View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_10 (Length: 462)
Name: NF7811_low_10
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 31535361 - 31534928
Alignment:
| Q |
18 |
cttgaaccatgagtcacaacagcctcagataaagaagcatcctttgaacttaaaactgtaccagaatttgaagaagcttacgtcctctgacatattctac |
117 |
Q |
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| T |
31535361 |
cttgaaccatgagtcacaacagcctcagataaagaagcatcctttgaacttaaaactgtaccagaatttgaagaagcttacgtcctctgacatattctac |
31535262 |
T |
|
| Q |
118 |
gaataggacgggcaacactagctgaattccgtttatgaagtccatcctcagaatcgctatcatcggaatcaaagtagcgaattgagaccaatgagcttga |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31535261 |
gaataggatgggcaacactagctgaattccgtttatgaagtccatcctcagaatcgctatcatcggaatcaaagtagcgaattgaggccaatgagcttga |
31535162 |
T |
|
| Q |
218 |
tttcttttttgtttcacttttcttattctgaatgtgaggttcatgagtactagttgtcttttgtgagtctgcaactagagcataactatcagaatcagaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31535161 |
tttcttttttgtttcacttttcttattctgaatgtgaggttcatgagtactagttgtcttttgtgagtctgcaactagagcataactatcaaaatcagaa |
31535062 |
T |
|
| Q |
318 |
gatttgatgtgtgctcttaatgaagatgaaatatcagccagtgcagcagaggttgcacccttggattccatgtccaaatgcttaccaaccggaaaagcac |
417 |
Q |
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| T |
31535061 |
gatttgacgtgtgctcttaatgaagatgaaatatcagccagtgcagcagaggttgcacccttagattccatgtccaaatgcttaccaactggaaaagcac |
31534962 |
T |
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| Q |
418 |
tccggttttcgaaatatgaatcttcaaaattcat |
451 |
Q |
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| T |
31534961 |
tccggttttcaaaatatgaatcttcaaaattcat |
31534928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 66 - 332
Target Start/End: Original strand, 34534270 - 34534536
Alignment:
| Q |
66 |
cttaaaactgtaccagaatttgaagaagcttacgtcctctgacatattctacgaataggacgggcaacactagctgaattccgtttatgaagtccatcct |
165 |
Q |
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|||||||||||||| | |||| ||||||| | || || || ||| ||||| || |||||| ||||||||||||||| || |||||||| | || ||| |
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| T |
34534270 |
cttaaaactgtaccggtttttggagaagctgatgttcttcgagatactctactaacaggacgcgcaacactagctgaactctgtttatgacgcacagcct |
34534369 |
T |
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| Q |
166 |
cagaatcgctatcatcggaatcaaagtagcgaattgagaccaatgagcttgatttcttttttgtttcacttttcttattctgaatgtgaggttcatgagt |
265 |
Q |
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|||| || |||||||| ||||||||| || |||| ||| | ||| |||||||||||||||| ||||| || ||||| |||| ||||||||||| | |
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| T |
34534370 |
cagattcactatcatcagaatcaaagaagggaatcgaggtccgtgaacttgatttcttttttgcgtcactcagctcattcttaatgcgaggttcatgaat |
34534469 |
T |
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| Q |
266 |
actagttgtcttttgtgagtctgcaactagagcataactatcagaatcagaagatttgatgtgtgct |
332 |
Q |
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| T |
34534470 |
gctaatggactcttgtgagtctgcaaccagatcataactatcagaatcagaagatttattgtgtgct |
34534536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 34542755 - 34542834
Alignment:
| Q |
250 |
tgtgaggttcatgagtactagttgtcttttgtgagtctgcaactagagcataactatcagaatcagaagatttgatgtgt |
329 |
Q |
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||||| ||||||| ||||| || |||| ||||||||||||||| ||| |||| |||||||||||| |||||||| ||||| |
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| T |
34542755 |
tgtgaagttcatgggtactggtggtctcttgtgagtctgcaaccagatcatagctatcagaatcaaaagatttgttgtgt |
34542834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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