View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7811_low_11 (Length: 456)
Name: NF7811_low_11
Description: NF7811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7811_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 11282130 - 11282335
Alignment:
| Q |
21 |
atccgaacaccatttggtatgctaagctaaattagcttcatatctaagcttagacctcttaattatatctatggatatttaggtgtagatagctagctgc |
120 |
Q |
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| T |
11282130 |
atccgaacaccatttggtatgctaagctaaattagcttcatatttaagcttagacctcttaattatatctatggatatttaggtgtagatagctagctgc |
11282229 |
T |
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| Q |
121 |
ttgaccatactctttacacttcaaatttggttttacagctagcaataccttaccaactctacaccctatttctaa----aattaatcatatcaacccata |
216 |
Q |
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| T |
11282230 |
ttgaccatactc-ttacacttcaaatttggttttacagctagcaataccttaccaactctacaccctatttctaaaattaattaatcatatcaacccata |
11282328 |
T |
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| Q |
217 |
ccttcat |
223 |
Q |
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||||||| |
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| T |
11282329 |
ccttcat |
11282335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 443
Target Start/End: Original strand, 11282413 - 11282591
Alignment:
| Q |
265 |
aagtagaatgatgtcttgaaagttgaaaataaaagacaacatcatatcgtatagatctaatttcataacactaggcaaagttaaaatatgcaatcctcgt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11282413 |
aagtagaatgatgtcttgaaagttgaaaataaaagacaacatcatatcgtatagatctaatttcataacactaggcaaagttaaaatatgcaatcctcat |
11282512 |
T |
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| Q |
365 |
gcccttattggctgaaacaaaaccaaaactcaannnnnnnnnnnnngctttagaaacaagcaaaacacaatgattatat |
443 |
Q |
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| T |
11282513 |
gcccttattggctgaaacaaaaccaaaactcaattttttgatttttgctttagaagcaagcaaaacacaatgattatat |
11282591 |
T |
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