View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_high_8 (Length: 481)
Name: NF7811_high_8
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 34679400 - 34679084
Alignment:
| Q |
19 |
gatataaggtagatattctgaggtaaagttgatcagcaattagatttggttctcttaaaattccacaaaagttaaagtcgaggcttttggtgatctcgag |
118 |
Q |
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| T |
34679400 |
gatataaggtagatattctgaggtgaagttgatcagcaattagatttggttctcttaaaattccacaaaagttaaagtcgaggcttttggtgatctcgag |
34679301 |
T |
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| Q |
119 |
aaacaaaacagggccagaaagagagagagaaagatgaatattggagggctattagtataggtaattatatatacaacaaagataaaattgtacagtcaga |
218 |
Q |
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| T |
34679300 |
aaacaaaacagggtcagaaagagagagagaaagatgaatattggaggactattagtataggtaattatatatacaac-aagataaaattgtacagtcaga |
34679202 |
T |
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| Q |
219 |
ccctcgtctctcccacaaattgtcact-----tca-ctgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagag-cttg |
311 |
Q |
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| T |
34679201 |
ccctcgtctctcccacaaattgtcactggcactcagctgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagagtgaag |
34679102 |
T |
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| Q |
312 |
agagtaaagtttcaaatt |
329 |
Q |
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| T |
34679101 |
agagtaaagtttcaaatt |
34679084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 34679018 - 34678933
Alignment:
| Q |
329 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
414 |
Q |
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| T |
34679018 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
34678933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 405 - 460
Target Start/End: Complemental strand, 34678923 - 34678868
Alignment:
| Q |
405 |
gatattttaaagtggttcatagatgataatgaaatatacgatgttgattaaaataa |
460 |
Q |
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| T |
34678923 |
gatattttaaagtggttcatagatgatattgaaatatacgatgttgataaaaataa |
34678868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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