View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_high_7 (Length: 483)
Name: NF7811_high_7
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Original strand, 39803109 - 39803566
Alignment:
| Q |
9 |
gaagaatatgttgatcatttgttttcttattgtgattggtttggtgaaatttgggatctagttttaaattggtttagtatttatagcattctctctaatt |
108 |
Q |
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| T |
39803109 |
gaagaatatgttgatcatttgttttcttattgtgattggtttggtgaaatttgggatctagttttaaattggtttagtatttatagcattctctctaatt |
39803208 |
T |
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| Q |
109 |
atgcttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacatgcaagtcttaattgacttgctagtgtttgaaatatttggat |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39803209 |
atgtttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacatgcaagtcttaattgacttgctagtgtttgaaatatttggat |
39803308 |
T |
|
| Q |
209 |
ggagaaaaatgcttgtgtttttcgtgataaagggcttttgattcatatacttgataatgtgaaaatgttagtcttttggtggcttaaacctaatttttat |
308 |
Q |
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| T |
39803309 |
ggagaaaaatgcttgtttttttcgtgataaagggcttttgattcatatacttgataatgtgaaaatgttagtcttttggtggcttaaacctaatttttat |
39803408 |
T |
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| Q |
309 |
aatttatcttttgatttgcatgcatgtctgatggataaatcccttagtttatgagatgcccactcagcacttcaataatttttgtttaacccgtttagat |
408 |
Q |
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| T |
39803409 |
aatttatcttttgatttgcatgcatgtctgatggataaatcccttagtttatgagatgcccactcagcacttcaataatttttgtttaacccgtttagat |
39803508 |
T |
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| Q |
409 |
ttctggtacttttgtatgacttttgtttgttactattatatgcacatcttgtgataag |
466 |
Q |
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| T |
39803509 |
ttctggtacttttgtatgacttttgtttgttactattatatgcacatcttgtgataag |
39803566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 69 - 432
Target Start/End: Original strand, 39811105 - 39811476
Alignment:
| Q |
69 |
gttttaaattggtttagtatttatagcattctctctaattatgcttctgatcatgctacccagtttggtggctcggtgttatgctctaaagagatacatg |
168 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
39811105 |
gttttaaattggtttagcatttatagcattctctctaattatgcttctgatcatgctacccagtttggtggctcagtgttgtgctctaaagagatacatg |
39811204 |
T |
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| Q |
169 |
caagtctt------aattgacttgctagtgtttgaaatatttggatggagaaaaatgcttgtgtttttcgtgataaagggcttttgattcatatacttga |
262 |
Q |
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| T |
39811205 |
caagtcttcatcttaattgacttgctcatgtttgaagtatttggacggagaaaaatgcttgtgtttttcgtgataaagggcttttgattcata---ttga |
39811301 |
T |
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| Q |
263 |
taatgtgaaaatgttagtcttttggtggcttaaacctaatttttataatttatcttttgatttgca--tgcatgtctgatggataaatcccttagttta- |
359 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| | ||||||||||||||||||||||||||||||| |
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| T |
39811302 |
taaggtgaaaatgttagtcttttggtggcttaaacctaattattctaatttatctttatcttttgatttgcatgtctgatggataaatcccttagtttat |
39811401 |
T |
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| Q |
360 |
--tgagatgcccactcagcacttcaataatttttgtttaacccgtttagatttctggtacttttgtatgactttt |
432 |
Q |
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|||| |||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
39811402 |
cttgagctgcccacttagcacatcaattatttttgtttaaccggtttagatttctggtacttttgtatcactttt |
39811476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 39812278 - 39812315
Alignment:
| Q |
427 |
acttttgtttgttactattatatgcacatcttgtgata |
464 |
Q |
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| T |
39812278 |
acttttgtttgctactattatatgcacatcttgtgata |
39812315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 39811070 - 39811108
Alignment:
| Q |
12 |
gaatatgttgatcatttgttttcttattgtgattggttt |
50 |
Q |
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| T |
39811070 |
gaatatgttgatcgtttgttttcttattgttattggttt |
39811108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 43911865 - 43911910
Alignment:
| Q |
37 |
attgtgattggtttggtgaaatttgggatctagttttaaattggtt |
82 |
Q |
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| T |
43911865 |
attgtgattggtttggtaaagtttgggttctaattttaaattggtt |
43911910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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