattttgtccttact 217  Q
    ||||||||||| |||||||| |||| ||| ||||    
T  35033806 acattaataacccaattacatttttatccctact 35033773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 41809911 - 41809856
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttg 209  Q
    ||||||||| ||||| ||||| |||||||| ||||||||| |||||||||||||||    
T  41809911 caatttgggatgtattcaatggaatggaacgcattaataagacaattacaattttg 41809856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 35292080 - 35292205
Alignment:
Q  82 ggaatagaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttccaaat----caatttggggtgtatgcaatgtaa 177  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||| ||||| ||| | |||| ||| ||  |    ||||||||||||||| ||||| ||    
T  35292080 ggaatggaatggaatggagtgtgatgtaactcattcaatccaata-ccacccattaagccaaattttcatttcctccaatttggggtgtatccaatggaa 35292178  T
Q  178 tggaacacattaataacacaattacaa 204  Q
    ||||| |||| ||||| ||||| ||||    
T  35292179 tggaatacataaataatacaatgacaa 35292205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 21263671 - 21263527
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||| ||||||||| ||||||| |||||||||||||||| ||  |||    ||||||||||    |  |||||||||||||||  |||| |||| |||    
T  21263671 gaatgggatggagtgtgatggaacccattccatccaatacc-actcattccttcaattttccattccatccaatttggggtgtatcgaatggaatgaaac 21263573  T
Q  184 -acattaataacacaattacaattttgtccttacttttgattcccc 228  Q
     |||||||||| | |||||| |||||||||| |||||| |||||||    
T  21263572 cacattaataatataattaccattttgtcctcacttttcattcccc 21263527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 31227734 - 31227797
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaatttt 147  Q
    |||| |||||||||| ||||| |||||| ||||||||||||||| ||||  ||||||||||||||    
T  31227734 gaatggaatggaatgaagtgtgatggaaatcattccatccaata-ccactcatttaaccaatttt 31227797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 48084718 - 48084781
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaatttt 147  Q
    |||| |||||||||||||| | |||||||||||| ||||||||| ||||  ||||||||||||||    
T  48084718 gaattgaatggaatggagtcttatggaactcatttcatccaata-ccactcatttaaccaatttt 48084781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 41223755 - 41223714
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaa 124  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  41223755 gaatggaatggaatggagtgtgatggaacccattccatccaa 41223714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 28219059 - 28219210
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||  |||    ||||||| ||    |  ||||||||||||||| ||||| ||||||||    
T  28219059 gaatggaatggagtgtgatggaacccattccatccaatacc-actcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaac 28219157  T
Q  184 -acattaataacacaattacaattttgtccttacttttgattcccctatttca 235  Q
     |||||||||| | |||||| |||||||||| | |||| ||||||| ||||||    
T  28219158 cacattaataatataattaccattttgtcctcaattttcattccccaatttca 28219210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 7444770 - 7444706
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttc 148  Q
    |||| |||||||||||||||| ||||||| |||||||||||||| ||||  |||||||||||||||    
T  7444770 gaatggaatggaatggagtgtgatggaacccattccatccaata-ccactcatttaaccaattttc 7444706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 44246372 - 44246412
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  44246372 gaatggaatggagtgtgatggaactcattccatccaatacc 44246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 1499310 - 1499183
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttccaaatc----aatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||| ||||| |||||| ||||||||||||||||| | | ||| ||||||||||  |  ||    |||||| ||||||| ||||| |||||||     
T  1499310 gaatggaatgcagtgtgatggaattcattccatccaataccaatc-attcaaccaattttttatttcccccaatttgaggtgtatccaatggaatggaat 1499212  T
Q  184 acattaataacacaattacaattttgtcc 212  Q
     |||| |||| ||||||||||||||||||    
T  1499211 gcatttataatacaattacaattttgtcc 1499183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 28199229 - 28199170
Alignment:
Q  158 ttggggtgtatgcaatgtaatggaacacattaataacacaattacaattttgtccttact 217  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||| |||| ||| ||||    
T  28199229 ttggggtgtatccaatgggatggaacacattaataacccaattacatttttatccctact 28199170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 10354290 - 10354336
Alignment:
Q  82 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||    
T  10354290 ggaatggaatggaatggagtgcgatgaaactcattccatccaatacc 10354336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 44246441 - 44246479
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaata 192  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  44246441 caatttggggtgtatccaatggaatggaacacattaata 44246479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 17999967 - 17999914
Alignment:
Q  154 caatttggggtgtatgcaatgtaatggaacacattaataacacaattacaattt 207  Q
    ||||||||||||||| | ||| ||||||| |||||||||| ||||| |||||||    
T  17999967 caatttggggtgtatccgatggaatggaatacattaataaaacaatgacaattt 17999914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 38661 - 38553
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaaccaattttcca----aatcaatttggggtgtatgcaatgtaatggaac 183  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||  |||   |||||||| ||    | |||||||||| ||||| ||||| ||||||||    
T  38661 gaatggaatggagtgtgatggaacccattccatccaata-ccactcattcttccaatttttcattccattcaatttgggatgtatccaatggaatggaac 38563  T
Q  184 acattaataa 193  Q
    ||||||||||    
T  38562 acattaataa 38553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 38679777 - 38679821
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatac 127  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  38679777 gaatagaatggaatggagtgtgatggaactcattccattcaatac 38679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 34924835 - 34924794
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaa 124  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  34924835 gaatggaatggaatggagtgtgatggaacccattccatccaa 34924794  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 42025443 - 42025398
Alignment:
Q  83 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||    
T  42025443 gaatggaattgaatggagtgtgatggaacccattccatccaatacc 42025398  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 30800223 - 30800263
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    ||||| ||| |||||| ||||||||||||||||||||||||    
T  30800223 gaatgaaatagagtgtgatggaactcattccatccaatacc 30800263  T

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Target: scaffold0227 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 279 - 239
Alignment:
Q  88 gaatggaatggagtgtaatggaactcattccatccaatacc 128  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  279 gaatggaatggagtgtgatggaacccattccatccaatacc 239  T

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