View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7811_high_58 (Length: 207)

Name: NF7811_high_58
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7811_high_58
NF7811_high_58
[»] chr2 (2 HSPs)
chr2 (1-193)||(8020019-8020211)
chr2 (131-189)||(22391574-22391632)
[»] chr3 (22 HSPs)
chr3 (1-53)||(28132208-28132260)
chr3 (1-53)||(27975610-27975662)
chr3 (129-191)||(28159634-28159696)
chr3 (122-192)||(28148170-28148242)
chr3 (130-191)||(28184199-28184260)
chr3 (1-53)||(28147992-28148044)
chr3 (1-53)||(28510616-28510668)
chr3 (55-182)||(28035806-28035932)
chr3 (1-53)||(28053733-28053785)
chr3 (1-53)||(28064158-28064210)
chr3 (127-187)||(28481226-28481286)
chr3 (127-187)||(28510407-28510467)
chr3 (124-191)||(28053934-28054000)
chr3 (124-191)||(28064359-28064425)
chr3 (131-187)||(28082191-28082247)
chr3 (1-53)||(28481444-28481496)
chr3 (52-182)||(28002553-28002682)
chr3 (1-50)||(28002436-28002485)
chr3 (5-53)||(28035690-28035738)
chr3 (1-53)||(28184025-28184077)
chr3 (128-192)||(27460800-27460864)
chr3 (9-53)||(27460990-27461034)
[»] chr7 (1 HSPs)
chr7 (127-192)||(8693152-8693216)
[»] scaffold0257 (3 HSPs)
scaffold0257 (1-53)||(17587-17639)
scaffold0257 (52-88)||(17704-17740)
scaffold0257 (123-155)||(17766-17798)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8020019 - 8020211
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaactatccctggcttcagcatcaacagcagacttcatatttgatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020019 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaactatccctggcttcagcatcaacagcagacttcatatttgatatt 8020118  T
Q  101 aatggtttatatgctagcaagtttggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatatt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020119 aatggtttatatgctagcaagtttggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatatt 8020211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 22391574 - 22391632
Alignment:
Q  131 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattaca 189  Q
    |||||||||| | | |||||||||| ||| |||||||| ||||||||||| ||||||||    
T  22391574 ggtacacactttgtccaatatttttgaaatctattacatgttggctgtaattaattaca 22391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28132208 - 28132260
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28132208 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 28132260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27975610 - 27975662
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27975610 tcacaaagtggagattccaaatctgatagttgtaatatttgaaaatctaccaa 27975662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 28159634 - 28159696
Alignment:
Q  129 acggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 191  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28159634 acggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28159696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 28148170 - 28148242
Alignment:
Q  122 tttggctacggtacacactctatacaatat--ttttaaaaactattacacgttggctgtaaataattacatat 192  Q
    ||||||||||||||| ||||||| ||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  28148170 tttggctacggtacagactctatccaatatatttttaaaaactattacatgttggccgtaaataattacatat 28148242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 28184199 - 28184260
Alignment:
Q  130 cggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 191  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28184199 cggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28184260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28147992 - 28148044
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28147992 tcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28148044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28510668 - 28510616
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28510668 tcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28510616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 28035806 - 28035932
Alignment:
Q  55 actatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatatttt 154  Q
    |||||| ||||||||| |||||||| || ||||   |  |||||||  |||||||||| || || |||||| ||||||||| |||||||| |||||||||    
T  28035806 actatctctggcttcatcatcaacaacaaactttgaaaatgatatttctggtttatattctggcgagtttgactacggtacgcactctatccaatatttt 28035905  T
Q  155 taaaaactattacacgttggctgtaaat 182  Q
    | |||||||||| | |||||||||||||    
T  28035906 t-aaaactattaaatgttggctgtaaat 28035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28053733 - 28053785
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  28053733 tcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctaccaa 28053785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28064158 - 28064210
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  28064158 tcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctaccaa 28064210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 28481286 - 28481226
Alignment:
Q  127 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 187  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28481286 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 28510467 - 28510407
Alignment:
Q  127 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 187  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28510467 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 28053934 - 28054000
Alignment:
Q  124 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 191  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28053934 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28054000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 28064359 - 28064425
Alignment:
Q  124 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 191  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28064359 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28064425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 28082191 - 28082247
Alignment:
Q  131 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 187  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  28082191 ggtacacattctatccaatatttttaaaaactattacatgttgactgtaaattatta 28082247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28481496 - 28481444
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    ||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  28481496 tcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctaccaa 28481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 28002553 - 28002682
Alignment:
Q  52 aaaactatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatat 151  Q
    ||||||||| ||| |||||||||||||||||||||||  |  |||||||  |||||||  | |   |  ||||| | | |||||||||||||| ||||||    
T  28002553 aaaactatctctgacttcagcatcaacagcagacttcgaaaatgatatttctggtttacgttcggtctggtttgacgagggtacacactctatccaatat 28002652  T
Q  152 ttttaaaaactattacacgttggctgtaaat 182  Q
    |||| |||||||||| | |||||||||||||    
T  28002653 tttt-aaaactattaaatgttggctgtaaat 28002682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28002436 - 28002485
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 50  Q
    ||||||||| |||||||||||||| ||| ||||| |||||||||||||||    
T  28002436 tcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctac 28002485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 28035690 - 28035738
Alignment:
Q  5 aaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||||||| ||| ||||| | ||||||||||||||||    
T  28035690 aaagtggagattccaaatctaaaatttgtagtgtttgaaaatctaccaa 28035738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28184025 - 28184077
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    ||||||||||||||||||||||||  ||  |||| ||||||||||||||||||    
T  28184025 tcacaaagtggagattccaaatctagaatgtgtagtatttgaaaatctaccaa 28184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 27460864 - 27460800
Alignment:
Q  128 tacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 192  Q
    ||||||||||||||||| |||| ||| | ||||  |||||| |||||||||||||| || |||||    
T  27460864 tacggtacacactctatccaatctttctgaaaatcattacatgttggctgtaaatatttgcatat 27460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 27461034 - 27460990
Alignment:
Q  9 tggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    |||||||||||||||| ||| ||||| |||||| |||||||||||    
T  27461034 tggagattccaaatctaaaacttgtagtatttgtaaatctaccaa 27460990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 8693216 - 8693152
Alignment:
Q  127 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 192  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  8693216 ctacggtacacactctatccaatattttttaaa-ctattacacgttggctgtaaataattacatat 8693152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17587 - 17639
Alignment:
Q  1 tcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 53  Q
    ||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  17587 tcacaaaatggagattccaaatctaaaatttgtagtatttgaaaatctaccaa 17639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 17704 - 17740
Alignment:
Q  52 aaaactatccctggcttcagcatcaacagcagacttc 88  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  17704 aaaactatctctggcttcagcatcaacaccagacttc 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 17766 - 17798
Alignment:
Q  123 ttggctacggtacacactctatacaatattttt 155  Q
    |||||||||||||||||||||| ||||||||||    
T  17766 ttggctacggtacacactctatccaatattttt 17798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University