View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_high_54 (Length: 242)

Name: NF7811_high_54
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_high_54
NF7811_high_54
[»] chr2 (2 HSPs)
chr2 (72-189)||(8019528-8019645)
chr2 (203-242)||(8019760-8019799)
[»] chr3 (14 HSPs)
chr3 (117-186)||(28183439-28183508)
chr3 (43-189)||(17746683-17746838)
chr3 (43-189)||(19048003-19048158)
chr3 (140-189)||(28081438-28081487)
chr3 (117-189)||(28147234-28147307)
chr3 (124-189)||(27974226-27974291)
chr3 (54-101)||(28001872-28001919)
chr3 (126-173)||(28482365-28482412)
chr3 (126-173)||(28511177-28511224)
chr3 (140-186)||(27918067-27918113)
chr3 (148-189)||(28053208-28053249)
chr3 (148-189)||(28063633-28063674)
chr3 (145-189)||(18026977-18027021)
chr3 (145-189)||(27392719-27392763)
[»] scaffold0257 (1 HSPs)
scaffold0257 (117-169)||(17021-17073)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 8019528 - 8019645
Alignment:
Q  72 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccattcatttattgcagga 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8019528 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccatttatttattgcagga 8019627  T
Q  172 attgagggggaatgtgga 189  Q
    ||||||| ||||||||||    
T  8019628 attgaggaggaatgtgga 8019645  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 8019760 - 8019799
Alignment:
Q  203 taagatgtctacctcacttacttaagatgagaatcgaaga 242  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8019760 taagatgtctacctcacttacttaagatgagaatcaaaga 8019799  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 28183439 - 28183508
Alignment:
Q  117 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgt 186  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28183439 actttgttattcttattttatgcatgtgtttatttcccattcatttattgcaggaattgagtgggaatgt 28183508  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 17746838 - 17746683
Alignment:
Q  43 agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgt--------acttggttattcttatc 133  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||        |||| |||||||||||     
T  17746838 agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttatt 17746739  T
Q  134 atatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
     |||   |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  17746738 ttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 17746683  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 19048158 - 19048003
Alignment:
Q  43 agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgt--------acttggttattcttatc 133  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||        |||| |||||||||||     
T  19048158 agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttatt 19048059  T
Q  134 atatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
     |||   |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  19048058 ttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 19048003  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 28081438 - 28081487
Alignment:
Q  140 atgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28081438 atgtgtttatttcccattcatttattgcaggaattgagtgggaatgtgga 28081487  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 28147234 - 28147307
Alignment:
Q  117 acttggttattcttatcatatgcat-gtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
    |||| |||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  28147234 actttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtgga 28147307  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 27974226 - 27974291
Alignment:
Q  124 tattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
    |||||||||  |||||||||||||||||| ||||| |||| || |||||||||| |||||||||||    
T  27974226 tattcttattttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtgga 27974291  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 28001872 - 28001919
Alignment:
Q  54 gtgagtttgaataaacactctagtatatcaaatatctcaacaaccttt 101  Q
    ||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  28001872 gtgagtttgaatcgacactctagtatattaaatatctccacaaccttt 28001919  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 28482412 - 28482365
Alignment:
Q  126 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 173  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28482412 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28482365  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 28511224 - 28511177
Alignment:
Q  126 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 173  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28511224 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28511177  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 27918067 - 27918113
Alignment:
Q  140 atgtgtttatttcccattcatttattgcaggaattgagggggaatgt 186  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  27918067 atgtgtttatttcccattcgtttattacaggatttgagtgggaatgt 27918113  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 28053208 - 28053249
Alignment:
Q  148 atttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28053208 atttcacattcatttattgcaggaattgagtgggattgtgga 28053249  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 28063633 - 28063674
Alignment:
Q  148 atttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28063633 atttcacattcatttattgcaggaattgagtgggattgtgga 28063674  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 18027021 - 18026977
Alignment:
Q  145 tttatttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  18027021 tttatttcccattcatttgtggcaggaatggagtgggaatgtgga 18026977  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 27392763 - 27392719
Alignment:
Q  145 tttatttcccattcatttattgcaggaattgagggggaatgtgga 189  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  27392763 tttatttcccattcatttgtggcaggaatcgagcgggaatgtgga 27392719  T

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Target: scaffold0257 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 17021 - 17073
Alignment:
Q  117 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcag 169  Q
    |||| |||||||||||  ||| |||||||||||||||||||||||||||||||    
T  17021 actttgttattcttattttatacatgtgtttatttcccattcatttattgcag 17073  T

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