View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_1 (Length: 713)
Name: NF7811_low_1
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 12117898 - 12117597
Alignment:
| Q |
18 |
ccattgactcatgctgttaaatcagatacaagaggacattatgaagactttcttataagtctcttaggtactgattattagtaggtgatcacactaatta |
117 |
Q |
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| T |
12117898 |
ccattgactcatgctgttaaatcagatacaagaggacattatgaagactttcttataagtctcttaggtactgattattagtaggtgatcacactaatta |
12117799 |
T |
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| Q |
118 |
agcaaagcagggttcctatgtatgtactagcaatgtaattattgtatcatgttcaattaagagaatttaatcattgttgggctaaataggagtagatttt |
217 |
Q |
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| T |
12117798 |
agcaaagcagggttcctatgtatgtactagctatgtaattattgtatcatgttcaattaagagaatttaatcattgttgggctaaataggagtagatttt |
12117699 |
T |
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| Q |
218 |
agcccaatttatattaacatgtagttaatatgnnnnnnnttcaattaaatatagaaaagaattttataattcttacaagcttaaagaagttcatccaaac |
317 |
Q |
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| T |
12117698 |
agcccaatttatatttacatctagtta--atgaaaataattcaattaaatatagaaaagaattttataattcttacaagcttaaagaagttcatccaaac |
12117601 |
T |
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| Q |
318 |
attt |
321 |
Q |
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|||| |
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| T |
12117600 |
attt |
12117597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 460 - 708
Target Start/End: Complemental strand, 12117385 - 12117136
Alignment:
| Q |
460 |
aagcctgtgagaattttttactcccttaaaaggaactttatgcagaaaaggaatgaatgcagcagatgaaagtattccccatgcaagttactactactac |
559 |
Q |
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| T |
12117385 |
aagcctgtaggaattttttactcccttaaaaggaactttatgcagaaaaggaatgaatgcagcagatgaaagtattacccatgcaagttactactactac |
12117286 |
T |
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| Q |
560 |
tttctttgatat---aagcatctcaaaacctgaaaagtttataagtagccaatttcctctcttataatttaatataagcatttggtgaaggtcctaattc |
656 |
Q |
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| T |
12117285 |
tttctttgatatatgatgcatctcaaaacctgaaaagtttataagtagccaatttcctctctgataattta--ataagcatttggtgaaggtcctaattc |
12117188 |
T |
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| Q |
657 |
ccatataaaattcaaaacacactaataaaatgttcgaattatattattcgag |
708 |
Q |
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| T |
12117187 |
ccatataaaattcaaaacacactaataaaatgttcggattatattatccgag |
12117136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 12117504 - 12117453
Alignment:
| Q |
416 |
ataagggaagatcgtgttagatatttgcattaatatgcacctataagcctgt |
467 |
Q |
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| T |
12117504 |
ataaggaaagatcgtgttagatatttgcattaatatgcacctataagtctgt |
12117453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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